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ONTOLOGY REPORT - ANNOTATIONS

Term:short-chain fatty acid catabolic process
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Accession:GO:0019626 term browser browse the term
Definition:The chemical reactions and pathways resulting in the breakdown of a short-chain fatty acid. A short-chain fatty acid has an aliphatic tail containing fewer than 6 carbons.
Comment:While there is not universal consensus on the lengths of short-, medium-, long- and very-long-chain fatty acids, the GO uses the definitions in ChEBI (see CHEBI:26666, CHEBI:59554, CHEBI:15904 and CHEBI:27283).
Synonyms:exact_synonym: short-chain fatty acid breakdown;   short-chain fatty acid catabolism;   short-chain fatty acid degradation
 xref: MetaCyc:ACETOACETATE-DEG-PWY


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short-chain fatty acid catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ces1d carboxylesterase 1D acts_upstream_of_or_within ISO (PMID:16804080) RGD PMID:16804080 NCBI chr19:13,873,490...13,912,035
Ensembl chr19:13,796,623...13,912,035 		JBrowse link
2-oxobutyrate catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Phyh phytanoyl-CoA 2-hydroxylase IDA RGD PMID:10588950 RGD:727286 NCBI chr17:73,329,461...73,346,359
Ensembl chr17:73,329,082...73,346,409 		JBrowse link
butyrate catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acads acyl-CoA dehydrogenase short chain involved_in IDA
IBA		 GO_REF:0000033 GO_Central
RGD		 PMID:3968063 GO_REF:0000033, RGD:2317678 NCBI chr12:41,493,650...41,502,897
Ensembl chr12:41,493,626...41,502,898 		JBrowse link
propionate catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pck1 phosphoenolpyruvate carboxykinase 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:161,930,256...161,936,205
Ensembl chr 3:161,930,256...161,936,191 		JBrowse link
G Pck2 phosphoenolpyruvate carboxykinase 2 (mitochondrial) involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr15:29,027,891...29,036,729
Ensembl chr15:29,027,894...29,037,283 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20115
    cellular process 18524
      cellular metabolic process 10294
        cellular lipid metabolic process 1068
          fatty acid metabolic process 454
            short-chain fatty acid metabolic process 14
              short-chain fatty acid catabolic process 5
                2-oxobutyrate catabolic process 1
                acetoacetic acid catabolic process 0
                butyrate catabolic process 1
                propionate catabolic process + 2
Path 2
Term Annotations click to browse term
  biological_process 20115
    metabolic process 12289
      cellular metabolic process 10294
        organic acid metabolic process 1033
          oxoacid metabolic process 1022
            carboxylic acid metabolic process 1007
              monocarboxylic acid metabolic process 730
                fatty acid metabolic process 454
                  fatty acid catabolic process 115
                    short-chain fatty acid catabolic process 5
                      2-oxobutyrate catabolic process 1
                      acetoacetic acid catabolic process 0
                      butyrate catabolic process 1
                      propionate catabolic process + 2
paths to the root