ONTOLOGY REPORT - ANNOTATIONS
Term: double-strand break repair via nonhomologous end joining
Accession: GO:0006303
browse the term
Definition: The repair of a double-strand break in DNA in which the two broken ends are rejoined with little or no sequence complementarity. Information at the DNA ends may be lost due to the modification of broken DNA ends. This term covers instances of separate pathways, called classical (or canonical) and alternative nonhomologous end joining (C-NHEJ and A-NHEJ). These in turn may further branch into sub-pathways, but evidence is still unclear.
Synonyms: exact_synonym: NHEJ
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APLF
aprataxin and PNKP like factor
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr10:67,454,500...67,522,659
Ensembl chr10:67,454,356...67,521,761
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ASTE1
asteroid homolog 1
involved_in
ISO
(PMID:34354233)
UniProt
PMID:34354233
NCBI chr23:28,233,165...28,244,036
Ensembl chr23:28,231,032...28,243,768
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ASTE1
asteroid homolog 1
involved_in
IEA
Ensembl
GO_REF:0000107
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CYREN
cell cycle regulator of NHEJ
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr16:12,994,508...13,003,632
Ensembl chr16:12,994,479...12,998,435
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ERCC1
ERCC excision repair 1, endonuclease non-catalytic subunit
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 1:110,130,353...110,146,660
Ensembl chr 1:110,130,481...110,146,602
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ERCC4
ERCC excision repair 4, endonuclease catalytic subunit
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 6:29,193,192...29,226,935
Ensembl chr 6:29,196,421...29,226,887
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HMGB1
high mobility group box 1
involved_in
ISO
(PMID:9600082)
GO_Central
PMID:9600082
NCBI chr25:9,431,223...9,558,167
Ensembl chr25:9,431,218...9,558,165
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HMGB2
high mobility group box 2
involved_in
ISO
(PMID:9600082)
GO_Central
PMID:9600082
NCBI chr25:23,939,024...23,941,720
Ensembl chr25:23,939,027...23,941,606
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IFFO1
intermediate filament family orphan 1
involved_in
ISO
(PMID:31548606)
UniProt
PMID:31548606
NCBI chr27:38,454,397...38,467,815
Ensembl chr27:38,454,465...38,467,502
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KDM2A
lysine demethylase 2A
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr18:50,178,511...50,294,097
Ensembl chr18:50,181,024...50,291,127
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LIG1
DNA ligase 1
acts_upstream_of_or_within
ISO
(PMID:21655080)
MGI
PMID:21655080
NCBI chr 1:108,105,523...108,143,954
Ensembl chr 1:108,105,987...108,143,953
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LIG3
DNA ligase 3
acts_upstream_of_or_within
ISO
(PMID:21655080)
MGI
PMID:21655080
NCBI chr 9:38,346,275...38,366,634
Ensembl chr 9:38,346,199...38,366,193
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LIG4
DNA ligase 4
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:16777961) (PMID:10823907)
Ensembl MGI
PMID:10823907 PMID:16777961
GO_REF:0000107
NCBI chr22:56,980,333...56,987,636
Ensembl chr22:56,980,622...56,983,357
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MLH1
mutL homolog 1
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:15084308)
Ensembl MGI
PMID:15084308
GO_REF:0000107
NCBI chr23:6,889,108...6,938,117
Ensembl chr23:6,889,135...6,938,116
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MRE11
MRE11 homolog, double strand break repair nuclease
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr21:6,448,909...6,528,185
Ensembl chr21:6,449,822...6,527,119
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NHEJ1
non-homologous end joining factor 1
involved_in
IEA IBA
Ensembl GO_Central UniProt
GO_REF:0000033 GO_REF:0000107 GO_REF:0000117
NCBI chr37:25,637,214...25,719,241
Ensembl chr37:25,637,601...25,715,372
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NSMCE2
NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase
NOT|involved_in
ISO
(PMID:16810316)
UniProt
PMID:16810316
NCBI chr13:23,078,143...23,288,302
Ensembl chr13:23,078,173...23,288,304
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PAXX
PAXX non-homologous end joining factor
involved_in
IEA
InterPro Ensembl
GO_REF:0000002 GO_REF:0000107
NCBI chr 9:48,637,735...48,639,289
Ensembl chr 9:48,637,731...48,639,239
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PNKP
polynucleotide kinase 3'-phosphatase
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 1:106,695,649...106,707,229
Ensembl chr 1:106,694,589...106,702,150
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POLA1
