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ONTOLOGY REPORT - ANNOTATIONS


Term:DNA metabolic process
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Accession:GO:0006259 term browser browse the term
Definition:Any cellular metabolic process involving deoxyribonucleic acid. This is one of the two main types of nucleic acid, consisting of a long, unbranched macromolecule formed from one, or more commonly, two, strands of linked deoxyribonucleotides.
Synonyms:exact_synonym: DNA metabolism;   cellular DNA metabolism
 alt_id: GO:0055132



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DNA metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnase2b deoxyribonuclease 2 beta involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000002
(MGI:1891506|PMID:10497274)
InterPro
RGD
PMID:10497274 GO_REF:0000002 MGI:1891506 NCBI chr 2:235,470,915...235,515,211
Ensembl chr 2:235,470,919...235,486,295
JBrowse link
G Dntt DNA nucleotidylexotransferase involved_in
acts_upstream_of_or_within
ISO (PMID:11473582)
(MGI:53124|PMID:8464703)
RGD PMID:8464703 PMID:11473582 MGI:53124 NCBI chr 1:239,856,391...239,888,283
Ensembl chr 1:239,856,391...239,888,282
JBrowse link
G Fen1 flap structure-specific endonuclease 1 acts_upstream_of_or_within ISO (MGI:2183876|PMID:12162748) RGD PMID:12162748 MGI:2183876 NCBI chr 1:206,845,126...206,849,821
Ensembl chr 1:206,844,884...206,850,003
JBrowse link
G Mki67 marker of proliferation Ki-67 IEP RGD PMID:9303485 RGD:2317713 NCBI chr 1:190,496,319...190,522,983
Ensembl chr 1:190,496,319...190,522,762
JBrowse link
G Mms19 MMS19 homolog, cytosolic iron-sulfur assembly component involved_in ISO (PMID:22678361) RGD PMID:22678361 NCBI chr 1:240,757,279...240,794,291
Ensembl chr 1:240,757,282...240,794,288
JBrowse link
G Nme1 NME/NM23 nucleoside diphosphate kinase 1 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr10:78,907,036...78,929,659
Ensembl chr10:78,906,083...78,916,408
JBrowse link
G Parp1 poly (ADP-ribose) polymerase 1 acts_upstream_of_or_within ISO MGI:1857862 (MGI:2157189|PMID:11756244), (MGI:2656673|PMID:12707040) RGD PMID:11756244 PMID:12707040 MGI:2157189 MGI:2656673 NCBI chr13:92,307,593...92,339,406
Ensembl chr13:92,307,586...92,339,404
JBrowse link
G Pld3 phospholipase D family, member 3 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 1:82,821,863...82,844,280
Ensembl chr 1:82,821,875...82,844,072
JBrowse link
G Pld4 phospholipase D family, member 4 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 6:131,818,860...131,827,457
Ensembl chr 6:131,818,860...131,826,376
JBrowse link
G Ptbp1 polypyrimidine tract binding protein 1 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 7:9,842,574...9,852,332
Ensembl chr 7:9,842,574...9,852,397
JBrowse link
G Rdm1 RAD52 motif containing 1 involved_in IEA GO_REF:0000117 UniProt GO_REF:0000117 NCBI chr10:86,562,871...86,573,034
Ensembl chr10:86,539,553...86,573,034
JBrowse link
G Rexo2 RNA exonuclease 2 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 8:48,811,900...48,823,622
Ensembl chr 8:48,811,900...48,823,622
JBrowse link
G Tatdn1 TatD DNase domain containing 1 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 7:90,451,025...90,481,000
Ensembl chr 7:90,441,079...90,481,133
JBrowse link
G Trex1 three prime repair exonuclease 1 involved_in ISO (MGI:5493219|PMID:11279105) RGD PMID:11279105 MGI:5493219 NCBI chr 8:109,706,613...109,707,913
Ensembl chr 8:109,706,613...109,708,796
JBrowse link
G Trex2 three prime repair exonuclease 2 involved_in ISO (PMID:11279105) RGD PMID:11279105 NCBI chr  X:151,151,862...151,153,470
Ensembl chr  X:151,151,864...151,153,479
JBrowse link
G Wrn WRN RecQ like helicase involved_in
acts_upstream_of_or_within
ISO (PMID:16622405)
MGI:2156622 (MGI:2157189|PMID:11756244), (MGI:2656673|PMID:12707040)
RGD PMID:11756244 PMID:12707040 PMID:16622405 MGI:2157189 MGI:2656673 NCBI chr16:58,763,517...58,898,604
Ensembl chr16:58,763,504...58,895,450
JBrowse link
apoptotic DNA fragmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dffa DNA fragmentation factor subunit alpha involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 5:159,540,718...159,553,639
Ensembl chr 5:159,540,715...159,553,633
JBrowse link
G Dffb DNA fragmentation factor subunit beta acts_upstream_of_or_within
involved_in
IDA
ISO
IEA
IBA
(PMID:15572351)
(PMID:22253444)
GO_REF:0000107
PMID:21873635
RGD
Ensembl
PMID:15572351 PMID:22253444 PMID:11425895 PMID:21873635 GO_REF:0000107, RGD:628524, RGD:13792537 NCBI chr 5:164,522,446...164,534,733
Ensembl chr 5:164,522,463...164,534,628
JBrowse link
G Dicer1 dicer 1 ribonuclease III involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:123,627,529...123,692,278
Ensembl chr 6:123,631,250...123,693,965
JBrowse link
G Dnase1l3 deoxyribonuclease 1-like 3 acts_upstream_of_or_within
involved_in
TAS
ISO
IBA
(MGI:2385551|PMID:12050166)
PMID:21873635
(PMID:23229555)
RGD PMID:12050166 PMID:23229555 PMID:9665719 PMID:21873635 MGI:2385551, RGD:728743, RGD:13792537 NCBI chr15:16,922,335...16,948,322
Ensembl chr15:16,922,335...16,948,317
JBrowse link
G Dnase2 deoxyribonuclease 2, lysosomal involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:23,244,661...23,247,329
Ensembl chr19:23,244,664...23,247,376
JBrowse link
G Dnase2b deoxyribonuclease 2 beta involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:235,470,915...235,515,211
Ensembl chr 2:235,470,919...235,486,295
JBrowse link
G Endog endonuclease G involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:3034030|MGI:3514265 (MGI:3029597|PMID:14663139)
RGD PMID:14663139 PMID:21873635 MGI:3029597, RGD:13792537 NCBI chr 3:13,449,113...13,451,715
Ensembl chr 3:13,449,086...13,451,932
JBrowse link
G Exog exo/endonuclease G involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:119,184,974...119,204,819
Ensembl chr 8:119,185,136...119,204,672
JBrowse link
G Foxl2 forkhead box L2 involved_in ISO (PMID:16153597) RGD PMID:16153597 NCBI chr 8:99,512,971...99,514,500
Ensembl chr 8:99,513,303...99,514,427
JBrowse link
base-excision repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apex1 apurinic/apyrimidinic endodeoxyribonuclease 1 involved_in ISO
IBA
(PMID:8932386)
PMID:21873635
RGD PMID:8932386 PMID:21873635 RGD:13792537 NCBI chr15:24,144,595...24,146,785
Ensembl chr15:24,144,362...24,146,785
JBrowse link
G Apex2 apurinic/apyrimidinic endodeoxyribonuclease 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:19,425,684...19,508,459
Ensembl chr  X:19,487,419...19,508,439
JBrowse link
G Dna2 DNA replication helicase/nuclease 2 involved_in ISO
IEA
(PMID:18995831)
GO_REF:0000107
RGD
Ensembl
PMID:18995831 GO_REF:0000107 NCBI chr20:25,661,652...25,690,598
Ensembl chr20:25,662,055...25,716,319
JBrowse link
G Ercc6 ERCC excision repair 6, chromatin remodeling factor involved_in ISO (PMID:9973627) RGD PMID:9973627 NCBI chr16:7,764,983...7,835,587
Ensembl chr16:7,765,013...7,835,587
JBrowse link
G Fen1 flap structure-specific endonuclease 1 involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 1:206,845,126...206,849,821
Ensembl chr 1:206,844,884...206,850,003
JBrowse link
G Hmga1 high mobility group AT-hook 1 involved_in ISO (PMID:19465398) RGD PMID:19465398 NCBI chr20:5,611,088...5,618,755
Ensembl chr20:5,611,694...5,618,752
JBrowse link
G Hmga2 high mobility group AT-hook 2 involved_in ISO
ISS
(PMID:19465398)
GO_REF:0000024
RGD
UniProt
PMID:19465398 GO_REF:0000024 NCBI chr 7:55,877,145...55,998,813
Ensembl chr 7:55,880,112...55,994,784
JBrowse link
G Hmgb1 high mobility group box 1 involved_in ISO (MGI:3722031|PMID:17803946) RGD PMID:17803946 MGI:3722031 NCBI chr12:5,973,062...5,978,565
Ensembl chr12:5,901,586...5,978,565
JBrowse link
G Huwe1 HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1 involved_in ISS
IBA
ISO
GO_REF:0000024
PMID:21873635
(PMID:19713937)
UniProt
RGD
PMID:19713937 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr  X:20,871,278...21,001,378
Ensembl chr  X:20,873,795...21,001,262
JBrowse link
G Lig1 DNA ligase 1 involved_in ISO (PMID:19589734) RGD PMID:19589734 NCBI chr 1:74,165,688...74,204,400
Ensembl chr 1:74,165,842...74,204,413
JBrowse link
G LOC100362927 replication protein A3-like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:45,908,653...45,909,063
Ensembl chr12:45,908,683...45,909,048
JBrowse link
G Mpg N-methylpurine-DNA glycosylase involved_in
acts_upstream_of_or_within
IEA
ISO
IBA
GO_REF:0000002
GO_REF:0000107
MGI:2148592|MGI:2675730 (MGI:2181327|PMID:9371767), (MGI:3028824|PMID:15177041)
PMID:21873635
InterPro
Ensembl
RGD
PMID:9371767 PMID:15177041 PMID:21873635 GO_REF:0000002 GO_REF:0000107 MGI:2181327 MGI:3028824, RGD:13792537 NCBI chr10:15,396,246...15,402,528
Ensembl chr10:15,395,782...15,402,520
JBrowse link
G Mutyh mutY DNA glycosylase involved_in IEA
IBA
GO_REF:0000104
PMID:21873635
UniProt PMID:21873635 GO_REF:0000104, RGD:13792537 NCBI chr 5:130,274,034...130,286,149
Ensembl chr 5:130,274,122...130,286,146
JBrowse link
G Neil1 nei-like DNA glycosylase 1 involved_in IBA
ISO
PMID:21873635
(PMID:17611195)
RGD PMID:17611195 PMID:21873635 RGD:13792537 NCBI chr 8:57,550,142...57,556,884
Ensembl chr 8:57,550,147...57,556,258
JBrowse link
G Neil2 nei-like DNA glycosylase 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:37,444,676...37,454,863
Ensembl chr15:37,445,381...37,454,863
JBrowse link
G Neil3 nei-like DNA glycosylase 3 involved_in ISO
IBA
(PMID:23755964)
(MGI:4440390|PMID:20185759)
PMID:21873635
RGD PMID:20185759 PMID:23755964 PMID:21873635 MGI:4440390, RGD:13792537 NCBI chr16:38,359,305...38,418,528
Ensembl chr16:38,359,371...38,418,527
JBrowse link
G Ogg1 8-oxoguanine DNA glycosylase acts_upstream_of_or_within IDA
ISO
MGI:2386943 (MGI:1349233|PMID:10570187), (MGI:894433|PMID:9207108) RGD PMID:9207108 PMID:10570187 PMID:9801319 MGI:1349233 MGI:894433, RGD:729091 NCBI chr 4:146,474,701...146,481,959
Ensembl chr 4:146,474,750...146,484,766
JBrowse link
G Parp1 poly (ADP-ribose) polymerase 1 acts_upstream_of_or_within ISO (MGI:2181257|PMID:11948190) RGD PMID:11948190 MGI:2181257 NCBI chr13:92,307,593...92,339,406
Ensembl chr13:92,307,586...92,339,404
JBrowse link
G Parp2 poly (ADP-ribose) polymerase 2 acts_upstream_of_or_within ISO (MGI:2181257|PMID:11948190) RGD PMID:11948190 MGI:2181257 NCBI chr15:24,034,069...24,044,340
Ensembl chr15:24,034,106...24,044,338
JBrowse link
G Polb DNA polymerase beta involved_in TAS
IBA
ISS
ISO
PMID:21873635
GO_REF:0000024
(PMID:16600869), (PMID:21362556)
UniProt
RGD
PMID:16600869 PMID:21362556 PMID:12388548 PMID:21873635 GO_REF:0000024, RGD:633643, RGD:13792537 NCBI chr16:69,379,438...69,402,710
Ensembl chr16:69,379,400...69,404,812
JBrowse link
G Polq DNA polymerase theta involved_in ISO (PMID:19188258) RGD PMID:19188258 NCBI chr11:63,673,796...63,775,905
Ensembl chr11:63,673,816...63,775,878
JBrowse link
G Rpa1 replication protein A1 involved_in ISO (PMID:9765279) RGD PMID:9765279 NCBI chr10:60,148,869...60,199,999
Ensembl chr10:60,148,793...60,199,949
JBrowse link
G Rpa2 replication protein A2 involved_in NAS
ISS
ISO
GO_REF:0000024
(PMID:9765279)
UniProt
RGD
PMID:9765279 PMID:9045683 GO_REF:0000024, RGD:729744 NCBI chr 5:144,976,789...144,989,445
Ensembl chr 5:144,976,748...144,987,350
JBrowse link
G Rpa3 replication protein A3 involved_in IBA
ISO
PMID:21873635
(PMID:9765279)
RGD PMID:9765279 PMID:21873635 RGD:13792537 NCBI chr 4:36,304,649...36,307,755
Ensembl chr 4:36,304,651...36,307,709
JBrowse link
G Sirt6 sirtuin 6 involved_in ISO (MGI:3663736|PMID:16439206) RGD PMID:16439206 MGI:3663736 NCBI chr 7:8,082,312...8,087,776
Ensembl chr 7:8,082,364...8,098,914
JBrowse link
G Slc25a16 solute carrier family 25 member 16 involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr20:25,661,158...25,717,558
Ensembl chr20:25,662,055...25,716,319
JBrowse link
G Smug1 single-strand-selective monofunctional uracil-DNA glycosylase 1 involved_in ISO
IDA
(PMID:12161446)
PMID:12718543
RGD PMID:12161446 PMID:12718543 RGD:634191 NCBI chr 7:134,288,565...134,302,179
Ensembl chr 7:134,287,675...134,297,226
JBrowse link
G Tdg thymine-DNA glycosylase involved_in ISO (PMID:21862836), (PMID:22327402)
(MGI:5287540|PMID:21817016)
RGD PMID:21817016 PMID:21862836 PMID:22327402 MGI:5287540 NCBI chr 7:21,077,853...21,097,617
Ensembl chr 7:21,077,853...21,097,567
JBrowse link
G Ung uracil-DNA glycosylase involved_in IDA
ISO
TAS
(PMID:12161446) RGD PMID:12161446 PMID:12167490 PMID:11292851 PMID:15297456 RGD:634481, RGD:1599704, RGD:1599703 NCBI chr12:42,485,276...42,494,217
Ensembl chr12:42,485,276...42,494,206
JBrowse link
G Usp47 ubiquitin specific peptidase 47 involved_in ISO (PMID:21362556) RGD PMID:21362556 NCBI chr 1:166,152,104...166,235,312
Ensembl chr 1:166,152,199...166,235,312
JBrowse link
G Wrn WRN RecQ like helicase involved_in ISO (PMID:17611195) RGD PMID:17611195 NCBI chr16:58,763,517...58,898,604
Ensembl chr16:58,763,504...58,895,450
JBrowse link
G Xpa XPA, DNA damage recognition and repair factor involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:60,431,673...60,476,438
Ensembl chr 5:60,431,673...60,475,726
JBrowse link
G Xrcc1 X-ray repair cross complementing 1 involved_in TAS
IBA
IDA
PMID:21873635 RGD
GO_Central
PMID:11056294 PMID:21873635 PMID:17412650 RGD:727220, RGD:13792537, RGD:2302580 NCBI chr 1:80,140,495...80,168,705
Ensembl chr 1:80,141,207...80,168,701
JBrowse link
base-excision repair, AP site formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ercc5 ERCC excision repair 5, endonuclease involved_in ISO (PMID:9927729) RGD PMID:9927729 NCBI chr 9:46,309,477...46,354,478
Ensembl chr 9:46,309,389...46,354,472
JBrowse link
G Nthl1 nth-like DNA glycosylase 1 involved_in IBA
ISO
PMID:21873635
(PMID:15358233), (PMID:9927729)
RGD PMID:9927729 PMID:15358233 PMID:21873635 RGD:13792537 NCBI chr10:13,655,791...13,661,958
Ensembl chr10:13,655,785...13,661,957
JBrowse link
G Ogg1 8-oxoguanine DNA glycosylase involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:146,474,701...146,481,959
Ensembl chr 4:146,474,750...146,484,766
JBrowse link
G Tdg thymine-DNA glycosylase involved_in IBA
ISO
PMID:21873635
(PMID:11889051), (PMID:18512959)
RGD PMID:11889051 PMID:18512959 PMID:21873635 RGD:13792537 NCBI chr 7:21,077,853...21,097,617
Ensembl chr 7:21,077,853...21,097,567
JBrowse link
base-excision repair, AP site formation via deaminated base removal term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ung uracil-DNA glycosylase involved_in ISO (PMID:18973764) RGD PMID:18973764 NCBI chr12:42,485,276...42,494,217
Ensembl chr12:42,485,276...42,494,206
JBrowse link
base-excision repair, DNA ligation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lig3 DNA ligase 3 involved_in IDA
ISO
IBA
(PMID:24674627)
(PMID:19589734)
PMID:21873635
RGD PMID:19589734 PMID:24674627 PMID:17412650 PMID:21873635 RGD:2302580, RGD:13792537 NCBI chr10:67,717,796...67,741,141
Ensembl chr10:67,717,812...67,798,414
JBrowse link
base-excision repair, gap-filling term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pcna proliferating cell nuclear antigen acts_upstream_of_or_within ISO (MGI:3045901|PMID:15177179) RGD PMID:15177179 MGI:3045901 NCBI chr 3:119,499,039...119,502,911
Ensembl chr 3:119,498,810...119,502,995
JBrowse link
G Polb DNA polymerase beta acts_upstream_of_or_within IDA
ISO
(MGI:3045901|PMID:15177179) RGD PMID:15177179 PMID:17412650 MGI:3045901, RGD:2302580 NCBI chr16:69,379,438...69,402,710
Ensembl chr16:69,379,400...69,404,812
JBrowse link
G Pold1 DNA polymerase delta 1, catalytic subunit involved_in
acts_upstream_of_or_within
IBA
IEA
ISO
PMID:21873635
GO_REF:0000107
(MGI:3045901|PMID:15177179)
(PMID:10559260), (PMID:10559261)
Ensembl
RGD
PMID:10559260 PMID:10559261 PMID:15177179 PMID:21873635 GO_REF:0000107 MGI:3045901, RGD:13792537 NCBI chr 1:95,025,462...95,041,559
Ensembl chr 1:95,025,499...95,036,465
JBrowse link
G Pole DNA polymerase epsilon, catalytic subunit involved_in ISO
IBA
(PMID:10559260)
PMID:21873635
RGD PMID:10559260 PMID:21873635 RGD:13792537 NCBI chr12:46,345,420...46,393,984
Ensembl chr12:46,345,420...46,393,939
JBrowse link
G Polg DNA polymerase gamma, catalytic subunit acts_upstream_of_or_within ISO (PMID:15177179) RGD PMID:15177179 NCBI chr 1:133,382,764...133,399,578
Ensembl chr 1:133,382,766...133,398,567
JBrowse link
G Poll DNA polymerase lambda involved_in ISO
ISS
(PMID:19806195)
GO_REF:0000024
RGD
UniProt
PMID:19806195 GO_REF:0000024 NCBI chr 1:244,400,202...244,408,762
Ensembl chr 1:244,400,204...244,408,662
JBrowse link
C-5 methylation of cytosine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnmt1 DNA methyltransferase 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000002
(MGI:2152690|PMID:11399088)
InterPro
RGD
PMID:11399088 GO_REF:0000002 MGI:2152690 NCBI chr 8:19,440,611...19,486,659
Ensembl chr 8:19,440,611...19,486,659
JBrowse link
G Dnmt3a DNA methyltransferase 3 alpha involved_in
acts_upstream_of_or_within
ISO (PMID:25383530)
MGI:1261819 (MGI:3768461|PMID:17938196)
RGD PMID:17938196 PMID:25383530 MGI:3768461 NCBI chr 6:26,791,517...26,902,161
Ensembl chr 6:26,822,609...26,896,687
JBrowse link
G Dnmt3b DNA methyltransferase 3 beta acts_upstream_of_or_within
involved_in
ISO
IBA
(MGI:5811689|PMID:27856912)
PMID:21873635
(PMID:32083663)
RGD PMID:27856912 PMID:32083663 PMID:21873635 MGI:5811689, RGD:13792537 NCBI chr 3:142,130,592...142,169,124
Ensembl chr 3:142,130,592...142,169,124
JBrowse link
G Dnmt3l DNA methyltransferase 3 like involved_in ISO (PMID:25383530), (PMID:32083663) RGD PMID:25383530 PMID:32083663 NCBI chr20:10,614,933...10,629,516
Ensembl chr20:10,614,934...10,629,516
JBrowse link
G Stpg4 sperm-tail PG-rich repeat containing 4 acts_upstream_of_or_within ISO (MGI:5762940|PMID:23560077) RGD PMID:23560077 MGI:5762940 NCBI chr 6:7,108,827...7,158,519
Ensembl chr 6:7,108,869...7,151,390
JBrowse link
chiasma assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Brip1 BRCA1 interacting helicase 1 acts_upstream_of_or_within ISO MGI:4129733 (MGI:5700253|PMID:26490168) RGD PMID:26490168 MGI:5700253 NCBI chr10:70,907,266...71,031,502
Ensembl chr10:70,907,371...71,030,324
JBrowse link
G Ccnb1ip1 cyclin B1 interacting protein 1 acts_upstream_of_or_within
involved_in
ISO MGI:3050548 (MGI:3757893|PMID:17784788)
(MGI:5545848|PMID:24390283)
RGD PMID:17784788 PMID:24390283 MGI:3757893 MGI:5545848 NCBI chr15:24,014,905...24,031,357
Ensembl chr15:24,014,908...24,028,475
JBrowse link
G Msh5 mutS homolog 5 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:3,773,867...3,793,337
Ensembl chr20:3,776,942...3,793,336
JBrowse link
G Rnf212 ring finger protein 212 involved_in ISO (MGI:5545848|PMID:24390283) RGD PMID:24390283 MGI:5545848 NCBI chr14:949,397...988,377
Ensembl chr14:949,448...987,831
JBrowse link
G Sycp1 synaptonemal complex protein 1 involved_in
acts_upstream_of_or_within
IBA
ISO
IEA
PMID:21873635
MGI:109542 (MGI:5315075|PMID:22164254)
GO_REF:0000107
RGD
Ensembl
PMID:22164254 PMID:21873635 GO_REF:0000107 MGI:5315075, RGD:13792537 NCBI chr 2:190,296,688...190,456,687
Ensembl chr 2:190,296,954...190,456,737
JBrowse link
G Sycp3 synaptonemal complex protein 3 involved_in
acts_upstream_of_or_within
ISO (MGI:2179610|PMID:12004129)
MGI:105931 (MGI:5315075|PMID:22164254)
RGD PMID:12004129 PMID:22164254 MGI:2179610 MGI:5315075 NCBI chr 7:22,874,055...22,888,512
Ensembl chr 7:22,874,055...22,888,511
JBrowse link
G Tex11 testis expressed 11 acts_upstream_of_or_within ISO MGI:3526163 (MGI:3774244|PMID:18316482) RGD PMID:18316482 MGI:3774244 NCBI chr  X:65,932,904...66,196,525
Ensembl chr  X:65,932,988...66,196,187
JBrowse link
G Ube2b ubiquitin-conjugating enzyme E2B acts_upstream_of_or_within ISO MGI:2183933 (MGI:2450033|PMID:12556476) RGD PMID:12556476 MGI:2450033 NCBI chr10:36,248,434...36,263,379
Ensembl chr10:36,248,438...36,264,665
JBrowse link
chromatin reprogramming in the zygote term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mettl23 methyltransferase like 23 involved_in ISS
ISO
GO_REF:0000024
(MGI:6103984|PMID:28930672)
UniProt
RGD
PMID:28930672 GO_REF:0000024 MGI:6103984 NCBI chr10:102,047,090...102,053,379
Ensembl chr10:102,047,314...102,051,977
JBrowse link
DNA ADP-ribosylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Parp1 poly (ADP-ribose) polymerase 1 involved_in ISO
ISS
(PMID:27471034)
GO_REF:0000024
RGD
UniProt
PMID:27471034 GO_REF:0000024 NCBI chr13:92,307,593...92,339,406
Ensembl chr13:92,307,586...92,339,404
JBrowse link
G Parp2 poly (ADP-ribose) polymerase 2 involved_in ISO (PMID:27471034) RGD PMID:27471034 NCBI chr15:24,034,069...24,044,340
Ensembl chr15:24,034,106...24,044,338
JBrowse link
G Parp3 poly (ADP-ribose) polymerase family, member 3 involved_in ISO (PMID:29361132) RGD PMID:29361132 NCBI chr 8:107,111,010...107,117,073
Ensembl chr 8:107,111,012...107,116,782
JBrowse link
DNA biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccn2 cellular communication network factor 2 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:20,802,199...20,805,315
Ensembl chr 1:20,802,199...20,805,734
JBrowse link
G Dntt DNA nucleotidylexotransferase involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 1:239,856,391...239,888,283
Ensembl chr 1:239,856,391...239,888,282
JBrowse link
G Lig1 DNA ligase 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 1:74,165,688...74,204,400
Ensembl chr 1:74,165,842...74,204,413
JBrowse link
G Lig3 DNA ligase 3 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:67,717,796...67,741,141
Ensembl chr10:67,717,812...67,798,414
JBrowse link
G Lig4 DNA ligase 4 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr16:79,518,393...79,526,956
Ensembl chr16:79,518,312...79,527,040
JBrowse link
G Lox lysyl oxidase acts_upstream_of_or_within ISO MGI:3610732 (MGI:5603515|PMID:19458888) RGD PMID:19458888 MGI:5603515 NCBI chr18:45,964,311...46,041,477
Ensembl chr18:45,967,343...46,041,477
JBrowse link
G Pam16 presequence translocase associated motor 16 acts_upstream_of_or_within ISO (MGI:4837988|PMID:20719856) RGD PMID:20719856 MGI:4837988 NCBI chr10:10,942,534...10,950,654
Ensembl chr10:10,943,001...10,950,649
JBrowse link
G Phb1 prohibitin 1 acts_upstream_of_or_within ISO (MGI:3814796|PMID:18480465) RGD PMID:18480465 MGI:3814796 NCBI chr10:80,605,268...80,618,043
Ensembl chr10:80,605,251...80,618,042
JBrowse link
G Pola1 DNA polymerase alpha 1, catalytic subunit acts_upstream_of_or_within
involved_in
IMP
ISO
IEA
(MGI:1203906|PMID:9584195)
(MGI:64718|PMID:8106564)
GO_REF:0000108
RGD
GOC
PMID:8106564 PMID:9584195 PMID:9099618 GO_REF:0000108 MGI:1203906 MGI:64718, RGD:7247275 NCBI chr  X:58,034,617...58,348,612
Ensembl chr  X:58,034,619...58,348,536
JBrowse link
G Pola2 DNA polymerase alpha 2, accessory subunit involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 1:203,227,183...203,251,350
Ensembl chr 1:203,203,388...203,251,348
JBrowse link
G Polb DNA polymerase beta involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr16:69,379,438...69,402,710
Ensembl chr16:69,379,400...69,404,812
JBrowse link
G Pold1 DNA polymerase delta 1, catalytic subunit involved_in IMP
ISO
(MGI:6383350|PMID:11595739)
(PMID:11595739)
RGD PMID:11595739 PMID:11959615 MGI:6383350, RGD:7247274 NCBI chr 1:95,025,462...95,041,559
Ensembl chr 1:95,025,499...95,036,465
JBrowse link
G Pold2 DNA polymerase delta 2, accessory subunit involved_in ISO (PMID:11595739)
(MGI:6383350|PMID:11595739)
RGD PMID:11595739 MGI:6383350 NCBI chr14:80,748,971...80,755,188
Ensembl chr14:80,748,974...80,755,160
JBrowse link
G Pold3 DNA polymerase delta 3, accessory subunit involved_in ISO (PMID:11595739)
(MGI:6383350|PMID:11595739)
RGD PMID:11595739 MGI:6383350 NCBI chr 1:154,417,893...154,456,687
Ensembl chr 1:154,418,084...154,456,665
JBrowse link
G Pole DNA polymerase epsilon, catalytic subunit IMP RGD PMID:11959615 RGD:7247274 NCBI chr12:46,345,420...46,393,984
Ensembl chr12:46,345,420...46,393,939
JBrowse link
G Polg DNA polymerase gamma, catalytic subunit involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 1:133,382,764...133,399,578
Ensembl chr 1:133,382,766...133,398,567
JBrowse link
G Polg2 DNA polymerase gamma 2, accessory subunit involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr10:91,712,586...91,723,008
Ensembl chr10:91,712,586...91,723,008
JBrowse link
G Polh DNA polymerase eta acts_upstream_of_or_within ISO (MGI:1860718|PMID:10871396) RGD PMID:10871396 MGI:1860718 NCBI chr 9:14,778,355...14,813,210
Ensembl chr 9:14,777,888...14,812,723
JBrowse link
G Poli DNA polymerase iota acts_upstream_of_or_within ISO (MGI:2671627|PMID:12925679) RGD PMID:12925679 MGI:2671627 NCBI chr18:64,116,774...64,134,373
Ensembl chr18:64,116,774...64,163,418
JBrowse link
G Poll DNA polymerase lambda involved_in
acts_upstream_of_or_within
ISS
ISO
GO_REF:0000024
(MGI:1888768|PMID:10966791)
(PMID:19806195)
UniProt
RGD
PMID:10966791 PMID:19806195 GO_REF:0000024 MGI:1888768 NCBI chr 1:244,400,202...244,408,762
Ensembl chr 1:244,400,204...244,408,662
JBrowse link
G Polq DNA polymerase theta involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr11:63,673,796...63,775,905
Ensembl chr11:63,673,816...63,775,878
JBrowse link
G Smpd3 sphingomyelin phosphodiesterase 3 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(MGI:5518963|PMID:23651497)
Ensembl
RGD
PMID:23651497 GO_REF:0000107 MGI:5518963 NCBI chr19:34,162,337...34,245,786
Ensembl chr19:34,162,341...34,245,749
JBrowse link
G Sphk1 sphingosine kinase 1 acts_upstream_of_or_within ISO (MGI:5518963|PMID:23651497) RGD PMID:23651497 MGI:5518963 NCBI chr10:101,758,567...101,764,240
Ensembl chr10:101,758,711...101,764,240
JBrowse link
G Src SRC proto-oncogene, non-receptor tyrosine kinase IMP RGD PMID:9227431 RGD:150521729 NCBI chr 3:146,091,969...146,139,492
Ensembl chr 3:146,091,841...146,139,476
JBrowse link
G Terc telomerase RNA component involved_in ISO (PMID:19701182) RGD PMID:19701182 NCBI chr 2:112,815,654...112,816,041 JBrowse link
G Tert telomerase reverse transcriptase involved_in ISO (PMID:19701182), (PMID:9398860) RGD PMID:9398860 PMID:19701182 NCBI chr 1:29,637,213...29,659,509
Ensembl chr 1:29,637,506...29,659,561
JBrowse link
G Tk1 thymidine kinase 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:103,034,755...103,046,125
Ensembl chr10:103,031,521...103,046,920
JBrowse link
DNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dffb DNA fragmentation factor subunit beta involved_in ISO (PMID:19944011) RGD PMID:19944011 NCBI chr 5:164,522,446...164,534,733
Ensembl chr 5:164,522,463...164,534,628
JBrowse link
G Dnase1 deoxyribonuclease 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:11,498,930...11,505,151
Ensembl chr10:11,498,931...11,501,869
JBrowse link
G Dnase1l1 deoxyribonuclease 1-like 1 involved_in IEA
IBA
GO_REF:0000002
PMID:21873635
InterPro PMID:21873635 GO_REF:0000002, RGD:13792537 NCBI chr  X:152,056,942...152,065,518
Ensembl chr  X:152,056,942...152,065,518
JBrowse link
G Dnase1l2 deoxyribonuclease 1 like 2 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:5308556 (MGI:5308183|PMID:21307874)
RGD PMID:21307874 PMID:21873635 MGI:5308183, RGD:13792537 NCBI chr10:13,471,850...13,473,447
Ensembl chr10:13,471,479...13,473,763
JBrowse link
G Dnase1l3 deoxyribonuclease 1-like 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:16,922,335...16,948,322
Ensembl chr15:16,922,335...16,948,317
JBrowse link
G Trex1 three prime repair exonuclease 1 acts_upstream_of_or_within ISO MGI:3052754|MGI:5751220 (MGI:3834787|PMID:18724932), (MGI:4414715|PMID:19923437), (MGI:4848004|PMID:20871604), (MGI:5562498|PMID:23993650), (MGI:5637600|PMID:25848017) RGD PMID:18724932 PMID:19923437 PMID:20871604 PMID:23993650 PMID:25848017 MGI:3834787 MGI:4414715 MGI:4848004 MGI:5562498 MGI:5637600 NCBI chr 8:109,706,613...109,707,913
Ensembl chr 8:109,706,613...109,708,796
JBrowse link
DNA catabolic process, endonucleolytic term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apex1 apurinic/apyrimidinic endodeoxyribonuclease 1 involved_in ISO (PMID:1627644) RGD PMID:1627644 NCBI chr15:24,144,595...24,146,785
Ensembl chr15:24,144,362...24,146,785
JBrowse link
G Dnase1 deoxyribonuclease 1 involved_in ISS
ISO
IBA
PMID:29191910
(MGI:6094744|PMID:29191910)
PMID:21873635
RGD PMID:29191910 PMID:29191910 PMID:21873635 MGI:6094744, RGD:13464261, RGD:13792537 NCBI chr10:11,498,930...11,505,151
Ensembl chr10:11,498,931...11,501,869
JBrowse link
G Dnase1l1 deoxyribonuclease 1-like 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:152,056,942...152,065,518
Ensembl chr  X:152,056,942...152,065,518
JBrowse link
G Dnase1l2 deoxyribonuclease 1 like 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:13,471,850...13,473,447
Ensembl chr10:13,471,479...13,473,763
JBrowse link
G Dnase1l3 deoxyribonuclease 1-like 3 involved_in IBA
ISO
ISS
PMID:21873635
(MGI:6094744|PMID:29191910)
RGD PMID:29191910 PMID:21873635 PMID:29191910 MGI:6094744, RGD:13792537, RGD:13464261 NCBI chr15:16,922,335...16,948,322
Ensembl chr15:16,922,335...16,948,317
JBrowse link
G Fbh1 F-box DNA helicase 1 acts_upstream_of_or_within ISO (PMID:23361013) RGD PMID:23361013 NCBI chr17:66,749,506...66,787,590
Ensembl chr17:66,749,534...66,787,590
JBrowse link
G Mus81 MUS81 structure-specific endonuclease subunit acts_upstream_of_or_within ISO (PMID:23361013) RGD PMID:23361013 NCBI chr 1:202,790,295...202,796,008
Ensembl chr 1:202,790,466...202,795,843
JBrowse link
G Rexo4 REX4 homolog, 3'-5' exonuclease involved_in ISO (PMID:21602889) RGD PMID:21602889 NCBI chr 3:10,280,654...10,291,003
Ensembl chr 3:10,280,654...10,290,996
JBrowse link
G Setmar SET domain and mariner transposase fusion gene involved_in ISO (PMID:20521842), (PMID:21491884), (PMID:24573677) RGD PMID:20521842 PMID:21491884 PMID:24573677 NCBI chr 4:141,046,058...141,058,183
Ensembl chr 4:141,046,069...141,058,197
JBrowse link
DNA catabolic process, exonucleolytic term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Isg20 interferon stimulated exonuclease gene 20 involved_in IBA
ISO
PMID:21873635
(PMID:11401564)
RGD PMID:11401564 PMID:21873635 RGD:13792537 NCBI chr 1:132,829,303...132,837,027
Ensembl chr 1:132,815,123...132,837,027
JBrowse link
G Rexo4 REX4 homolog, 3'-5' exonuclease involved_in ISO (PMID:21602889) RGD PMID:21602889 NCBI chr 3:10,280,654...10,291,003
Ensembl chr 3:10,280,654...10,290,996
JBrowse link
G Trex1 three prime repair exonuclease 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:109,706,613...109,707,913