DNA polymerase alpha 1, catalytic subunit
involved_in
ISO
(PMID:11470886)
UniProt
PMID:11470886
NCBI chr X:20,227,808...20,537,893
Ensembl chr X:20,227,886...20,537,902
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POLL
DNA polymerase lambda
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr28:14,193,065...14,201,312
Ensembl chr28:14,193,067...14,201,334
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PRKDC
protein kinase, DNA-activated, catalytic subunit
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:23836881)
InterPro MGI
PMID:23836881
GO_REF:0000002
NCBI chr29:24,904...243,926
Ensembl chr29:35,007...243,895
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PRPF19
pre-mRNA processing factor 19
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr18:55,389,902...55,400,241
Ensembl chr18:55,389,897...55,400,240
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PSMD14
proteasome 26S subunit, non-ATPase 14
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr36:6,883,612...6,985,291
Ensembl chr36:6,889,622...6,984,974
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RNF168
ring finger protein 168
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr33:29,542,209...29,575,127
Ensembl chr33:29,539,182...29,628,248
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RNF8
ring finger protein 8
involved_in
ISO
(PMID:21857671), (PMID:22266820)
UniProt
PMID:21857671 PMID:22266820
NCBI chr12:6,380,365...6,415,407
Ensembl chr12:6,292,459...6,415,382
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SETMAR
SET domain without mariner transposase fusion
involved_in
ISO
(PMID:16332963) (PMID:18263876), (PMID:21187428), (PMID:24573677)
UniProt
PMID:16332963 PMID:18263876 PMID:21187428 PMID:24573677
NCBI chr20:13,214,241...13,224,020
Ensembl chr20:13,214,241...13,224,020
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SMARCAL1
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a like 1
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr37:23,364,941...23,425,206
Ensembl chr37:23,367,220...23,419,248
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SMC5
structural maintenance of chromosomes 5
NOT|involved_in
ISO
(PMID:16810316)
UniProt
PMID:16810316
NCBI chr 1:87,192,988...87,285,678
Ensembl chr 1:87,194,867...87,285,606
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TP53BP1
tumor protein p53 binding protein 1
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr30:10,263,650...10,362,646
Ensembl chr30:10,263,650...10,336,134
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XRCC1
X-ray repair cross complementing 1
involved_in
IEA
InterPro Ensembl
GO_REF:0000002 GO_REF:0000107
NCBI chr 1:111,548,719...111,571,816
Ensembl chr 1:111,548,719...111,571,816
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XRCC4
X-ray repair cross complementing 4
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:17713479)
Ensembl MGI UniProt
PMID:17713479
GO_REF:0000107 GO_REF:0000117
NCBI chr 3:24,316,598...24,547,463
Ensembl chr 3:24,269,974...24,533,465
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XRCC5
X-ray repair cross complementing 5
involved_in
IEA
InterPro Ensembl
GO_REF:0000002 GO_REF:0000107
NCBI chr37:23,095,769...23,185,680
Ensembl chr37:23,095,754...23,185,586
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XRCC6
X-ray repair cross complementing 6
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:11751629)
InterPro MGI Ensembl
PMID:11751629
GO_REF:0000002 GO_REF:0000107
NCBI chr10:23,637,905...23,661,618
Ensembl chr10:23,638,237...23,661,480
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HELQ
helicase, POLQ like
involved_in
ISO
(PMID:34937945)
UniProt
PMID:34937945
NCBI chr32:7,245,867...7,290,138
Ensembl chr32:7,245,230...7,290,014
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HMCES
5-hydroxymethylcytosine binding, ES cell specific
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr20:2,808,687...2,831,123
Ensembl chr20:2,808,689...2,830,462
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LIG3
DNA ligase 3
involved_in
ISO
(PMID:24837021) (PMID:21655080)
BHF-UCL
PMID:21655080 PMID:24837021
NCBI chr 9:38,346,275...38,366,634
Ensembl chr 9:38,346,199...38,366,193
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NBN
nibrin
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr29:35,416,093...35,477,569
Ensembl chr29:35,416,093...35,477,563
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PLK1
polo like kinase 1
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 6:22,165,338...22,176,847
Ensembl chr 6:22,165,338...22,176,441
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POLQ
DNA polymerase theta
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr33:24,713,174...24,837,113
Ensembl chr33:24,714,086...24,837,402
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RHNO1