Ensembl chr 8:109,706,613...109,708,796
JBrowse link
G Trex2 three prime repair exonuclease 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:151,151,862...151,153,470
Ensembl chr  X:151,151,864...151,153,479
JBrowse link
G Xrn2 5'-3' exoribonuclease 2 involved_in ISO (PMID:15565158) RGD PMID:15565158 NCBI chr 3:134,436,916...134,509,308
Ensembl chr 3:134,437,109...134,509,306
JBrowse link
DNA cytosine deamination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aicda activation-induced cytidine deaminase involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:155,774,132...155,783,972
Ensembl chr 4:155,774,132...155,783,972
JBrowse link
G Apobec1 apolipoprotein B mRNA editing enzyme catalytic subunit 1 IDA RGD PMID:12697753 RGD:1358271 NCBI chr 4:155,800,030...155,828,515
Ensembl chr 4:155,800,887...155,827,390
JBrowse link
G Apobec3 apolipoprotein B mRNA editing enzyme catalytic subunit 3 involved_in ISO
IBA
(PMID:16571802), (PMID:21835787)
PMID:21873635
RGD PMID:16571802 PMID:21835787 PMID:21873635 RGD:13792537 NCBI chr 7:111,433,789...111,453,032
Ensembl chr 7:111,433,764...111,452,922
JBrowse link
G Cdadc1 cytidine and dCMP deaminase domain containing 1 involved_in ISO (PMID:26945630) RGD PMID:26945630 NCBI chr15:33,726,590...33,755,611
Ensembl chr15:33,723,435...33,755,576
JBrowse link
DNA dealkylation involved in DNA repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alkbh1 alkB homolog 1, histone H2A dioxygenase involved_in ISO (PMID:18603530) RGD PMID:18603530 NCBI chr 6:107,068,309...107,088,779
Ensembl chr 6:107,068,475...107,088,759
JBrowse link
G Alkbh2 alkB homolog 2, alpha-ketoglutarate-dependent dioxygenase involved_in IBA
ISO
PMID:21873635
(MGI:3796299|PMID:18519673)
(PMID:18432238), (PMID:20714506)
RGD PMID:18432238 PMID:18519673 PMID:20714506 PMID:21873635 MGI:3796299, RGD:13792537 NCBI chr12:42,494,187...42,500,929
Ensembl chr12:42,496,300...42,500,914
JBrowse link
G Alkbh3 alkB homolog 3, alpha-ketoglutarate-dependent dioxygenase involved_in ISS
ISO
GO_REF:0000024
(PMID:16858410), (PMID:20714506), (PMID:22055184)
(PMID:16858410), (PMID:22055184)
UniProt
RGD
PMID:16858410 PMID:20714506 PMID:22055184 GO_REF:0000024 NCBI chr 3:79,939,515...79,972,820
Ensembl chr 3:79,939,600...79,972,000
JBrowse link
G Ascc3 activating signal cointegrator 1 complex subunit 3 involved_in ISO
ISS
(PMID:22055184)
GO_REF:0000024
RGD
UniProt
PMID:22055184 GO_REF:0000024 NCBI chr20:53,510,137...53,795,446
Ensembl chr20:53,510,184...53,790,165
JBrowse link
G Fto FTO, alpha-ketoglutarate dependent dioxygenase involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(MGI:3817348|PMID:18775698)
(PMID:18775698), (PMID:20376003)
UniProt
Ensembl
RGD
PMID:18775698 PMID:20376003 GO_REF:0000024 GO_REF:0000107 MGI:3817348 NCBI chr19:15,284,898...15,692,142
Ensembl chr19:15,349,696...15,692,083
JBrowse link
G Mgmt O-6-methylguanine-DNA methyltransferase acts_upstream_of_or_within IDA
ISO
(MGI:50172|PMID:1554415) RGD PMID:1554415 PMID:15025514 MGI:50172, RGD:2316914 NCBI chr 1:191,710,980...191,937,760
Ensembl chr 1:191,710,930...191,937,756
JBrowse link
DNA deamination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Exosc3 exosome component 3 involved_in ISO (PMID:21255825) RGD PMID:21255825 NCBI chr 5:59,573,849...59,579,065
Ensembl chr 5:59,573,886...59,579,060
JBrowse link
G Exosc4 exosome component 4 involved_in ISO (PMID:21255825) RGD PMID:21255825 NCBI chr 7:108,047,831...108,050,573
Ensembl chr 7:108,047,831...108,050,573
JBrowse link
G Exosc5 exosome component 5 involved_in ISO (PMID:21255825) RGD PMID:21255825 NCBI chr 1:81,168,128...81,177,266
Ensembl chr 1:81,166,023...81,177,265
JBrowse link
G Exosc6 exosome component 6 involved_in ISO (PMID:21255825) RGD PMID:21255825 NCBI chr19:39,021,308...39,023,535
Ensembl chr19:39,022,183...39,023,515
JBrowse link
DNA demethylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aicda activation-induced cytidine deaminase involved_in ISO
IBA
(PMID:21496894)
PMID:21873635
RGD PMID:21496894 PMID:21873635 RGD:13792537 NCBI chr 4:155,774,132...155,783,972
Ensembl chr 4:155,774,132...155,783,972
JBrowse link
G Alkbh1 alkB homolog 1, histone H2A dioxygenase involved_in ISO (PMID:18603530), (PMID:30017583), (PMID:30392959) RGD PMID:18603530 PMID:30017583 PMID:30392959 NCBI chr 6:107,068,309...107,088,779
Ensembl chr 6:107,068,475...107,088,759
JBrowse link
G Alkbh4 alkB homolog 4, lysine demethylase involved_in ISO (MGI:6323482|PMID:30982744) RGD PMID:30982744 MGI:6323482 NCBI chr12:20,524,030...20,529,947
Ensembl chr12:20,524,030...20,529,947
JBrowse link
G Apex1 apurinic/apyrimidinic endodeoxyribonuclease 1 involved_in ISS
ISO
GO_REF:0000024
(PMID:21496894)
UniProt
RGD
PMID:21496894 GO_REF:0000024 NCBI chr15:24,144,595...24,146,785
Ensembl chr15:24,144,362...24,146,785
JBrowse link
G Apobec1 apolipoprotein B mRNA editing enzyme catalytic subunit 1 involved_in IBA
ISO
ISS
PMID:21873635
(MGI:5285126|PMID:21496894)
GO_REF:0000024
RGD
UniProt
PMID:21496894 PMID:21873635 GO_REF:0000024 MGI:5285126, RGD:13792537 NCBI chr 4:155,800,030...155,828,515
Ensembl chr 4:155,800,887...155,827,390
JBrowse link
G Apobec2 apolipoprotein B mRNA editing enzyme catalytic subunit 2 involved_in ISO
IBA
(PMID:21496894)
PMID:21873635
RGD PMID:21496894 PMID:21873635 RGD:13792537 NCBI chr 9:12,564,955...12,578,461
Ensembl chr 9:12,564,920...12,578,458
JBrowse link
G Apobec3 apolipoprotein B mRNA editing enzyme catalytic subunit 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:111,433,789...111,453,032
Ensembl chr 7:111,433,764...111,452,922
JBrowse link
G Eomes eomesodermin involved_in ISO (MGI:6220563|PMID:30186101) RGD PMID:30186101 MGI:6220563 NCBI chr 8:118,181,340...118,189,186
Ensembl chr 8:118,181,777...118,188,316
JBrowse link
G Fto FTO, alpha-ketoglutarate dependent dioxygenase involved_in ISO (PMID:18775698)
(MGI:3817348|PMID:18775698), (MGI:4430814|PMID:17991826)
RGD PMID:17991826 PMID:18775698 MGI:3817348 MGI:4430814 NCBI chr19:15,284,898...15,692,142
Ensembl chr19:15,349,696...15,692,083
JBrowse link
G Pax6 paired box 6 involved_in ISO
IEA
(MGI:6220563|PMID:30186101)
GO_REF:0000107
RGD
Ensembl
PMID:30186101 GO_REF:0000107 MGI:6220563 NCBI chr 3:92,128,772...92,157,022
Ensembl chr 3:92,135,637...92,157,014
JBrowse link
G Tdg thymine-DNA glycosylase involved_in ISO (MGI:5141157|PMID:21722948), (MGI:5287540|PMID:21817016), (MGI:5487523|PMID:21278727) RGD PMID:21278727 PMID:21722948 PMID:21817016 MGI:5141157 MGI:5287540 MGI:5487523 NCBI chr 7:21,077,853...21,097,617
Ensembl chr 7:21,077,853...21,097,567
JBrowse link
G Tet1 tet methylcytosine dioxygenase 1 involved_in
acts_upstream_of_or_within
ISO
IBA
(PMID:21496894)
(MGI:4822076|PMID:20639862)
(MGI:3844762|PMID:19372391), (MGI:5285126|PMID:21496894)
PMID:21873635
RGD PMID:19372391 PMID:20639862 PMID:21496894 PMID:21873635 MGI:3844762 MGI:4822076 MGI:5285126, RGD:13792537 NCBI chr20:25,761,042...25,840,926
Ensembl chr20:25,768,120...25,833,052
JBrowse link
G Tet2 tet methylcytosine dioxygenase 2 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
(MGI:4822076|PMID:20639862)
(PMID:24315485)
RGD PMID:20639862 PMID:24315485 PMID:21873635 MGI:4822076, RGD:13792537 NCBI chr 2:221,988,645...222,072,813
Ensembl chr 2:221,988,645...222,072,534
JBrowse link
G Tet3 tet methylcytosine dioxygenase 3 involved_in
acts_upstream_of_or_within
ISO
IBA
(MGI:5289702|PMID:21892189), (MGI:5432962|PMID:22722204), (MGI:5465527|PMID:21407207)
PMID:21873635
(MGI:5525037|PMID:23690950)
(MGI:4822076|PMID:20639862)
RGD PMID:20639862 PMID:21407207 PMID:21892189 PMID:22722204 PMID:23690950 More... MGI:4822076 MGI:5289702 MGI:5432962 MGI:5465527 MGI:5525037, RGD:13792537 NCBI chr 4:115,867,412...115,964,433
Ensembl chr 4:115,871,265...115,964,193
JBrowse link
DNA demethylation of male pronucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mettl23 methyltransferase like 23 acts_upstream_of_positive_effect
acts_upstream_of_or_within
ISS
ISO
GO_REF:0000024
(MGI:6103984|PMID:28930672)
UniProt
RGD
PMID:28930672 GO_REF:0000024 MGI:6103984 NCBI chr10:102,047,090...102,053,379
Ensembl chr10:102,047,314...102,051,977
JBrowse link
G Stpg4 sperm-tail PG-rich repeat containing 4 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
(MGI:6103984|PMID:28930672)
(MGI:5762940|PMID:23560077)
RGD PMID:23560077 PMID:28930672 PMID:21873635 MGI:5762940 MGI:6103984, RGD:13792537 NCBI chr 6:7,108,827...7,158,519
Ensembl chr 6:7,108,869...7,151,390
JBrowse link
G Tet3 tet methylcytosine dioxygenase 3 involved_in ISO (MGI:5289702|PMID:21892189), (MGI:5432962|PMID:22722204), (MGI:5465527|PMID:21407207) RGD PMID:21407207 PMID:21892189 PMID:22722204 MGI:5289702 MGI:5432962 MGI:5465527 NCBI chr 4:115,867,412...115,964,433
Ensembl chr 4:115,871,265...115,964,193
JBrowse link
DNA double-strand break processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Blm BLM RecQ like helicase involved_in ISO (PMID:21325134) RGD PMID:21325134 NCBI chr 1:134,409,832...134,496,073
Ensembl chr 1:134,409,857...134,484,312
JBrowse link
G Dna2 DNA replication helicase/nuclease 2 involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:21325134)
UniProt
Ensembl
RGD
PMID:21325134 GO_REF:0000024 GO_REF:0000107 NCBI chr20:25,661,652...25,690,598
Ensembl chr20:25,662,055...25,716,319
JBrowse link
G Exd2 exonuclease 3'-5' domain containing 2 involved_in ISO (PMID:26807646) RGD PMID:26807646 NCBI chr 6:100,116,867...100,150,452
Ensembl chr 6:100,116,867...100,150,442
JBrowse link
G Setmar SET domain and mariner transposase fusion gene involved_in ISO (PMID:21491884) RGD PMID:21491884 NCBI chr 4:141,046,058...141,058,183
Ensembl chr 4:141,046,069...141,058,197
JBrowse link
G Slc25a16 solute carrier family 25 member 16 involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr20:25,661,158...25,717,558
Ensembl chr20:25,662,055...25,716,319
JBrowse link
G Smarcad1 SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1` involved_in ISO
ISS
(PMID:22960744)
GO_REF:0000024
RGD
UniProt
PMID:22960744 GO_REF:0000024 NCBI chr 4:94,311,441...94,379,184
Ensembl chr 4:94,311,489...94,372,563
JBrowse link
G Ube2n ubiquitin-conjugating enzyme E2N involved_in ISO (PMID:17349954) RGD PMID:17349954 NCBI chr 7:30,154,330...30,184,373
Ensembl chr 7:30,154,616...30,184,355
JBrowse link
G Ube2v2 ubiquitin conjugating enzyme E2 V2 involved_in ISO (PMID:17349954) RGD PMID:17349954 NCBI chr11:85,304,528...85,338,430
Ensembl chr11:85,304,526...85,336,369
JBrowse link
DNA double-strand break processing involved in repair via single-strand annealing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07031480.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G Helq helicase, POLQ-like involved_in ISO
IEA
(PMID:34937945)
GO_REF:0000107
RGD
Ensembl
PMID:34937945 GO_REF:0000107 NCBI chr14:8,818,582...8,862,926
Ensembl chr14:8,818,592...8,862,960
JBrowse link
G Rad52 RAD52 homolog, DNA repair protein involved_in
acts_upstream_of_or_within
ISO (MGI:5619739|PMID:22912580)
(PMID:19506022)
RGD PMID:19506022 PMID:22912580 MGI:5619739 NCBI chr 4:153,106,062...153,128,598
Ensembl chr 4:153,106,062...153,128,207
JBrowse link
G Rbbp8 RB binding protein 8, endonuclease involved_in IBA
IEA
ISO
PMID:21873635
GO_REF:0000002
(PMID:18716619), (PMID:19202191)
InterPro
RGD
PMID:18716619 PMID:19202191 PMID:21873635 GO_REF:0000002, RGD:13792537 NCBI chr18:2,922,985...2,988,851
Ensembl chr18:2,921,286...2,988,846
JBrowse link
G Rnf138 ring finger protein 138 involved_in IBA
ISS
ISO
PMID:21873635
GO_REF:0000024
(PMID:26502057)
UniProt
RGD
PMID:26502057 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr18:12,291,557...12,315,931
Ensembl chr18:12,291,590...12,315,930
JBrowse link
G Slx1b SLX1 homolog B, structure-specific endonuclease subunit involved_in ISO (PMID:19595721) RGD PMID:19595721 NCBI chr 1:181,286,190...181,291,739
Ensembl chr 1:181,283,921...181,291,775
JBrowse link
G Slx4 SLX4 structure-specific endonuclease subunit involved_in ISO (PMID:19595721) RGD PMID:19595721 NCBI chr10:11,526,563...11,549,291
Ensembl chr10:11,528,424...11,549,295
JBrowse link
DNA endoreduplication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Zpr1 ZPR1 zinc finger involved_in ISO (MGI:3575865|PMID:15767679) RGD PMID:15767679 MGI:3575865 NCBI chr 8:46,564,898...46,574,719
Ensembl chr 8:46,565,146...46,574,719
JBrowse link
DNA hypermethylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnmt1 DNA methyltransferase 1 IMP RGD PMID:21682946 RGD:9588311 NCBI chr 8:19,440,611...19,486,659
Ensembl chr 8:19,440,611...19,486,659
JBrowse link
G Morc1 MORC family CW-type zinc finger 1 acts_upstream_of_or_within ISO MGI:1857787 (MGI:5694015|PMID:25503965) RGD PMID:25503965 MGI:5694015 NCBI chr11:52,178,769...52,384,255
Ensembl chr11:52,178,769...52,384,255
JBrowse link
DNA integration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Banf1 BAF nuclear assembly factor 1 acts_upstream_of_or_within ISO (MGI:1344934|PMID:9465049) RGD PMID:9465049 MGI:1344934 NCBI chr 1:202,672,170...202,674,215
Ensembl chr 1:202,671,305...202,674,188
JBrowse link
G Gin1 gypsy retrotransposon integrase 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 9:98,293,596...98,315,155
Ensembl chr 9:98,293,597...98,315,848
JBrowse link
G Nynrin NYN domain and retroviral integrase containing involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr15:29,332,873...29,355,215
Ensembl chr15:29,332,869...29,355,215
JBrowse link
G Setmar SET domain and mariner transposase fusion gene involved_in ISO (PMID:16332963), (PMID:24573677) RGD PMID:16332963 PMID:24573677 NCBI chr 4:141,046,058...141,058,183
Ensembl chr 4:141,046,069...141,058,197
JBrowse link
DNA ligation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aptx aprataxin acts_upstream_of_or_within ISO (MGI:3665365|PMID:16964241) RGD PMID:16964241 MGI:3665365 NCBI chr 5:55,798,896...55,822,963
Ensembl chr 5:55,800,248...55,822,855
JBrowse link
G Lig1 DNA ligase 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:74,165,688...74,204,400
Ensembl chr 1:74,165,842...74,204,413
JBrowse link
G Lig3 DNA ligase 3 involved_in IBA
ISO
PMID:21873635
(PMID:7565692)
RGD PMID:7565692 PMID:21873635 RGD:13792537 NCBI chr10:67,717,796...67,741,141
Ensembl chr10:67,717,812...67,798,414
JBrowse link
G Lig4 DNA ligase 4 acts_upstream_of_or_within
involved_in
IDA
ISO
MGI:1857732 (MGI:3052572|PMID:15194694), (MGI:3615734|PMID:15968270)
(PMID:12517771)
RGD PMID:12517771 PMID:15194694 PMID:15968270 PMID:9600082 MGI:3052572 MGI:3615734, RGD:1601271 NCBI chr16:79,518,393...79,526,956
Ensembl chr16:79,518,312...79,527,040
JBrowse link
G Top2a DNA topoisomerase II alpha involved_in ISO
IEA
(PMID:15491148)
GO_REF:0000107
RGD
Ensembl
PMID:15491148 GO_REF:0000107 NCBI chr10:83,946,186...83,975,694
Ensembl chr10:83,945,735...83,976,874
JBrowse link
G Xrcc4 X-ray repair cross complementing 4 acts_upstream_of_or_within ISO (MGI:3052572|PMID:15194694) RGD PMID:15194694 MGI:3052572 NCBI chr 2:20,948,464...21,197,705
Ensembl chr 2:20,951,200...21,197,808
JBrowse link
DNA ligation involved in DNA recombination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lig4 DNA ligase 4 acts_upstream_of_or_within ISO MGI:1857732 (MGI:1312981|PMID:9823897) RGD PMID:9823897 MGI:1312981 NCBI chr16:79,518,393...79,526,956
Ensembl chr16:79,518,312...79,527,040
JBrowse link
DNA ligation involved in DNA repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lig4 DNA ligase 4 acts_upstream_of_or_within
involved_in
ISO MGI:1857732 (MGI:1312981|PMID:9823897)
(PMID:12517771), (PMID:17290226)
RGD PMID:9823897 PMID:12517771 PMID:17290226 MGI:1312981 NCBI chr16:79,518,393...79,526,956
Ensembl chr16:79,518,312...79,527,040
JBrowse link
G Nhej1 nonhomologous end-joining factor 1 involved_in ISO (PMID:19056826) RGD PMID:19056826 NCBI chr 9:76,526,322...76,622,488
Ensembl chr 9:76,526,324...76,622,444
JBrowse link
G Pnkp polynucleotide kinase 3'-phosphatase involved_in ISO (PMID:15385968) RGD PMID:15385968 NCBI chr 1:95,341,465...95,346,921
Ensembl chr 1:95,341,620...95,346,920
JBrowse link
G Xrcc4 X-ray repair cross complementing 4 involved_in IBA
ISO
PMID:21873635
(PMID:12517771), (PMID:15385968), (PMID:17290226), (PMID:28453785)
RGD PMID:12517771 PMID:15385968 PMID:17290226 PMID:28453785 PMID:21873635 RGD:13792537 NCBI chr 2:20,948,464...21,197,705
Ensembl chr 2:20,951,200...21,197,808
JBrowse link
DNA methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atf7ip activating transcription factor 7 interacting protein involved_in ISO (PMID:12665582) RGD PMID:12665582 NCBI chr 4:169,385,872...169,471,652
Ensembl chr 4:169,385,872...169,471,650
JBrowse link
G Baz2a bromodomain adjacent to zinc finger domain, 2A involved_in ISO (MGI:3587127|PMID:16085498), (MGI:3852588|PMID:19578370) RGD PMID:16085498 PMID:19578370 MGI:3587127 MGI:3852588 NCBI chr 7:523,204...560,911
Ensembl chr 7:523,265...560,659
JBrowse link
G Bend3 BEN domain containing 3 involved_in ISO (PMID:26100909) RGD PMID:26100909 NCBI chr20:46,980,246...47,017,059
Ensembl chr20:46,979,831...47,014,671
JBrowse link
G Bmi1 BMI1 proto-oncogene, polycomb ring finger acts_upstream_of_or_within ISO (MGI:5522578|PMID:24105743) RGD PMID:24105743 MGI:5522578 NCBI chr17:81,332,175...81,341,625
Ensembl chr17:81,332,214...81,388,690
JBrowse link
G Ctcf CCCTC-binding factor acts_upstream_of_or_within ISO (MGI:2450195|PMID:12461525), (MGI:5522578|PMID:24105743) RGD PMID:12461525 PMID:24105743 MGI:2450195 MGI:5522578 NCBI chr19:33,521,726...33,571,124
Ensembl chr19:33,529,319...33,571,123
JBrowse link
G Cyp1a1 cytochrome P450, family 1, subfamily a, polypeptide 1 IEP RGD PMID:29115507 RGD:25823175 NCBI chr 8:58,096,021...58,102,130
Ensembl chr 8:58,096,077...58,102,125
JBrowse link
G Dnmt1 DNA methyltransferase 1 acts_upstream_of_or_within ISO MGI:1261819|MGI:1261827|MGI:1930971 (MGI:2152690|PMID:11399088), (MGI:3655888|PMID:16887828), (MGI:5522578|PMID:24105743), (MGI:5888829|PMID:27892467), (MGI:6151717|PMID:27841881) RGD PMID:11399088 PMID:16887828 PMID:24105743 PMID:27841881 PMID:27892467 MGI:2152690 MGI:3655888 MGI:5522578 MGI:5888829 MGI:6151717 NCBI chr 8:19,440,611...19,486,659
Ensembl chr 8:19,440,611...19,486,659
JBrowse link
G Dnmt3a DNA methyltransferase 3 alpha involved_in
acts_upstream_of_or_within
ISO
ISS
(PMID:12138111), (PMID:19786833), (PMID:23042785), (PMID:30478443)
MGI:1261819|MGI:94912 (MGI:2152692|PMID:11399089), (MGI:2178074|PMID:11934864), (MGI:3768461|PMID:17938196), (MGI:6151717|PMID:27841881)
RGD PMID:11399089 PMID:11934864 PMID:12138111 PMID:17938196 PMID:19786833 More... MGI:2152692 MGI:2178074 MGI:3768461 MGI:6151717, RGD:8554662 NCBI chr 6:26,791,517...26,902,161
Ensembl chr 6:26,822,609...26,896,687
JBrowse link
G Dnmt3b DNA methyltransferase 3 beta acts_upstream_of_or_within ISO MGI:1261827|MGI:1859287|MGI:3047833|MGI:94912 (MGI:3623538|PMID:16543361), (MGI:3768461|PMID:17938196), (MGI:5320860|PMID:22133874), (MGI:6151717|PMID:27841881) RGD PMID:16543361 PMID:17938196 PMID:22133874 PMID:27841881 MGI:3623538 MGI:3768461 MGI:5320860 MGI:6151717 NCBI chr 3:142,130,592...142,169,124
Ensembl chr 3:142,130,592...142,169,124
JBrowse link
G Dnmt3l DNA methyltransferase 3 like acts_upstream_of_or_within
involved_in
ISO
IEA
MGI:2155766 (MGI:5694015|PMID:25503965)
GO_REF:0000002
RGD
InterPro
PMID:25503965 GO_REF:0000002 MGI:5694015 NCBI chr20:10,614,933...10,629,516
Ensembl chr20:10,614,934...10,629,516
JBrowse link
G Ehmt1 euchromatic histone lysine methyltransferase 1 involved_in ISO
IBA
(MGI:3826717|PMID:18818694)
PMID:21873635
RGD PMID:18818694 PMID:21873635 MGI:3826717, RGD:13792537 NCBI chr 3:7,580,680...7,729,046
Ensembl chr 3:7,580,683...7,729,007
JBrowse link
G Ehmt2 euchromatic histone lysine methyltransferase 2 involved_in ISO
IBA
(MGI:3826717|PMID:18818694)
PMID:21873635
RGD PMID:18818694 PMID:21873635 MGI:3826717, RGD:13792537 NCBI chr20:3,919,623...3,936,751
Ensembl chr20:3,919,624...3,941,547
JBrowse link
G Eomes eomesodermin involved_in ISO (MGI:6220563|PMID:30186101) RGD PMID:30186101 MGI:6220563 NCBI chr 8:118,181,340...118,189,186
Ensembl chr 8:118,181,777...118,188,316
JBrowse link
G Ezh2 enhancer of zeste 2 polycomb repressive complex 2 subunit acts_upstream_of_or_within ISO (MGI:5522578|PMID:24105743) RGD PMID:24105743 MGI:5522578 NCBI chr 4:76,624,399...76,687,362
Ensembl chr 4:76,624,399...76,687,362
JBrowse link
G Gnas GNAS complex locus acts_upstream_of_or_within ISO MGI:4459474 (MGI:4454202|PMID:20427744) RGD PMID:20427744 MGI:4454202 NCBI chr 3:163,071,003...163,136,350
Ensembl chr 3:163,071,417...163,127,262
Ensembl chr 3:163,071,417...163,127,262
JBrowse link
G Hells helicase, lymphoid specific involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:2178586 (MGI:2153312|PMID:11711429)
RGD PMID:11711429 PMID:21873635 MGI:2153312, RGD:13792537 NCBI chr 1:236,701,704...236,748,239
Ensembl chr 1:236,701,758...236,746,844
JBrowse link
G Kmt2a lysine methyltransferase 2A acts_upstream_of_or_within ISO (MGI:3625774|PMID:16618927) RGD PMID:16618927 MGI:3625774 NCBI chr 8:45,116,771...45,193,320
Ensembl chr 8:45,118,814...45,193,181
JBrowse link
G Kmt2e lysine methyltransferase 2E involved_in ISO (MGI:3834766|PMID:18854576) RGD PMID:18854576 MGI:3834766 NCBI chr 4:11,657,811...11,727,373
Ensembl chr 4:11,658,979...11,727,373
JBrowse link
G Mta2 metastasis associated 1 family, member 2 acts_upstream_of_or_within ISO (MGI:4888087|PMID:20720167) RGD PMID:20720167 MGI:4888087 NCBI chr 1:205,838,181...205,846,903
Ensembl chr 1:205,837,964...205,846,946
JBrowse link
G Mtr 5-methyltetrahydrofolate-homocysteine methyltransferase involved_in IC PMID:20424322 BHF-UCL PMID:20424322 RGD:10054082 NCBI chr17:58,219,998...58,308,560
Ensembl chr17:58,220,071...58,304,822
JBrowse link
G Mtrr 5-methyltetrahydrofolate-homocysteine methyltransferase reductase involved_in ISS
ISO
GO_REF:0000024
(MGI:5512657|PMID:24074862)
UniProt
RGD
PMID:24074862 GO_REF:0000024 MGI:5512657 NCBI chr 1:34,866,991...34,899,425
Ensembl chr 1:34,867,089...34,899,425
JBrowse link
G Pax6 paired box 6 involved_in ISO
IEA
(MGI:6220563|PMID:30186101)
GO_REF:0000107
RGD
Ensembl
PMID:30186101 GO_REF:0000107 MGI:6220563 NCBI chr 3:92,128,772...92,157,022
Ensembl chr 3:92,135,637...92,157,014
JBrowse link
G Ppm1d protein phosphatase, Mg2+/Mn2+ dependent, 1D involved_in ISO (MGI:5551345|PMID:24135283) RGD PMID:24135283 MGI:5551345 NCBI chr10:70,172,603...70,208,607
Ensembl chr10:70,172,603...70,208,607
JBrowse link
G Spocd1 SPOC domain containing 1 involved_in ISO (MGI:6453929|PMID:32674113) RGD PMID:32674113 MGI:6453929 NCBI chr 5:142,288,822...142,297,113 JBrowse link
G Tex15 testis expressed 15, meiosis and synapsis associated involved_in ISO (MGI:6434559|PMID:32381626), (MGI:6447460|PMID:32719317) RGD PMID:32381626 PMID:32719317 MGI:6434559 MGI:6447460 NCBI chr16:58,598,991...58,659,005
Ensembl chr16:58,598,989...58,658,467
JBrowse link
DNA methylation involved in embryo development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnmt1 DNA methyltransferase 1 involved_in
acts_upstream_of_or_within
acts_upstream_of_or_within_positive_effect
IEA
ISO
GO_REF:0000107
MGI:1261819|MGI:1261827|MGI:1857157 (MGI:49689|PMID:1606615), (MGI:6151717|PMID:27841881)
MGI:3613486|MGI:5566775 (MGI:6270117|PMID:29117290)
Ensembl
RGD
PMID:1606615 PMID:27841881 PMID:29117290 GO_REF:0000107 MGI:49689 MGI:6151717 MGI:6270117 NCBI chr 8:19,440,611...19,486,659
Ensembl chr 8:19,440,611...19,486,659
JBrowse link
G Dnmt3a DNA methyltransferase 3 alpha involved_in
acts_upstream_of_or_within
ISO (MGI:3045942|PMID:15215868)
MGI:1261819|MGI:94912 (MGI:1347183|PMID:10555141), (MGI:5014027|PMID:20385583), (MGI:6151717|PMID:27841881)
RGD PMID:10555141 PMID:15215868 PMID:20385583 PMID:27841881 MGI:1347183 MGI:3045942 MGI:5014027 MGI:6151717 NCBI chr 6:26,791,517...26,902,161
Ensembl chr 6:26,822,609...26,896,687
JBrowse link
G Dnmt3b DNA methyltransferase 3 beta acts_upstream_of_or_within ISO MGI:1261827|MGI:94912 (MGI:1347183|PMID:10555141), (MGI:6151717|PMID:27841881), (PMID:18814855) RGD PMID:10555141 PMID:18814855 PMID:27841881 MGI:1347183 MGI:6151717 NCBI chr 3:142,130,592...142,169,124
Ensembl chr 3:142,130,592...142,169,124
JBrowse link
G Trim28 tripartite motif-containing 28 acts_upstream_of_or_within ISO MGI:1928907 (MGI:5319411|PMID:22495301) RGD PMID:22495301 MGI:5319411 NCBI chr 1:73,652,441...73,659,388
Ensembl chr 1:73,652,709...73,659,380
JBrowse link
G Zdbf2 zinc finger, DBF-type containing 2 acts_upstream_of_or_within
involved_in
ISO
IBA
MGI:6161219 (MGI:6151717|PMID:27841881)
PMID:21873635
RGD PMID:27841881 PMID:21873635 MGI:6151717, RGD:13792537 NCBI chr 9:64,672,974...64,748,446
Ensembl chr 9:64,709,880...64,744,265
JBrowse link
G Zfp57 zinc finger protein 57 involved_in
acts_upstream_of_or_within
ISO
ISS
(PMID:18622393)
MGI:3826984 (MGI:6506156|PMID:33500348)
(MGI:3826319|PMID:18854139)
GO_REF:0000024
RGD
UniProt
PMID:18622393 PMID:18854139 PMID:33500348 GO_REF:0000024 MGI:3826319 MGI:6506156 NCBI chr20:1,521,323...1,534,884
Ensembl chr20:1,521,323...1,529,846
JBrowse link
DNA methylation involved in gamete generation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Asz1 ankyrin repeat, SAM and basic leucine zipper domain containing 1 involved_in ISO (MGI:4356194|PMID:19730684) RGD PMID:19730684 MGI:4356194 NCBI chr 4:46,400,485...46,456,085
Ensembl chr 4:46,400,485...46,456,085
JBrowse link
G Ctcfl CCCTC-binding factor like involved_in ISO (MGI:3692841|PMID:17048991) RGD PMID:17048991 MGI:3692841 NCBI chr 3:161,868,306...161,890,949
Ensembl chr 3:161,868,306...161,890,949
JBrowse link
G Ddx4 DEAD-box helicase 4 involved_in ISS
ISO
GO_REF:0000024
(MGI:4443217|PMID:20439430)
UniProt
RGD
PMID:20439430 GO_REF:0000024 MGI:4443217 NCBI chr 2:44,227,946...44,282,867
Ensembl chr 2:44,227,946...44,282,723
JBrowse link
G Dnmt3a DNA methyltransferase 3 alpha involved_in ISO (MGI:3045942|PMID:15215868) RGD PMID:15215868 MGI:3045942 NCBI chr 6:26,791,517...26,902,161
Ensembl chr 6:26,822,609...26,896,687
JBrowse link
G Dnmt3l DNA methyltransferase 3 like involved_in ISS
ISO
GO_REF:0000024
(MGI:3054275|PMID:15318244)
UniProt
RGD
PMID:15318244 GO_REF:0000024 MGI:3054275 NCBI chr20:10,614,933...10,629,516
Ensembl chr20:10,614,934...10,629,516
JBrowse link
G Fkbp6 FKBP prolyl isomerase family member 6 involved_in ISS
ISO
GO_REF:0000024
(MGI:5439219|PMID:22902560)
UniProt
RGD
PMID:22902560 GO_REF:0000024 MGI:5439219 NCBI chr12:21,318,251...21,390,350
Ensembl chr12:21,319,568...21,390,350
JBrowse link
G Kdm1b lysine demethylase 1B acts_upstream_of_or_within ISO MGI:4359289 (MGI:4358629|PMID:19727073) RGD PMID:19727073 MGI:4358629 NCBI chr17:17,602,961...17,643,865
Ensembl chr17:17,602,961...17,643,800
JBrowse link
G Mael maelstrom spermatogenic transposon silencer involved_in ISO (MGI:4417983|PMID:20011505) RGD PMID:20011505 MGI:4417983 NCBI chr13:78,457,073...78,496,657
Ensembl chr13:78,457,073...78,496,657
JBrowse link
G Morc1 MORC family CW-type zinc finger 1 acts_upstream_of_or_within ISO MGI:1857787 (MGI:5694015|PMID:25503965) RGD PMID:25503965 MGI:5694015 NCBI chr11:52,178,769...52,384,255
Ensembl chr11:52,178,769...52,384,255
JBrowse link
G Mov10l1 Mov10 like RISC complex RNA helicase 1 involved_in ISO (MGI:4457283|PMID:20534472) RGD PMID:20534472 MGI:4457283 NCBI chr 7:120,070,171...120,135,406
Ensembl chr 7:120,070,135...120,134,765
JBrowse link
G Piwil2 piwi-like RNA-mediated gene silencing 2 involved_in ISO (MGI:3778312|PMID:18381894), (MGI:3815367|PMID:18922463) RGD PMID:18381894 PMID:18922463 MGI:3778312 MGI:3815367 NCBI chr15:45,431,402...45,498,034
Ensembl chr15:45,431,703...45,497,702
JBrowse link
G Piwil4 piwi-like RNA-mediated gene silencing 4 involved_in ISS
ISO
GO_REF:0000024
(MGI:3778312|PMID:18381894), (MGI:3815367|PMID:18922463)
UniProt
RGD
PMID:18381894 PMID:18922463 GO_REF:0000024 MGI:3778312 MGI:3815367 NCBI chr 8:11,536,520...11,579,883
Ensembl chr 8:11,536,520...11,579,761
JBrowse link
G Pld6 phospholipase D family, member 6 involved_in ISO (MGI:4943610|PMID:21397847) RGD PMID:21397847 MGI:4943610 NCBI chr10:44,577,740...44,581,686
Ensembl chr10:44,577,675...44,581,077
JBrowse link
G Prmt7 protein arginine methyltransferase 7 involved_in ISS
ISO
GO_REF:0000024
(MGI:3692841|PMID:17048991)
UniProt
RGD
PMID:17048991 GO_REF:0000024 MGI:3692841 NCBI chr19:34,110,724...34,161,531
Ensembl chr19:34,110,747...34,162,577
JBrowse link
G Tdrd1 tudor domain containing 1 involved_in ISO (MGI:4356231|PMID:19465913) RGD PMID:19465913 MGI:4356231 NCBI chr 1:255,871,939...255,919,222
Ensembl chr 1:255,875,887...255,915,871
JBrowse link
G Tdrd12 tudor domain containing 12 involved_in ISO (MGI:5516419|PMID:24067652) RGD PMID:24067652 MGI:5516419 NCBI chr 1:88,133,271...88,205,729
Ensembl chr 1:88,133,373...88,205,705
JBrowse link
G Tdrd5 tudor domain containing 5 involved_in ISS
ISO
IEA
GO_REF:0000024
(MGI:4946318|PMID:21383078)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:21383078 GO_REF:0000024 GO_REF:0000107 MGI:4946318 NCBI chr13:68,394,180...68,447,745
Ensembl chr13:68,394,061...68,441,319
JBrowse link
G Tdrd9 tudor domain containing 9 involved_in ISS
ISO
GO_REF:0000024
(MGI:4418580|PMID:20059948)
UniProt
RGD
PMID:20059948 GO_REF:0000024 MGI:4418580 NCBI chr 6:131,029,644...131,145,076
Ensembl chr 6:131,029,652...131,144,651
JBrowse link
G Tdrkh tudor and KH domain containing involved_in ISO (MGI:5494327|PMID:23714778) RGD PMID:23714778 MGI:5494327 NCBI chr 2:182,049,175...182,071,516
Ensembl chr 2:182,049,215...182,070,755
JBrowse link
DNA methylation on adenine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mettl4 methyltransferase like 4 involved_in ISO
IBA
(PMID:32183942)
PMID:21873635
(MGI:6323482|PMID:30982744)
RGD PMID:30982744 PMID:32183942 PMID:21873635 MGI:6323482, RGD:13792537 NCBI chr 9:111,440,976...111,523,871
Ensembl chr 9:111,441,027...111,464,749
JBrowse link
G N6amt1 N-6 adenine-specific DNA methyltransferase 1 involved_in
NOT|involved_in
ISO (PMID:30017583)
(PMID:30392959), (PMID:31632689), (PMID:31636962)
RGD PMID:30017583 PMID:30392959 PMID:31632689 PMID:31636962 NCBI chr11:26,584,750...26,597,790
Ensembl chr11:26,584,724...26,608,248
JBrowse link
DNA methylation on cytosine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnmt1 DNA methyltransferase 1 acts_upstream_of_or_within IDA
ISO