RAD9-HUS1-RAD1 interacting nuclear orphan 1
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr27:41,885,779...41,906,252
Ensembl chr27:41,886,052...41,891,759
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TOPBP1
DNA topoisomerase II binding protein 1
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr23:30,517,172...30,578,664
Ensembl chr23:30,516,125...30,578,108
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BEND2
BEN domain containing 2
acts_upstream_of_or_within
ISO
(PMID:35613276)
MGI
PMID:35613276
NCBI chr X:14,263,152...14,324,882
Ensembl chr X:14,265,296...14,333,751
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ERCC6
ERCC excision repair 6, chromatin remodeling factor
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr28:1,358,383...1,432,276
Ensembl chr28:1,361,107...1,427,162
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ERCC8
ERCC excision repair 8, CSA ubiquitin ligase complex subunit
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 2:47,502,777...47,559,012
Ensembl chr 2:47,503,762...47,558,889
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LIG4
DNA ligase 4
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr22:56,980,333...56,987,636
Ensembl chr22:56,980,622...56,983,357
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RNF168
ring finger protein 168
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr33:29,542,209...29,575,127
Ensembl chr33:29,539,182...29,628,248
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TOPBP1
DNA topoisomerase II binding protein 1
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr23:30,517,172...30,578,664
Ensembl chr23:30,516,125...30,578,108
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TP53BP1
tumor protein p53 binding protein 1
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr30:10,263,650...10,362,646
Ensembl chr30:10,263,650...10,336,134
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UVRAG
UV radiation resistance associated
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr21:22,505,968...22,821,027
Ensembl chr21:22,507,162...22,820,824
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XRCC6
X-ray repair cross complementing 6
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr10:23,637,905...23,661,618
Ensembl chr10:23,638,237...23,661,480
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ZBTB7A
zinc finger and BTB domain containing 7A
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr20:55,517,531...55,527,071
Ensembl chr20:55,505,916...55,523,736
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AUNIP
aurora kinase A and ninein interacting protein
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 2:74,097,435...74,116,824
Ensembl chr 2:74,097,508...74,118,085
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CYREN
cell cycle regulator of NHEJ
involved_in
IEA
InterPro Ensembl
GO_REF:0000002 GO_REF:0000107
NCBI chr16:12,994,508...13,003,632
Ensembl chr16:12,994,479...12,998,435
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ERCC6
ERCC excision repair 6, chromatin remodeling factor
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr28:1,358,383...1,432,276
Ensembl chr28:1,361,107...1,427,162
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HMGA2
high mobility group AT-hook 2
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr10:8,348,101...8,491,435
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HSF1
heat shock transcription factor 1
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr13:37,724,741...37,745,259
Ensembl chr13:37,724,759...37,745,252
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LOC119876110
aurora kinase A and ninein-interacting protein-like
involved_in
IEA
Ensembl
GO_REF:0000107
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MRE11
MRE11 homolog, double strand break repair nuclease
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr21:6,448,909...6,528,185
Ensembl chr21:6,449,822...6,527,119
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NUDT16L1
nudix hydrolase 16 like 1
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 6:36,711,351...36,713,931
Ensembl chr 6:36,711,671...36,713,896 Ensembl chr 6:36,711,671...36,713,896
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CYREN
cell cycle regulator of NHEJ
involved_in
ISO
(PMID:30017584)
DisProt
PMID:30017584
NCBI chr16:12,994,508...13,003,632
Ensembl chr16:12,994,479...12,998,435
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EFNB3
ephrin B3
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 5:32,588,062...32,592,390
Ensembl chr 5:32,574,134...32,594,333
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FH
fumarate hydratase
involved_in
ISO
(PMID:26237645)
UniProt
PMID:26237645
NCBI chr 7:32,900,250...32,927,436
Ensembl chr 7:32,901,586...32,927,412
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KMT5B