MGI:1857157 (MGI:49689|PMID:1606615) RGD PMID:1606615 PMID:22880885 MGI:49689, RGD:9588218 NCBI chr 8:19,440,611...19,486,659
Ensembl chr 8:19,440,611...19,486,659
JBrowse link
G Dnmt3a DNA methyltransferase 3 alpha involved_in IDA
IBA
PMID:21873635 RGD
GO_Central
PMID:22880885 PMID:21873635 RGD:9588218, RGD:13792537 NCBI chr 6:26,791,517...26,902,161
Ensembl chr 6:26,822,609...26,896,687
JBrowse link
G Dnmt3l DNA methyltransferase 3 like involved_in ISS
IBA
ISO
GO_REF:0000024
PMID:21873635
(MGI:3054275|PMID:15318244)
UniProt
RGD
PMID:15318244 PMID:21873635 GO_REF:0000024 MGI:3054275, RGD:13792537 NCBI chr20:10,614,933...10,629,516
Ensembl chr20:10,614,934...10,629,516
JBrowse link
DNA methylation on cytosine within a CG sequence term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnmt1 DNA methyltransferase 1 IDA RGD PMID:3856245 RGD:2301219 NCBI chr 8:19,440,611...19,486,659
Ensembl chr 8:19,440,611...19,486,659
JBrowse link
G Ehmt2 euchromatic histone lysine methyltransferase 2 acts_upstream_of_or_within ISO (MGI:3718157|PMID:17212651) RGD PMID:17212651 MGI:3718157 NCBI chr20:3,919,623...3,936,751
Ensembl chr20:3,919,624...3,941,547
JBrowse link
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 acts_upstream_of_or_within ISO MGI:3611933 (MGI:3610843|PMID:16287714) RGD PMID:16287714 MGI:3610843 NCBI chr 8:20,167,717...20,258,975
Ensembl chr 8:20,167,717...20,258,975
JBrowse link
DNA modification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cyp1b1 cytochrome P450, family 1, subfamily b, polypeptide 1 IMP positive regulation of DNA adduct formation RGD PMID:24025706 RGD:7829724 NCBI chr 6:15,342,312...15,350,886
Ensembl chr 6:15,342,344...15,350,917
JBrowse link
G Dntt DNA nucleotidylexotransferase involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:239,856,391...239,888,283
Ensembl chr 1:239,856,391...239,888,282
JBrowse link
G Gstt1 glutathione S-transferase theta 1 IDA RGD PMID:11453994 RGD:7794854 NCBI chr20:12,856,613...12,873,586
Ensembl chr20:12,856,669...12,873,585
JBrowse link
G Trex1 three prime repair exonuclease 1 acts_upstream_of_or_within ISO MGI:3052754 (MGI:5566725|PMID:24205360) RGD PMID:24205360 MGI:5566725 NCBI chr 8:109,706,613...109,707,913
Ensembl chr 8:109,706,613...109,708,796
JBrowse link
DNA protection term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cbs cystathionine beta synthase involved_in ISO (PMID:24534463) RGD PMID:24534463 NCBI chr20:9,708,089...9,732,623
Ensembl chr20:9,708,090...9,732,764
JBrowse link
G Dctpp1 dCTP pyrophosphatase 1 involved_in ISO
IBA
ISS
(PMID:24467396)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:24467396 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 1:181,877,440...181,880,833
Ensembl chr 1:181,877,437...181,880,839
JBrowse link
G Ercc6 ERCC excision repair 6, chromatin remodeling factor IMP RGD PMID:31644904 RGD:126925983 NCBI chr16:7,764,983...7,835,587
Ensembl chr16:7,765,013...7,835,587
JBrowse link
G Nudt1 nudix hydrolase 1 involved_in ISO
IBA
ISS
(PMID:10608900)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:10608900 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr12:14,302,514...14,309,559
Ensembl chr12:14,302,694...14,305,826
JBrowse link
G Nudt15 nudix hydrolase 15 NOT|involved_in ISO (PMID:26238318)
(PMID:26878724)
RGD PMID:26238318 PMID:26878724 NCBI chr15:48,707,776...48,747,363
Ensembl chr15:48,709,700...48,747,363
JBrowse link
DNA recombinase assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dmc1 DNA meiotic recombinase 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:111,124,888...111,167,465
Ensembl chr 7:111,124,888...111,167,952
JBrowse link
G Rad51 RAD51 recombinase involved_in ISO
IBA
(PMID:26681308)
PMID:21873635
RGD PMID:26681308 PMID:21873635 RGD:13792537 NCBI chr 3:106,099,753...106,125,038
Ensembl chr 3:106,100,381...106,125,035
JBrowse link
G Rad52 RAD52 homolog, DNA repair protein involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 4:153,106,062...153,128,598
Ensembl chr 4:153,106,062...153,128,207
JBrowse link
DNA recombination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AC108595.1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 Ensembl chr 7:122,951,378...122,953,062 JBrowse link
G Actr8 actin related protein 8 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr16:5,164,131...5,186,353
Ensembl chr16:5,164,129...5,178,577
JBrowse link
G Apex1 apurinic/apyrimidinic endodeoxyribonuclease 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr15:24,144,595...24,146,785
Ensembl chr15:24,144,362...24,146,785
JBrowse link
G Apex2 apurinic/apyrimidinic endodeoxyribonuclease 2 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr  X:19,425,684...19,508,459
Ensembl chr  X:19,487,419...19,508,439
JBrowse link
G Blm BLM RecQ like helicase involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:134,409,832...134,496,073
Ensembl chr 1:134,409,857...134,484,312
JBrowse link
G Brca2 BRCA2, DNA repair associated IDA RGD PMID:12228710 RGD:632363 NCBI chr12:59,492...103,789
Ensembl chr12:59,819...100,567
JBrowse link
G Dclre1c DNA cross-link repair 1C acts_upstream_of_or_within ISO MGI:2667614 (MGI:2447929|PMID:12504013) RGD PMID:12504013 MGI:2447929 NCBI chr17:74,775,828...74,810,089
Ensembl chr17:74,776,935...74,809,186
JBrowse link
G Eid3 EP300 interacting inhibitor of differentiation 3 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 7:20,860,073...20,861,395 JBrowse link
G Ercc1 ERCC excision repair 1, endonuclease non-catalytic subunit acts_upstream_of_or_within ISO MGI:2183944 (MGI:2153690|PMID:11707424)
UniProtKB:P07903 (PMID:11707424)
RGD PMID:11707424 MGI:2153690 NCBI chr 1:78,971,310...79,007,963
Ensembl chr 1:78,996,390...79,007,963
JBrowse link
G Exo1 exonuclease 1 involved_in ISO
IBA
UniProtKB:P39875 (PMID:10364235)
PMID:21873635
RGD PMID:10364235 PMID:21873635 RGD:13792537 NCBI chr13:87,809,725...87,834,654
Ensembl chr13:87,809,810...87,834,654
JBrowse link
G Hdgfl2 HDGF like 2 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 9:909,581...929,195
Ensembl chr 9:909,614...929,186
JBrowse link
G Hmgb1 high mobility group box 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr12:5,973,062...5,978,565
Ensembl chr12:5,901,586...5,978,565
JBrowse link
G Hmgb1l1 high mobility group box 1-like 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr19:55,045,885...55,047,145
Ensembl chr19:55,045,869...55,047,145
JBrowse link
G Hmgb2 high mobility group box 2 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr16:32,710,651...32,713,230
Ensembl chr16:32,710,658...32,713,140
JBrowse link
G Hmgb2l1 high mobility group box 2-like 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr11:47,252,583...47,253,646
Ensembl chr11:47,252,569...47,253,669
JBrowse link
G Iho1 interactor of HORMAD1 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 8:109,091,134...109,126,386
Ensembl chr 8:109,092,758...109,125,434
JBrowse link
G Ino80c INO80 complex subunit C involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr18:15,378,764...15,398,574
Ensembl chr18:15,378,770...15,393,403
JBrowse link
G Ino80e INO80 complex subunit E involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:181,461,406...181,472,059
Ensembl chr 1:181,461,408...181,472,469
JBrowse link
G Lig1 DNA ligase 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:74,165,688...74,204,400
Ensembl chr 1:74,165,842...74,204,413
JBrowse link
G LOC108350839 high mobility group protein B1-like involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 4:91,306,902...91,309,095 JBrowse link
G LOC690117 similar to High mobility group protein 1 (HMG-1) (High mobility group protein B1) (Amphoterin) (Heparin-binding protein p30) involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr16:34,028,487...34,030,715
Ensembl chr16:34,028,446...34,030,648
JBrowse link
G Mei4 meiotic double-stranded break formation protein 4 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 8:82,765,661...82,939,649
Ensembl chr 8:82,765,661...82,939,649
JBrowse link
G Nono non-POU domain containing, octamer-binding involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr  X:66,554,131...66,571,992
Ensembl chr  X:66,554,098...66,571,952
JBrowse link
G Nsmce1 NSE1 homolog, SMC5-SMC6 complex component involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:180,030,355...180,058,541
Ensembl chr 1:180,030,160...180,058,417
JBrowse link
G Nsmce4a NSE4 homolog A, SMC5-SMC6 complex component involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 1:185,102,075...185,109,166
Ensembl chr 1:185,094,360...185,109,166
JBrowse link
G Pagr1 Paxip1-associated glutamate-rich protein 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:181,622,708...181,624,996 JBrowse link
G Pif1 PIF1 5'-to-3' DNA helicase involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 8:66,110,641...66,120,202
Ensembl chr 8:66,111,072...66,120,200
JBrowse link
G Rad50 RAD50 double strand break repair protein involved_in ISO
IEA
ISS
(PMID:9705271)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:9705271 GO_REF:0000024 GO_REF:0000107 NCBI chr10:37,809,353...37,861,309
Ensembl chr10:37,808,726...37,861,396
JBrowse link
G Rad51ap1 RAD51 associated protein 1 acts_upstream_of_or_within ISO PR:Q08297 (MGI:893977|PMID:9192668) RGD PMID:9192668 MGI:893977 NCBI chr 4:159,759,454...159,772,524
Ensembl chr 4:159,759,459...159,772,524
JBrowse link
G Rad51c RAD51 paralog C involved_in ISO (PMID:19451272) RGD PMID:19451272 NCBI chr10:72,205,032...72,231,643
Ensembl chr10:72,205,032...72,231,248
JBrowse link
G Rad52 RAD52 homolog, DNA repair protein involved_in ISO (PMID:12370410), (PMID:8702565) RGD PMID:8702565 PMID:12370410 NCBI chr 4:153,106,062...153,128,598
Ensembl chr 4:153,106,062...153,128,207
JBrowse link
G Recql RecQ like helicase involved_in IBA
IEA
PMID:21873635
GO_REF:0000002
InterPro PMID:21873635 GO_REF:0000002, RGD:13792537 NCBI chr 4:175,308,337...175,332,965
Ensembl chr 4:175,304,117...175,332,945
JBrowse link
G Recql4 RecQ like helicase 4 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:108,423,453...108,430,790
Ensembl chr 7:108,423,455...108,430,619
JBrowse link
G Recql5 RecQ like helicase 5 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:101,126,544...101,165,739
Ensembl chr10:101,126,547...101,165,652
JBrowse link
G RGD1563668 similar to High mobility group protein 1 (HMG-1) involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:39,768,658...39,769,408
Ensembl chr10:39,768,658...39,769,293
JBrowse link
G RGD1564855 similar to RuvB-like protein 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr  X:1,640,138...1,641,886
Ensembl chr  X:1,640,300...1,641,811
JBrowse link
G Rpain RPA interacting protein acts_upstream_of_or_within ISO UniProtKB:P27694 (PMID:16135809) RGD PMID:16135809 NCBI chr10:55,692,410...55,699,910
Ensembl chr10:55,692,417...55,699,933
JBrowse link
G Rtel1 regulator of telomere elongation helicase 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:168,427,247...168,465,349
Ensembl chr 3:168,419,579...168,465,348
JBrowse link
G Ruvbl1 RuvB-like AAA ATPase 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 4:120,932,486...120,967,400
Ensembl chr 4:120,932,417...121,029,384
JBrowse link
G Ruvbl2 RuvB-like AAA ATPase 2 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:95,902,014...95,915,364
Ensembl chr 1:95,901,701...95,915,342
JBrowse link
G Supv3l1 Suv3 like RNA helicase involved_in IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:17961633)
Ensembl
UniProt
RGD
PMID:17961633 GO_REF:0000024 GO_REF:0000107 NCBI chr20:30,378,542...30,399,076
Ensembl chr20:30,378,550...30,399,054
JBrowse link
G Tfpt TCF3 fusion partner involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:65,587,855...65,597,407
Ensembl chr 1:65,582,359...65,611,689
JBrowse link
G Wrn WRN RecQ like helicase involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:58,763,517...58,898,604
Ensembl chr16:58,763,504...58,895,450
JBrowse link
G Xrcc5 X-ray repair cross complementing 5 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 9:73,955,220...74,044,020
Ensembl chr 9:73,955,216...74,044,018
JBrowse link
DNA repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AC108595.1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 Ensembl chr 7:122,951,378...122,953,062 JBrowse link
G Adprs ADP-ribosylserine hydrolase involved_in ISO (PMID:30045870) RGD PMID:30045870 NCBI chr 5:138,614,022...138,619,296
Ensembl chr 5:138,614,022...138,619,296
JBrowse link
G Alkbh1 alkB homolog 1, histone H2A dioxygenase involved_in ISO (PMID:18603530), (PMID:19959401) RGD PMID:18603530 PMID:19959401 NCBI chr 6:107,068,309...107,088,779
Ensembl chr 6:107,068,475...107,088,759
JBrowse link
G Alkbh3 alkB homolog 3, alpha-ketoglutarate-dependent dioxygenase involved_in ISS
ISO
GO_REF:0000024
(PMID:16858410)
UniProt
RGD
PMID:16858410 GO_REF:0000024 NCBI chr 3:79,939,515...79,972,820
Ensembl chr 3:79,939,600...79,972,000
JBrowse link
G Ankle1 ankyrin repeat and LEM domain containing 1 NOT|involved_in ISO (MGI:5800654|PMID:27010503) RGD PMID:27010503 MGI:5800654 NCBI chr16:18,076,413...18,082,356
Ensembl chr16:18,076,492...18,083,729
JBrowse link
G Apex1 apurinic/apyrimidinic endodeoxyribonuclease 1 involved_in ISS
ISO
GO_REF:0000024
(PMID:1627644), (PMID:9560228)
UniProt
RGD
PMID:1627644 PMID:9560228 GO_REF:0000024 NCBI chr15:24,144,595...24,146,785
Ensembl chr15:24,144,362...24,146,785
JBrowse link
G Asf1a anti-silencing function 1A histone chaperone acts_upstream_of_or_within ISO (PMID:11897662) RGD PMID:11897662 NCBI chr20:32,893,962...32,908,808
Ensembl chr20:32,893,573...32,908,808
JBrowse link
G Atm ATM serine/threonine kinase acts_upstream_of_or_within ISO MGI:1857132|MGI:2155399 (MGI:2156121|PMID:11679583), (MGI:3053255|PMID:15364958), (MGI:3511081|PMID:15542845) RGD PMID:11679583 PMID:15364958 PMID:15542845 MGI:2156121 MGI:3053255 MGI:3511081 NCBI chr 8:53,828,741...53,932,773
Ensembl chr 8:53,831,093...53,932,437
JBrowse link
G Atr ATR serine/threonine kinase acts_upstream_of_or_within ISO (MGI:3053255|PMID:15364958) RGD PMID:15364958 MGI:3053255 NCBI chr 8:96,426,704...96,524,152
Ensembl chr 8:96,426,724...96,524,136
JBrowse link
G Atrip ATR interacting protein involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:109,708,440...109,722,511
Ensembl chr 8:109,708,440...109,722,477
JBrowse link
G Atrx ATRX, chromatin remodeler involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr  X:70,850,981...70,997,330
Ensembl chr  X:70,850,981...70,997,330
JBrowse link
G Bach1 BTB domain and CNC homolog 1 involved_in ISO (PMID:11301010) RGD PMID:11301010 NCBI chr11:26,939,429...26,974,876
Ensembl chr11:26,939,480...26,972,447
JBrowse link
G Bard1 BRCA1 associated RING domain 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 9:72,616,070...72,694,553
Ensembl chr 9:72,623,155...72,694,265
JBrowse link
G Blm BLM RecQ like helicase involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
(MGI:3053255|PMID:15364958)
RGD PMID:15364958 PMID:21873635 MGI:3053255, RGD:13792537 NCBI chr 1:134,409,832...134,496,073
Ensembl chr 1:134,409,857...134,484,312
JBrowse link
G Cdc5l cell division cycle 5-like involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 9:15,564,949...15,603,453
Ensembl chr 9:15,564,767...15,603,450
JBrowse link
G Cdk2 cyclin dependent kinase 2 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 7:1,129,878...1,137,431
Ensembl chr 7:1,129,811...1,137,403
JBrowse link
G Cdk7 cyclin-dependent kinase 7 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 2:31,840,545...31,865,447
Ensembl chr 2:31,840,558...31,865,383
JBrowse link
G Cdk9 cyclin-dependent kinase 9 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 3:15,996,467...16,001,315
Ensembl chr 3:15,996,468...16,002,410
JBrowse link
G Cenps centromere protein S involved_in ISO (PMID:20347429) RGD PMID:20347429 NCBI chr 5:159,563,917...159,573,534 JBrowse link
G Chaf1a chromatin assembly factor 1 subunit A involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 9:873,953...900,701
Ensembl chr 9:874,051...900,654
JBrowse link
G Chd1l chromodomain helicase DNA binding protein 1-like involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 2:185,138,526...185,217,498
Ensembl chr 2:185,139,308...185,217,595
JBrowse link
G Chek1 checkpoint kinase 1 involved_in
acts_upstream_of_or_within
ISO (PMID:19716789)
(MGI:3053255|PMID:15364958)
RGD PMID:15364958 PMID:19716789 MGI:3053255 NCBI chr 8:36,420,565...36,443,477
Ensembl chr 8:36,420,569...36,441,009
JBrowse link
G Chrna4 cholinergic receptor nicotinic alpha 4 subunit involved_in IEA
ISO
GO_REF:0000107
(PMID:16332175)
Ensembl
RGD
PMID:16332175 GO_REF:0000107 NCBI chr 3:168,136,246...168,157,839
Ensembl chr 3:168,136,266...168,156,957
JBrowse link
G Ddb1 damage-specific DNA binding protein 1 involved_in TAS
IBA
PMID:21873635 RGD
GO_Central
PMID:12145536 PMID:21873635 RGD:632554, RGD:13792537 NCBI chr 1:207,252,890...207,278,685
Ensembl chr 1:207,252,890...207,278,676
JBrowse link
G Ddb2 damage specific DNA binding protein 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:77,185,114...77,207,650
Ensembl chr 3:77,185,109...77,207,631
JBrowse link
G Dmap1 DNA methyltransferase 1-associated protein 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 5:131,143,726...131,151,760
Ensembl chr 5:131,143,729...131,151,742
JBrowse link
G Dot1l DOT1 like histone lysine methyltransferase involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:8,917,786...8,959,474
Ensembl chr 7:8,917,786...8,956,475
JBrowse link
G Eepd1 endonuclease/exonuclease/phosphatase family domain containing 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 8:23,957,258...24,064,343
Ensembl chr 8:23,957,255...24,064,340
JBrowse link
G Eid3 EP300 interacting inhibitor of differentiation 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:20,860,073...20,861,395 JBrowse link
G Endov endonuclease V involved_in ISO (MGI:5009179|PMID:12853604) RGD PMID:12853604 MGI:5009179 NCBI chr10:104,760,059...104,777,732
Ensembl chr10:104,760,137...104,775,969
JBrowse link
G Ep400 E1A binding protein p400 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:45,891,886...46,002,523
Ensembl chr12:45,891,916...45,998,861
JBrowse link
G Ercc1 ERCC excision repair 1, endonuclease non-catalytic subunit acts_upstream_of_or_within ISO MGI:2158940 (MGI:2446381|PMID:12466203)
(PMID:25538220)
RGD PMID:12466203 PMID:25538220 MGI:2446381 NCBI chr 1:78,971,310...79,007,963
Ensembl chr 1:78,996,390...79,007,963
JBrowse link
G Ercc2 ERCC excision repair 2, TFIIH core complex helicase subunit acts_upstream_of_or_within ISO MGI:2183949 (MGI:2179786|PMID:11950998) RGD PMID:11950998 MGI:2179786 NCBI chr 1:79,033,342...79,047,102
Ensembl chr 1:79,033,326...79,047,102
JBrowse link
G Ercc3 ERCC excision repair 3, TFIIH core complex helicase subunit involved_in ISO (PMID:2167179) RGD PMID:2167179 NCBI chr18:23,883,613...23,914,326
Ensembl chr18:23,883,580...23,914,329
JBrowse link
G Ercc4 ERCC excision repair 4, endonuclease catalytic subunit involved_in
acts_upstream_of_or_within
ISO UniProtKB:Q15554 (PMID:17055345), (PMID:19596235)
MGI:3028660 (MGI:3027419|PMID:14729965)
RGD PMID:14729965 PMID:17055345 PMID:19596235 MGI:3027419 NCBI chr10:2,416,259...2,448,364
Ensembl chr10:2,419,038...2,448,369
JBrowse link
G Ercc5 ERCC excision repair 5, endonuclease acts_upstream_of_or_within ISO MGI:3043589 (MGI:3041918|PMID:15082767) RGD PMID:15082767 MGI:3041918 NCBI chr 9:46,309,477...46,354,478
Ensembl chr 9:46,309,389...46,354,472
JBrowse link
G Ercc6 ERCC excision repair 6, chromatin remodeling factor involved_in
acts_upstream_of_or_within
ISO (PMID:26218421)
MGI:1097693|MGI:1932102 (MGI:1861042|PMID:10806208), (MGI:3715683|PMID:17213818), (MGI:3759387|PMID:12447686)
RGD PMID:10806208 PMID:12447686 PMID:17213818 PMID:26218421 MGI:1861042 MGI:3715683 MGI:3759387 NCBI chr16:7,764,983...7,835,587
Ensembl chr16:7,765,013...7,835,587
JBrowse link
G Eya2 EYA transcriptional coactivator and phosphatase 2 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 3:154,335,558...154,519,006
Ensembl chr 3:154,335,400...154,518,793
JBrowse link
G Eya4 EYA transcriptional coactivator and phosphatase 4 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:22,172,275...22,415,978
Ensembl chr 1:22,172,275...22,415,976
JBrowse link
G Fan1 FANCD2 and FANCI associated nuclease 1 involved_in ISO (PMID:20603073) RGD PMID:20603073 NCBI chr 1:117,915,323...117,945,044
Ensembl chr 1:117,917,099...117,944,977
JBrowse link
G Fancd2 FA complementation group D2 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 4:146,679,014...146,743,422
Ensembl chr 4:146,679,179...146,743,412
JBrowse link
G Fanci FA complementation group I involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 1:133,327,264...133,383,661
Ensembl chr 1:133,327,297...133,383,640
JBrowse link
G Fancl FA complementation group L involved_in IBA
ISO
PMID:21873635
(PMID:16916645)
RGD PMID:16916645 PMID:21873635 RGD:13792537 NCBI chr14:100,249,733...100,317,958
Ensembl chr14:100,248,875...100,314,255
JBrowse link
G Fbxo6 F-box protein 6 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 5:158,576,729...158,582,520
Ensembl chr 5:158,576,759...158,582,525
JBrowse link
G Fbxw7 F-box and WD repeat domain containing 7 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 2:170,150,552...170,310,698
Ensembl chr 2:170,149,694...170,309,941
JBrowse link
G Fen1 flap structure-specific endonuclease 1 acts_upstream_of_or_within ISO MGI:2670036 (MGI:2668283|PMID:12861020) RGD PMID:12861020 MGI:2668283 NCBI chr 1:206,845,126...206,849,821
Ensembl chr 1:206,844,884...206,850,003
JBrowse link
G Fh fumarate hydratase involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr13:87,524,331...87,550,215
Ensembl chr13:87,524,337...87,550,266
JBrowse link
G Fmr1 fragile X messenger ribonucleoprotein 1 involved_in ISS
ISO
GO_REF:0000024
(MGI:5602914|PMID:24813610)
(PMID:24813610)
UniProt
RGD
PMID:24813610 GO_REF:0000024 MGI:5602914 NCBI chr  X:147,240,239...147,278,057
Ensembl chr  X:147,240,301...147,278,050
JBrowse link
G Foxm1 forkhead box M1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 4:161,639,561...161,652,012
Ensembl chr 4:161,638,816...161,650,684
JBrowse link
G Gtf2h1 general transcription factor IIH subunit 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:97,321,401...97,349,455
Ensembl chr 1:97,321,394...97,349,455
JBrowse link
G H2ax H2A.X variant histone acts_upstream_of_or_within ISO MGI:2156048 (MGI:2179182|PMID:11934988), (MGI:3053255|PMID:15364958) RGD PMID:11934988 PMID:15364958 MGI:2179182 MGI:3053255 NCBI chr 8:44,671,927...44,673,257
Ensembl chr 8:44,671,786...44,673,239
JBrowse link
G Hdac10 histone deacetylase 10 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 7:120,199,126...120,205,850
Ensembl chr 7:120,199,129...120,204,228
JBrowse link
G Hdac9 histone deacetylase 9 acts_upstream_of_or_within ISO MGI:1890508 (MGI:5139938|PMID:21746928) RGD PMID:21746928 MGI:5139938 NCBI chr 6:50,762,074...51,624,311
Ensembl chr 6:50,763,590...51,625,333
JBrowse link
G Hdgfl2 HDGF like 2 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 9:909,581...929,195
Ensembl chr 9:909,614...929,186
JBrowse link
G Hinfp histone H4 transcription factor involved_in ISO (PMID:17974976) RGD PMID:17974976 NCBI chr 8:44,634,333...44,644,288
Ensembl chr 8:44,634,333...44,641,000
JBrowse link
G Hltf helicase-like transcription factor involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:102,549,724...102,609,492
Ensembl chr 2:102,549,724...102,609,327
JBrowse link
G Hmgb1 high mobility group box 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr12:5,973,062...5,978,565
Ensembl chr12:5,901,586...5,978,565
JBrowse link
G Hmgb1l1 high mobility group box 1-like 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr19:55,045,885...55,047,145
Ensembl chr19:55,045,869...55,047,145
JBrowse link
G Hspa1a heat shock protein family A (Hsp70) member 1A acts_upstream_of_or_within ISO MGI:3028843 (MGI:3027215|PMID:14701760) RGD PMID:14701760 MGI:3027215
G Huwe1 HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr  X:20,871,278...21,001,378
Ensembl chr  X:20,873,795...21,001,262
JBrowse link
G Inip INTS3 and NABP interacting protein involved_in IBA
ISO
PMID:21873635
(PMID:19605351)
RGD PMID:19605351 PMID:21873635 RGD:13792537 NCBI chr 5:74,648,392...74,662,628
Ensembl chr 5:74,648,392...74,662,628
JBrowse link
G Ino80 INO80 complex ATPase subunit involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:106,368,455...106,465,716
Ensembl chr 3:106,368,455...106,467,911
JBrowse link
G Ino80c INO80 complex subunit C involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr18:15,378,764...15,398,574
Ensembl chr18:15,378,770...15,393,403
JBrowse link
G Ino80e INO80 complex subunit E involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:181,461,406...181,472,059
Ensembl chr 1:181,461,408...181,472,469
JBrowse link
G Ints3 integrator complex subunit 3 involved_in ISO (PMID:19605351), (PMID:19683501) RGD PMID:19605351 PMID:19683501 NCBI chr 2:175,859,421...175,911,683
Ensembl chr 2:175,859,440...175,911,709
JBrowse link
G Kat7 lysine acetyltransferase 7 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:80,221,519...80,255,590
Ensembl chr10:80,221,524...80,255,567
JBrowse link
G Kif1b kinesin family member 1B involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 5:159,607,697...159,742,778
Ensembl chr 5:159,561,271...159,742,778
JBrowse link
G Kif22 kinesin family member 22 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 1:181,635,347...181,650,351
Ensembl chr 1:181,635,183...181,650,401
JBrowse link
G Kmt5b lysine methyltransferase 5B involved_in ISO
ISS
(PMID:28114273)
GO_REF:0000024
RGD
UniProt
PMID:28114273 GO_REF:0000024 NCBI chr 1:201,000,444...201,049,819
Ensembl chr 1:201,000,444...201,049,819
JBrowse link
G Kmt5c lysine methyltransferase 5C involved_in ISO
ISS
(PMID:28114273)
GO_REF:0000024
RGD
UniProt
PMID:28114273 GO_REF:0000024 NCBI chr 1:69,099,531...69,107,145
Ensembl chr 1:69,099,539...69,107,145
JBrowse link
G Lig1 DNA ligase 1 involved_in
NOT|acts_upstream_of_or_within
IDA
IEA
ISO
GO_REF:0000117
MGI:2179196 (MGI:2178155|PMID:11896201)
(MGI:4943978|PMID:21390131)
UniProt
RGD
PMID:11896201 PMID:21390131 PMID:1730240 GO_REF:0000117 MGI:2178155 MGI:4943978, RGD:724410 NCBI chr 1:74,165,688...74,204,400
Ensembl chr 1:74,165,842...74,204,413
JBrowse link
G Lig4 DNA ligase 4 acts_upstream_of_or_within ISO MGI:1857732 (MGI:3037169|PMID:11779495), (MGI:4943978|PMID:21390131) RGD PMID:11779495 PMID:21390131 MGI:3037169 MGI:4943978 NCBI chr16:79,518,393...79,526,956
Ensembl chr16:79,518,312...79,527,040
JBrowse link
G LOC108350839 high mobility group protein B1-like involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 4:91,306,902...91,309,095 JBrowse link
G LOC690117 similar to High mobility group protein 1 (HMG-1) (High mobility group protein B1) (Amphoterin) (Heparin-binding protein p30) involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr16:34,028,487...34,030,715
Ensembl chr16:34,028,446...34,030,648
JBrowse link
G Mbd4 methyl-CpG binding domain 4 DNA glycosylase involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 4:148,893,049...148,904,833
Ensembl chr 4:148,894,280...148,904,982
JBrowse link
G Mdc1 mediator of DNA damage checkpoint 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr20:2,893,693...2,912,394
Ensembl chr20:2,895,505...2,910,240
JBrowse link
G Mgmt O-6-methylguanine-DNA methyltransferase involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
(MGI:2677087|PMID:13679151)
RGD PMID:13679151 PMID:21873635 MGI:2677087, RGD:13792537 NCBI chr 1:191,710,980...191,937,760
Ensembl chr 1:191,710,930...191,937,756
JBrowse link
G Mlh1 mutL homolog 1 acts_upstream_of_or_within ISO MGI:1858054|MGI:1930998 (MGI:2677087|PMID:13679151), (MGI:3513725|PMID:15480418) RGD PMID:13679151 PMID:15480418 MGI:2677087 MGI:3513725 NCBI chr 8:111,196,468...111,233,721
Ensembl chr 8:111,196,468...111,233,617
JBrowse link
G Mms19 MMS19 homolog, cytosolic iron-sulfur assembly component involved_in ISO (PMID:22678362) RGD PMID:22678362 NCBI chr 1:240,757,279...240,794,291
Ensembl chr 1:240,757,282...240,794,288
JBrowse link
G Morf4l2 mortality factor 4 like 2 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr  X:100,082,562...100,093,658
Ensembl chr  X:100,082,404...100,093,728
JBrowse link
G Msh2 mutS homolog 2 involved_in
acts_upstream_of_or_within
ISO (PMID:8942985)
(MGI:2667543|PMID:12687013)
RGD PMID:8942985 PMID:12687013 MGI:2667543 NCBI chr 6:6,813,793...6,872,960
Ensembl chr 6:6,813,795...6,872,938
JBrowse link
G Msh3 mutS homolog 3 involved_in ISO (PMID:8942985) RGD PMID:8942985 NCBI chr 2:23,444,326...23,585,777 JBrowse link
G Msh6 mutS homolog 6 involved_in ISO (PMID:8942985) RGD PMID:8942985 NCBI chr 6:6,562,631...6,579,995
Ensembl chr 6:6,562,632...6,579,956
JBrowse link
G Mus81 MUS81 structure-specific endonuclease subunit involved_in ISO (PMID:19596235) RGD PMID:19596235 NCBI chr 1:202,790,295...202,796,008
Ensembl chr 1:202,790,466...202,795,843
JBrowse link
G Nabp1 nucleic acid binding protein 1 involved_in ISS
ISO
GO_REF:0000024
(PMID:19683501)
UniProt
RGD
PMID:19683501 GO_REF:0000024 NCBI chr 9:50,098,552...50,133,982
Ensembl chr 9:50,126,726...50,134,107
JBrowse link
G Nabp2 nucleic acid binding protein 2 involved_in ISO
ISS
(PMID:18449195), (PMID:19683501)
GO_REF:0000024
(MGI:5629774|PMID:25589350)
RGD
UniProt
PMID:18449195 PMID:19683501 PMID:25589350 GO_REF:0000024 MGI:5629774 NCBI chr 7:830,949...836,551
Ensembl chr 7:830,949...838,027
JBrowse link
G Neil1 nei-like DNA glycosylase 1 acts_upstream_of_or_within ISO (MGI:2389521|PMID:12200441) RGD PMID:12200441 MGI:2389521 NCBI chr 8:57,550,142...57,556,884
Ensembl chr 8:57,550,147...57,556,258
JBrowse link
G Nono non-POU domain containing, octamer-binding involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr  X:66,554,131...66,571,992
Ensembl chr  X:66,554,098...66,571,952
JBrowse link
G Nop53 NOP53 ribosome biogenesis factor involved_in ISO (PMID:21741933) RGD PMID:21741933 NCBI chr 1:76,629,084...76,636,902
Ensembl chr 1:76,629,069...76,636,902
JBrowse link
G Npm1 nucleophosmin 1 involved_in ISO
ISS
(PMID:19188445)
GO_REF:0000024
RGD