lysine methyltransferase 5B
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr18:49,655,783...49,691,899
Ensembl chr18:49,637,610...49,827,034
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KMT5C
lysine methyltransferase 5C
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 1:102,334,687...102,342,090
Ensembl chr 1:102,333,543...102,342,118
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LOC485121
lysine-specific demethylase 4D
acts_upstream_of_or_within
ISO
(PMID:24550317)
MGI
PMID:24550317
NCBI chr21:6,002,292...6,037,344
Ensembl chr21:5,987,723...6,004,783
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MAD2L2
mitotic arrest deficient 2 like 2
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 2:84,539,724...84,549,402
Ensembl chr 2:84,545,226...84,549,356
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PARP3
poly(ADP-ribose) polymerase family member 3
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr20:37,767,336...37,774,269
Ensembl chr20:37,767,505...37,773,770
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PNKP
polynucleotide kinase 3'-phosphatase
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 1:106,695,649...106,707,229
Ensembl chr 1:106,694,589...106,702,150
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PRKDC
protein kinase, DNA-activated, catalytic subunit
involved_in
ISS IEA
UniProt Ensembl
GO_REF:0000024 GO_REF:0000107
NCBI chr29:24,904...243,926
Ensembl chr29:35,007...243,895
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RIF1
replication timing regulatory factor 1
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr19:52,661,278...52,711,969
Ensembl chr19:52,661,155...52,709,279
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SETMAR
SET domain without mariner transposase fusion
involved_in
ISO
(PMID:20620605), (PMID:21491884)
UniProt
PMID:20620605 PMID:21491884
NCBI chr20:13,214,241...13,224,020
Ensembl chr20:13,214,241...13,224,020
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SHLD1
shieldin complex subunit 1
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr24:15,957,863...16,037,336
Ensembl chr24:15,957,852...16,038,008
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SHLD2
shieldin complex subunit 2
involved_in
ISO
(PMID:29656893), (PMID:29789392)
UniProt
PMID:29656893 PMID:29789392
NCBI chr 4:34,665,111...34,740,645
Ensembl chr 4:34,688,245...34,763,705
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SHLD3
shieldin complex subunit 3
involved_in
ISO
(PMID:29656893)
UniProt
PMID:29656893
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SMCHD1
structural maintenance of chromosomes flexible hinge domain containing 1
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 7:69,359,286...69,505,067
Ensembl chr 7:69,358,447...69,621,067
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TOP2B
DNA topoisomerase II beta
ISO
RGD
PMID:22019940
RGD:13432143
NCBI chr23:18,159,521...18,206,413
Ensembl chr23:18,146,095...18,206,287
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WRAP53
WD repeat containing antisense to TP53
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 5:32,574,153...32,586,222
Ensembl chr 5:32,574,134...32,594,333
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ACTR2
actin related protein 2
NOT|involved_in
ISO
(PMID:29925947)
UniProt
PMID:29925947
NCBI chr10:64,696,068...64,733,027
Ensembl chr10:64,696,111...64,730,553
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LOC100688177
protein DEK-like
acts_upstream_of_or_within
ISO
(PMID:21653549)
MGI
PMID:21653549
NCBI chr 3:10,279,204...10,280,935
G
MRNIP
MRN complex interacting protein
involved_in
ISO
(PMID:27568553)
UniProt
PMID:27568553
NCBI chr11:1,834,148...1,859,601
Ensembl chr11:1,833,967...1,859,347
G
NSD2
nuclear receptor binding SET domain protein 2
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:23241889)
Ensembl MGI
PMID:23241889
GO_REF:0000107
NCBI chr 3:62,164,888...62,228,006
Ensembl chr 3:62,167,939...62,228,035
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POT1
protection of telomeres 1
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr14:10,987,385...11,067,473
Ensembl chr14:10,987,494...11,066,956
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SHLD1
shieldin complex subunit 1
involved_in
IEA
InterPro
GO_REF:0000002
NCBI chr24:15,957,863...16,037,336
Ensembl chr24:15,957,852...16,038,008
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USP51
ubiquitin specific peptidase 51
involved_in
ISO
(PMID:27083998)
UniProt
PMID:27083998
NCBI chr X:47,055,226...47,059,552
G
WAS
WASP actin nucleation promoting factor
NOT|involved_in
ISO
(PMID:29925947)
UniProt
PMID:29925947
NCBI chr X:41,882,240...41,890,053
Ensembl chr X:41,882,875...41,890,058
Term paths to the root one shortest all shortest one longest all longest one shortest and longest all