UniProt
PMID:19188445 GO_REF:0000024 NCBI chr10:17,741,512...17,751,626
Ensembl chr10:17,739,941...17,751,645
JBrowse link
G Nsmce1 NSE1 homolog, SMC5-SMC6 complex component involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 1:180,030,355...180,058,541
Ensembl chr 1:180,030,160...180,058,417
JBrowse link
G Nsmce3 NSE3 homolog, SMC5-SMC6 complex component involved_in ISO (PMID:27427983) RGD PMID:27427983 NCBI chr 1:118,401,302...118,402,629 JBrowse link
G Nsmce4a NSE4 homolog A, SMC5-SMC6 complex component involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:185,102,075...185,109,166
Ensembl chr 1:185,094,360...185,109,166
JBrowse link
G Ogg1 8-oxoguanine DNA glycosylase acts_upstream_of_or_within ISO MGI:1100494|MGI:2386212|MGI:2386943 (MGI:2150199|PMID:11532868), (MGI:2668786|PMID:12874039), (MGI:3715683|PMID:17213818), (MGI:3759387|PMID:12447686) RGD PMID:11532868 PMID:12447686 PMID:12874039 PMID:17213818 MGI:2150199 MGI:2668786 MGI:3715683 MGI:3759387 NCBI chr 4:146,474,701...146,481,959
Ensembl chr 4:146,474,750...146,484,766
JBrowse link
G Otub1 OTU deubiquitinase, ubiquitin aldehyde binding 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:204,387,215...204,395,495
Ensembl chr 1:204,387,215...204,395,483
JBrowse link
G Pagr1 Paxip1-associated glutamate-rich protein 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:181,622,708...181,624,996 JBrowse link
G Park7 Parkinsonism associated deglycase involved_in ISO
ISS
(PMID:28596309)
GO_REF:0000024
RGD
UniProt
PMID:28596309 GO_REF:0000024 NCBI chr 5:161,353,718...161,376,993
Ensembl chr 5:161,353,719...161,376,970
JBrowse link
G Parpbp PARP1 binding protein involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 7:22,511,427...22,580,834
Ensembl chr 7:22,511,427...22,573,695
JBrowse link
G Pds5a PDS5 cohesin associated factor A involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:42,551,653...42,651,074
Ensembl chr14:42,552,647...42,648,669
JBrowse link
G Pds5b PDS5 cohesin associated factor B involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:202,481...345,596
Ensembl chr12:255,313...345,596
JBrowse link
G Pgd phosphogluconate dehydrogenase involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 5:159,582,746...159,598,945
Ensembl chr 5:159,561,271...159,742,778
JBrowse link
G Pif1 PIF1 5'-to-3' DNA helicase involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 8:66,110,641...66,120,202
Ensembl chr 8:66,111,072...66,120,200
JBrowse link
G Pms2 PMS1 homolog 2, mismatch repair system component acts_upstream_of_or_within ISO MGI:1857947 (MGI:3513725|PMID:15480418) RGD PMID:15480418 MGI:3513725 NCBI chr12:10,676,819...10,701,161
Ensembl chr12:10,676,764...10,701,066
JBrowse link
G Pnkp polynucleotide kinase 3'-phosphatase involved_in IBA
ISO
PMID:21873635
UniProtKB:J7Q8E6|UniProtKB:J7QRV0 (PMID:10446192)
RGD PMID:10446192 PMID:21873635 RGD:13792537 NCBI chr 1:95,341,465...95,346,921
Ensembl chr 1:95,341,620...95,346,920
JBrowse link
G Pola1 DNA polymerase alpha 1, catalytic subunit involved_in
NOT|involved_in
ISO
ISS
(PMID:11470886)
GO_REF:0000024
(PMID:3335506)
RGD
UniProt
PMID:3335506 PMID:11470886 GO_REF:0000024 NCBI chr  X:58,034,617...58,348,612
Ensembl chr  X:58,034,619...58,348,536
JBrowse link
G Polg2 DNA polymerase gamma 2, accessory subunit involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:91,712,586...91,723,008
Ensembl chr10:91,712,586...91,723,008
JBrowse link
G Polk DNA polymerase kappa involved_in
acts_upstream_of_or_within
ISO (PMID:28297716)
MGI:2445458 (MGI:2445277|PMID:12555660)
RGD PMID:12555660 PMID:28297716 MGI:2445277 NCBI chr 2:27,822,228...27,882,331
Ensembl chr 2:27,822,679...27,882,313
JBrowse link
G Polq DNA polymerase theta acts_upstream_of_or_within ISO MGI:107202|MGI:2656007 (MGI:2654407|PMID:12663541), (MGI:3511081|PMID:15542845) RGD PMID:12663541 PMID:15542845 MGI:2654407 MGI:3511081 NCBI chr11:63,673,796...63,775,905
Ensembl chr11:63,673,816...63,775,878
JBrowse link
G Psme4 proteasome activator subunit 4 involved_in ISO (MGI:5494329|PMID:23706739) RGD PMID:23706739 MGI:5494329 NCBI chr14:104,505,716...104,609,410
Ensembl chr14:104,505,716...104,609,408
JBrowse link
G Pttg1 PTTG1 regulator of sister chromatid separation, securin involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:27,893,466...27,904,965
Ensembl chr10:27,893,689...27,904,837
JBrowse link
G Pwwp3a PWWP domain containing 3A, DNA repair factor involved_in ISS
IBA
ISO
GO_REF:0000024
PMID:21873635
(PMID:20347427)
UniProt
RGD
PMID:20347427 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 7:9,465,180...9,482,053
Ensembl chr 7:9,465,195...9,481,966
JBrowse link
G Rad1 RAD1 checkpoint DNA exonuclease involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:59,461,597...59,469,707
Ensembl chr 2:59,461,607...59,469,689
JBrowse link
G Rad17 RAD17 checkpoint clamp loader component involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:31,764,260...31,794,542
Ensembl chr 2:31,764,261...31,794,072
JBrowse link
G Rad50 RAD50 double strand break repair protein involved_in ISS
ISO
GO_REF:0000024
(PMID:9705271)
UniProt
RGD
PMID:9705271 GO_REF:0000024 NCBI chr10:37,809,353...37,861,309
Ensembl chr10:37,808,726...37,861,396
JBrowse link
G Rad51c RAD51 paralog C involved_in ISO (PMID:19451272) RGD PMID:19451272 NCBI chr10:72,205,032...72,231,643
Ensembl chr10:72,205,032...72,231,248
JBrowse link
G Rad9a RAD9 checkpoint clamp component A involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:201,488,511...201,553,582
Ensembl chr 1:201,487,136...201,553,608
JBrowse link
G Rad9b RAD9 checkpoint clamp component B involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:34,217,868...34,248,380
Ensembl chr12:34,218,024...34,248,372
JBrowse link
G Recql RecQ like helicase involved_in IBA
IEA
PMID:21873635
GO_REF:0000002
InterPro PMID:21873635 GO_REF:0000002, RGD:13792537 NCBI chr 4:175,308,337...175,332,965
Ensembl chr 4:175,304,117...175,332,945
JBrowse link
G Recql4 RecQ like helicase 4 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:108,423,453...108,430,790
Ensembl chr 7:108,423,455...108,430,619
JBrowse link
G Recql5 RecQ like helicase 5 involved_in ISS
IBA
ISO
GO_REF:0000024
PMID:21873635
(PMID:22973052)
UniProt
RGD
PMID:22973052 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr10:101,126,544...101,165,739
Ensembl chr10:101,126,547...101,165,652
JBrowse link
G Rev1 REV1, DNA directed polymerase involved_in ISO (PMID:21926160) RGD PMID:21926160 NCBI chr 9:40,278,100...40,351,764
Ensembl chr 9:40,278,101...40,351,576
JBrowse link
G Rev3l REV3 like, DNA directed polymerase zeta catalytic subunit acts_upstream_of_or_within ISO MGI:2183197 (MGI:2176643|PMID:11884603) RGD PMID:11884603 MGI:2176643 NCBI chr20:43,131,841...43,290,102
Ensembl chr20:43,132,363...43,290,099
JBrowse link
G Rexo4 REX4 homolog, 3'-5' exonuclease involved_in ISO (PMID:21602889) RGD PMID:21602889 NCBI chr 3:10,280,654...10,291,003
Ensembl chr 3:10,280,654...10,290,996
JBrowse link
G Rfc1 replication factor C subunit 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr14:42,966,279...43,041,372
Ensembl chr14:42,966,324...43,041,370
JBrowse link
G Rfc2 replication factor C subunit 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:22,120,449...22,133,576
Ensembl chr12:22,120,010...22,133,557
JBrowse link
G Rfc3 replication factor C subunit 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:1,000,987...1,011,778
Ensembl chr12:1,000,994...1,011,778
JBrowse link
G Rfc4 replication factor C subunit 4 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr11:77,749,642...77,764,123
Ensembl chr11:77,749,638...77,764,122
JBrowse link
G Rfc5 replication factor C subunit 5 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:39,207,484...39,217,041
Ensembl chr12:39,207,484...39,217,312
JBrowse link
G RGD1560831 similar to 40S ribosomal protein S3 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 3:51,559,683...51,560,522
Ensembl chr 3:51,559,683...51,560,524
JBrowse link
G RGD1563668 similar to High mobility group protein 1 (HMG-1) involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:39,768,658...39,769,408
Ensembl chr10:39,768,658...39,769,293
JBrowse link
G RGD1564855 similar to RuvB-like protein 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr  X:1,640,138...1,641,886
Ensembl chr  X:1,640,300...1,641,811
JBrowse link
G Rpa1 replication protein A1 involved_in ISO (PMID:18469000), (PMID:20545304) RGD PMID:18469000 PMID:20545304 NCBI chr10:60,148,869...60,199,999
Ensembl chr10:60,148,793...60,199,949
JBrowse link
G Rpa3 replication protein A3 involved_in ISO (PMID:20545304) RGD PMID:20545304 NCBI chr 4:36,304,649...36,307,755
Ensembl chr 4:36,304,651...36,307,709
JBrowse link
G Rpain RPA interacting protein acts_upstream_of_or_within ISO UniProtKB:P27694 (PMID:16135809) RGD PMID:16135809 NCBI chr10:55,692,410...55,699,910
Ensembl chr10:55,692,417...55,699,933
JBrowse link
G Rps3 ribosomal protein S3 involved_in IEA
ISO
GO_REF:0000043
(PMID:19059439)
UniProt
RGD
PMID:19059439 GO_REF:0000043 NCBI chr 1:153,778,363...153,783,663
Ensembl chr 1:153,777,472...153,783,680
JBrowse link
G Rrm1 ribonucleotide reductase catalytic subunit M1 involved_in ISO (PMID:11719458) RGD PMID:11719458 NCBI chr 1:156,823,960...156,848,262
Ensembl chr 1:156,823,960...156,848,261
JBrowse link
G Rrm2b ribonucleotide reductase regulatory TP53 inducible subunit M2B acts_upstream_of_or_within
involved_in
ISO MGI:2672883 (MGI:2670318|PMID:12858174)
(PMID:11719458)
RGD PMID:11719458 PMID:12858174 MGI:2670318 NCBI chr 7:69,077,024...69,108,742
Ensembl chr 7:69,078,291...69,108,633
JBrowse link
G Rtel1 regulator of telomere elongation helicase 1 involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 3:168,427,247...168,465,349
Ensembl chr 3:168,419,579...168,465,348
JBrowse link
G Ruvbl1 RuvB-like AAA ATPase 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 4:120,932,486...120,967,400
Ensembl chr 4:120,932,417...121,029,384
JBrowse link
G Ruvbl2 RuvB-like AAA ATPase 2 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:95,902,014...95,915,364
Ensembl chr 1:95,901,701...95,915,342
JBrowse link
G Sirt6 sirtuin 6 involved_in ISO (MGI:6694658|PMID:32584788) RGD PMID:32584788 MGI:6694658 NCBI chr 7:8,082,312...8,087,776
Ensembl chr 7:8,082,364...8,098,914
JBrowse link
G Sirt7 sirtuin 7 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:105,896,476...105,903,301
Ensembl chr10:105,896,476...105,903,172
JBrowse link
G Slx1b SLX1 homolog B, structure-specific endonuclease subunit involved_in ISO (PMID:19595721), (PMID:19595722), (PMID:19596235), (PMID:19596236) RGD PMID:19595721 PMID:19595722 PMID:19596235 PMID:19596236 NCBI chr 1:181,286,190...181,291,739
Ensembl chr 1:181,283,921...181,291,775
JBrowse link
G Slx4 SLX4 structure-specific endonuclease subunit involved_in ISO (PMID:19595722) RGD PMID:19595722 NCBI chr10:11,526,563...11,549,291
Ensembl chr10:11,528,424...11,549,295
JBrowse link
G Smarca5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 involved_in ISO (PMID:23911928) RGD PMID:23911928 NCBI chr19:27,271,918...27,304,594
Ensembl chr19:27,271,148...27,304,594
JBrowse link
G Smarcal1 Swi/SNF related matrix associated, actin dependent regulator of chromatin, subfamily a-like 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:74,239,718...74,286,156
Ensembl chr 9:74,240,241...74,286,146
JBrowse link
G Smc1a structural maintenance of chromosomes 1A involved_in IEA GO_REF:0000002
GO_REF:0000043
InterPro
UniProt
GO_REF:0000002 GO_REF:0000043 NCBI chr  X:21,103,323...21,148,053
Ensembl chr  X:21,103,282...21,148,056
JBrowse link
G Smc3 structural maintenance of chromosomes 3 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:252,601,422...252,644,522
Ensembl chr 1:252,601,753...252,644,522
JBrowse link
G Smug1 single-strand-selective monofunctional uracil-DNA glycosylase 1 IDA RGD PMID:12718542 RGD:2317001 NCBI chr 7:134,288,565...134,302,179
Ensembl chr 7:134,287,675...134,297,226
JBrowse link
G Ssrp1 structure specific recognition protein 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 3:70,124,371...70,134,481
Ensembl chr 3:70,118,655...70,134,482
JBrowse link
G Supt16h SPT16 homolog, facilitates chromatin remodeling subunit involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr15:24,867,697...24,904,818
Ensembl chr15:24,866,489...24,904,846
JBrowse link
G Taok1 TAO kinase 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:62,373,076...62,465,295
Ensembl chr10:62,381,404...62,465,766
JBrowse link
G Taok3 TAO kinase 3 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr12:39,314,027...39,394,243
Ensembl chr12:39,314,027...39,461,244
JBrowse link
G Tdp1 tyrosyl-DNA phosphodiesterase 1 involved_in
acts_upstream_of_or_within
ISO
IEA
(PMID:17948061)
GO_REF:0000043
(MGI:4943978|PMID:21390131)
RGD
UniProt
PMID:17948061 PMID:21390131 GO_REF:0000043 MGI:4943978 NCBI chr 6:119,163,192...119,231,029
Ensembl chr 6:119,163,166...119,231,021
JBrowse link
G Tfpt TCF3 fusion partner involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:65,587,855...65,597,407
Ensembl chr 1:65,582,359...65,611,689
JBrowse link
G Timeless timeless circadian regulator involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:654,804...678,769
Ensembl chr 7:654,822...678,738
JBrowse link
G Tp53bp1 tumor protein p53 binding protein 1 acts_upstream_of_or_within ISO (MGI:3053255|PMID:15364958) RGD PMID:15364958 MGI:3053255 NCBI chr 3:108,166,574...108,270,229
Ensembl chr 3:108,169,980...108,269,822
JBrowse link
G Trex2 three prime repair exonuclease 2 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr  X:151,151,862...151,153,470
Ensembl chr  X:151,151,864...151,153,479
JBrowse link
G Trim28 tripartite motif-containing 28 involved_in ISO (PMID:17178852) RGD PMID:17178852 NCBI chr 1:73,652,441...73,659,388
Ensembl chr 1:73,652,709...73,659,380
JBrowse link
G Trip12 thyroid hormone receptor interactor 12 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 9:85,916,691...86,043,312
Ensembl chr 9:85,916,691...86,051,403
JBrowse link
G Ttc5 tetratricopeptide repeat domain 5 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr15:23,993,046...24,010,710
Ensembl chr15:23,993,048...24,010,668
JBrowse link
G Ttf2 transcription termination factor 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:188,366,321...188,397,750
Ensembl chr 2:188,366,331...188,397,689
JBrowse link
G Ube2a ubiquitin-conjugating enzyme E2A involved_in ISO
IBA
UniProtKB:P06104 (PMID:1717990)
PMID:21873635
RGD PMID:1717990 PMID:21873635 RGD:13792537 NCBI chr  X:116,114,339...116,125,076
Ensembl chr  X:116,113,875...116,125,070
JBrowse link
G Ube2b ubiquitin-conjugating enzyme E2B involved_in ISO
IBA
UniProtKB:P06104 (PMID:1717990)
PMID:21873635
RGD PMID:1717990 PMID:21873635 RGD:13792537 NCBI chr10:36,248,434...36,263,379
Ensembl chr10:36,248,438...36,264,665
JBrowse link
G Ube2d3 ubiquitin-conjugating enzyme E2D 3 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 2:223,868,397...223,899,606
Ensembl chr 2:223,868,730...223,898,081
JBrowse link
G Ube2t ubiquitin-conjugating enzyme E2T involved_in ISO (PMID:16916645) RGD PMID:16916645 NCBI chr13:46,403,352...46,413,854
Ensembl chr13:46,403,375...46,414,835
JBrowse link
G Ube2u ubiquitin conjugating enzyme E2 U involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:115,118,234...115,187,296
Ensembl chr 5:115,118,495...115,186,874
JBrowse link
G Ube2w ubiquitin-conjugating enzyme E2W involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 5:2,690,742...2,754,491
Ensembl chr 5:2,690,763...2,814,965
JBrowse link
G Ubr5 ubiquitin protein ligase E3 component n-recognin 5 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 7:69,116,758...69,224,490
Ensembl chr 7:69,116,761...69,224,903
JBrowse link
G Ufl1 Ufm1-specific ligase 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 5:38,962,721...38,995,134
Ensembl chr 5:38,962,171...38,995,199
JBrowse link
G Uhrf1 ubiquitin-like with PHD and ring finger domains 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 9:1,133,117...1,154,639
Ensembl chr 9:1,134,909...1,154,631
JBrowse link
G Ung uracil-DNA glycosylase TAS RGD PMID:12167490 RGD:634481 NCBI chr12:42,485,276...42,494,217
Ensembl chr12:42,485,276...42,494,206
JBrowse link
G Upf1 UPF1, RNA helicase and ATPase involved_in ISO (PMID:16488880) RGD PMID:16488880 NCBI chr16:19,076,594...19,097,365
Ensembl chr16:19,076,322...19,096,568
JBrowse link
G Usp1 ubiquitin specific peptidase 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 5:113,587,564...113,598,934
Ensembl chr 5:113,587,564...113,598,932
JBrowse link
G Usp10 ubiquitin specific peptidase 10 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr19:47,972,858...48,014,900
Ensembl chr19:47,972,611...48,014,897
JBrowse link
G Usp28 ubiquitin specific peptidase 28 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 8:49,325,766...49,386,229
Ensembl chr 8:49,325,867...49,386,229
JBrowse link
G Usp3 ubiquitin specific peptidase 3 involved_in ISO (PMID:17980597) RGD PMID:17980597 NCBI chr 8:67,078,249...67,154,109
Ensembl chr 8:67,079,927...67,154,111
JBrowse link
G Usp45 ubiquitin specific peptidase 45 acts_upstream_of_or_within ISO (PMID:25538220) RGD PMID:25538220 NCBI chr 5:35,318,621...35,392,090
Ensembl chr 5:35,318,635...35,389,420
JBrowse link
G Uvrag UV radiation resistance associated involved_in ISO (PMID:22542840)
(MGI:5644018|PMID:22542840)
RGD PMID:22542840 MGI:5644018 NCBI chr 1:153,185,356...153,442,200
Ensembl chr 1:153,185,395...153,442,136
JBrowse link
G Vcp valosin-containing protein involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 5:57,210,167...57,229,571
Ensembl chr 5:57,210,168...57,229,571
JBrowse link
G Wdhd1 WD repeat and HMG-box DNA binding protein 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:20,478,310...20,523,106
Ensembl chr15:20,489,291...20,523,096
JBrowse link
G Wrap53 WD repeat containing, antisense to TP53 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:54,282,092...54,299,908
Ensembl chr10:54,282,105...54,298,929
JBrowse link
G Wrn WRN RecQ like helicase involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:58,763,517...58,898,604
Ensembl chr16:58,763,504...58,895,450
JBrowse link
G Xpa XPA, DNA damage recognition and repair factor involved_in
acts_upstream_of_or_within
ISO (PMID:1601884)
MGI:1857939 (MGI:1270007|PMID:9661901), (MGI:2179786|PMID:11950998)
RGD PMID:1601884 PMID:9661901 PMID:11950998 MGI:1270007 MGI:2179786 NCBI chr 5:60,431,673...60,476,438
Ensembl chr 5:60,431,673...60,475,726
JBrowse link
G Xpc XPC complex subunit, DNA damage recognition and repair factor acts_upstream_of_or_within ISO MGI:1859840 (MGI:2445277|PMID:12555660) RGD PMID:12555660 MGI:2445277 NCBI chr 4:123,993,670...124,020,922
Ensembl chr 4:123,993,666...124,021,010
JBrowse link
G Xrcc1 X-ray repair cross complementing 1 acts_upstream_of_or_within ISO MGI:3836442 (MGI:4359093|PMID:19633665) RGD PMID:19633665 MGI:4359093 NCBI chr 1:80,140,495...80,168,705
Ensembl chr 1:80,141,207...80,168,701
JBrowse link
G Xrcc2 X-ray repair cross complementing 2 involved_in ISO (PMID:10422536) RGD PMID:10422536 NCBI chr 4:9,423,873...9,502,980
Ensembl chr 4:9,423,898...9,442,482
JBrowse link
G Xrcc3 X-ray repair cross complementing 3 involved_in ISO (PMID:10422536) RGD PMID:10422536 NCBI chr 6:130,863,405...130,873,765
Ensembl chr 6:130,863,959...130,872,444
JBrowse link
G Zbtb1 zinc finger and BTB domain containing 1 involved_in ISO (PMID:24657165) RGD PMID:24657165 NCBI chr 6:95,096,838...95,125,811
Ensembl chr 6:95,096,387...95,118,996
JBrowse link
G Zmpste24 zinc metallopeptidase STE24 acts_upstream_of_or_within ISO MGI:1931221|MGI:2180033 (MGI:3583382|PMID:15980864), (MGI:5139938|PMID:21746928) RGD PMID:15980864 PMID:21746928 MGI:3583382 MGI:5139938 NCBI chr 5:134,627,218...134,660,360
Ensembl chr 5:134,627,229...134,660,110
JBrowse link
G Zranb3 zinc finger RANBP2-type containing 3 involved_in ISO
IBA
(PMID:22759634)
PMID:21873635
RGD PMID:22759634 PMID:21873635 RGD:13792537 NCBI chr13:39,440,653...39,595,782
Ensembl chr13:39,440,889...39,595,670
JBrowse link
DNA replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adra2a adrenoceptor alpha 2A IMP RGD PMID:15351511 RGD:1625185 NCBI chr 1:253,061,480...253,064,280
Ensembl chr 1:253,060,218...253,064,365
JBrowse link
G Blm BLM RecQ like helicase involved_in ISO UniProtKB:O09053 (MGI:5700122|PMID:26195664) RGD PMID:26195664 MGI:5700122 NCBI chr 1:134,409,832...134,496,073
Ensembl chr 1:134,409,857...134,484,312
JBrowse link
G Btc betacellulin TAS RGD PMID:14988244 RGD:1357906 NCBI chr14:16,708,447...16,746,961
Ensembl chr14:16,707,982...16,747,049
JBrowse link
G Chaf1a chromatin assembly factor 1 subunit A involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 9:873,953...900,701
Ensembl chr 9:874,051...900,654
JBrowse link
G Chtf8 chromosome transmission fidelity factor 8 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr19:34,782,005...34,792,306
Ensembl chr19:34,781,856...34,792,578
JBrowse link
G Dna2 DNA replication helicase/nuclease 2 involved_in ISO
ISS
(PMID:22570476)
GO_REF:0000024
RGD
UniProt
PMID:22570476 GO_REF:0000024 NCBI chr20:25,661,652...25,690,598
Ensembl chr20:25,662,055...25,716,319
JBrowse link
G Dnajc2 DnaJ heat shock protein family (Hsp40) member C2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(MGI:76992|PMID:7559602)
Ensembl
RGD
PMID:7559602 GO_REF:0000107 MGI:76992 NCBI chr 4:13,270,239...13,297,438
Ensembl chr 4:13,270,191...13,297,431
JBrowse link
G Donson DNA replication fork stabilization factor DONSON involved_in ISO (PMID:28191891) RGD PMID:28191891 NCBI chr11:30,911,616...30,933,150
Ensembl chr11:30,923,239...30,932,889
JBrowse link
G Dscc1 DNA replication and sister chromatid cohesion 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 7:86,482,588...86,498,212
Ensembl chr 7:86,482,588...86,498,212
JBrowse link
G E4f1 E4F transcription factor 1 acts_upstream_of_or_within ISO MGI:3050154 (MGI:3047042|PMID:15226446) RGD PMID:15226446 MGI:3047042 NCBI chr10:13,471,478...13,495,018
Ensembl chr10:13,474,456...13,485,974
JBrowse link
G Fam111a FAM111 trypsin like peptidase A involved_in IBA
ISO
PMID:21873635
(PMID:24561620)
RGD PMID:24561620 PMID:21873635 RGD:13792537 NCBI chr 1:209,640,865...209,656,551
Ensembl chr 1:209,640,953...209,656,547
JBrowse link
G Fen1 flap structure-specific endonuclease 1 acts_upstream_of_or_within ISO MGI:2670036 (MGI:2668283|PMID:12861020) RGD PMID:12861020 MGI:2668283 NCBI chr 1:206,845,126...206,849,821
Ensembl chr 1:206,844,884...206,850,003
JBrowse link
G Fhit fragile histidine triad diadenosine triphosphatase acts_upstream_of_or_within ISO (MGI:3052267|PMID:15254237) RGD PMID:15254237 MGI:3052267 NCBI chr15:13,935,029...15,442,620
Ensembl chr15:13,934,995...15,442,340
JBrowse link
G Gins1 GINS complex subunit 1 acts_upstream_of_or_within ISO MGI:3706309 (MGI:3703396|PMID:16287864) RGD PMID:16287864 MGI:3703396 NCBI chr 3:139,724,513...139,745,930
Ensembl chr 3:139,724,490...139,745,936
JBrowse link
G Gmnc geminin coiled-coil domain containing involved_in ISO (MGI:4457452|PMID:20383140) RGD PMID:20383140 MGI:4457452 NCBI chr11:73,836,255...73,847,698
Ensembl chr11:73,814,533...73,847,328
JBrowse link
G Grwd1 glutamate-rich WD repeat containing 1 involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:25990725)
UniProt
Ensembl
RGD
PMID:25990725 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:96,301,260...96,306,962
Ensembl chr 1:96,301,261...96,307,201
JBrowse link
G Helb DNA helicase B involved_in ISO (PMID:12181327) RGD PMID:12181327 NCBI chr 7:55,588,510...55,615,979
Ensembl chr 7:55,588,798...55,615,585
JBrowse link
G Ing4 inhibitor of growth family, member 4 involved_in ISO (PMID:16387653) RGD PMID:16387653 NCBI chr 4:157,841,882...157,850,519
Ensembl chr 4:157,841,951...157,850,265
JBrowse link
G Ing5 inhibitor of growth family, member 5 involved_in ISO (PMID:16387653) RGD PMID:16387653 NCBI chr 9:94,326,919...94,344,220
Ensembl chr 9:94,326,548...94,344,220
JBrowse link
G Kat7 lysine acetyltransferase 7 involved_in ISS
ISO
GO_REF:0000024
(PMID:16387653)
UniProt
RGD
PMID:16387653 GO_REF:0000024 NCBI chr10:80,221,519...80,255,590
Ensembl chr10:80,221,524...80,255,567
JBrowse link
G Kin Kin17 DNA and RNA binding protein involved_in IBA
ISO
PMID:21873635
(MGI:84658|PMID:8954809)
(PMID:12359749)
RGD PMID:8954809 PMID:12359749 PMID:21873635 MGI:84658, RGD:13792537 NCBI chr17:68,413,483...68,431,392
Ensembl chr17:68,413,486...68,423,845
JBrowse link
G Lig1 DNA ligase 1 acts_upstream_of_or_within ISO MGI:2179196 (MGI:2178155|PMID:11896201) RGD PMID:11896201 MGI:2178155 NCBI chr 1:74,165,688...74,204,400
Ensembl chr 1:74,165,842...74,204,413
JBrowse link
G Lig4 DNA ligase 4 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr16:79,518,393...79,526,956
Ensembl chr16:79,518,312...79,527,040
JBrowse link
G LOC100362927 replication protein A3-like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:45,908,653...45,909,063
Ensembl chr12:45,908,683...45,909,048
JBrowse link
G Lrwd1 leucine-rich repeats and WD repeat domain containing 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr12:20,530,072...20,543,078
Ensembl chr12:20,530,012...20,549,536
JBrowse link
G Mcm7 minichromosome maintenance complex component 7 TAS RGD PMID:12677008 RGD:1304505 NCBI chr12:17,042,207...17,049,470
Ensembl chr12:17,042,212...17,050,063
JBrowse link
G Mcm8 minichromosome maintenance 8 homologous recombination repair factor NOT|involved_in ISO UniProtKB:Q9NXL9 (PMID:23401855) RGD PMID:23401855 NCBI chr 3:120,086,741...120,117,008
Ensembl chr 3:120,086,763...120,117,008
JBrowse link
G Mcm9 minichromosome maintenance 9 homologous recombination repair factor NOT|involved_in ISO UniProtKB:Q9UJA3 (PMID:23401855)
(MGI:5295089|PMID:21987787), (MGI:5525985|PMID:23401855)
RGD PMID:21987787 PMID:23401855 MGI:5295089 MGI:5525985 NCBI chr20:32,818,219...32,929,577
Ensembl chr20:32,844,951...32,929,600
JBrowse link
G Mcmdc1 minichromosome maintenance deficient domain containing 1 NOT|involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024
G Nasp nuclear autoantigenic sperm protein involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 5:130,057,363...130,083,003
Ensembl chr 5:130,057,363...130,082,928
JBrowse link
G Nfia nuclear factor I/A involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 5:112,436,655...112,781,878
Ensembl chr 5:112,436,644...112,775,885
JBrowse link
G Nfib nuclear factor I/B involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 5:96,759,208...96,973,092
Ensembl chr 5:96,764,653...96,975,479
JBrowse link
G Nfic nuclear factor I/C involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 7:8,278,210...8,309,936
Ensembl chr 7:8,253,361...8,309,936
JBrowse link
G Nfix nuclear factor I X involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr19:23,355,388...23,450,360
Ensembl chr19:23,355,498...23,448,265
JBrowse link
G Orc1 origin recognition complex, subunit 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 5:123,324,273...123,348,375
Ensembl chr 5:123,324,315...123,348,375
JBrowse link
G Orc2 origin recognition complex, subunit 2 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 9:60,001,631...60,038,301
Ensembl chr 9:60,001,910...60,038,195
JBrowse link
G Orc3 origin recognition complex, subunit 3 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 5:49,123,758...49,181,552
Ensembl chr 5:49,126,955...49,181,633
JBrowse link
G Pclaf PCNA clamp associated factor involved_in ISO
ISS
(PMID:23000965)
GO_REF:0000024
RGD
UniProt
PMID:23000965 GO_REF:0000024 NCBI chr 8:66,420,673...66,432,568
Ensembl chr 8:66,420,587...66,432,994
Ensembl chr 8:66,420,587...66,432,994
JBrowse link
G Pif1 PIF1 5'-to-3' DNA helicase involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:66,110,641...66,120,202
Ensembl chr 8:66,111,072...66,120,200
JBrowse link
G Pola1 DNA polymerase alpha 1, catalytic subunit acts_upstream_of_or_within
involved_in
IMP
ISO
ISS
(MGI:1203906|PMID:9584195), (MGI:64718|PMID:8106564), (MGI:67849|PMID:8125989)
(PMID:16762037), (PMID:31006512), (PMID:3917431), (PMID:4084590)
GO_REF:0000024
RGD
UniProt
PMID:3917431 PMID:4084590 PMID:8106564 PMID:8125989 PMID:9584195 More... GO_REF:0000024 MGI:1203906 MGI:64718 MGI:67849, RGD:1580606, RGD:2307013 NCBI chr  X:58,034,617...58,348,612
Ensembl chr  X:58,034,619...58,348,536
JBrowse link
G Pola2 DNA polymerase alpha 2, accessory subunit involved_in
acts_upstream_of_or_within
TAS
IEA
ISO
IMP
GO_REF:0000117
(MGI:1203906|PMID:9584195)
UniProt
RGD
PMID:9584195 PMID:11536367 PMID:7503737 GO_REF:0000117 MGI:1203906, RGD:633584, RGD:2307013 NCBI chr 1:203,227,183...203,251,350
Ensembl chr 1:203,203,388...203,251,348
JBrowse link
G Polb DNA polymerase beta involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr16:69,379,438...69,402,710
Ensembl chr16:69,379,400...69,404,812
JBrowse link
G Pold1 DNA polymerase delta 1, catalytic subunit involved_in IDA
ISO
(PMID:16762037) RGD PMID:16762037 PMID:10541966 RGD:729526 NCBI chr 1:95,025,462...95,041,559
Ensembl chr 1:95,025,499...95,036,465
JBrowse link
G Pold2 DNA polymerase delta 2, accessory subunit IDA RGD PMID:10541966 RGD:729526 NCBI chr14:80,748,971...80,755,188
Ensembl chr14:80,748,974...80,755,160
JBrowse link
G Pole DNA polymerase epsilon, catalytic subunit involved_in ISO (PMID:16762037) RGD PMID:16762037 NCBI chr12:46,345,420...46,393,984
Ensembl chr12:46,345,420...46,393,939
JBrowse link
G Poll DNA polymerase lambda involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:244,400,202...244,408,762
Ensembl chr 1:244,400,204...244,408,662
JBrowse link
G Prim1 DNA primase subunit 1 NAS RGD PMID:9116489 RGD:724584 NCBI chr 7:446,342...462,526
Ensembl chr 7:431,805...462,526
JBrowse link
G Prim2 DNA primase subunit 2 NAS RGD PMID:11536367 RGD:633584 NCBI chr 9:35,692,376...35,904,521
Ensembl chr 9:35,692,376...35,903,030
JBrowse link
G Rbbp7 RB binding protein 7, chromatin remodeling factor involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr  X:31,913,080...31,931,245
Ensembl chr  X:31,913,081...31,931,226
JBrowse link
G Rbms1 RNA binding motif, single stranded interacting protein 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 3:45,195,828...45,420,406
Ensembl chr 3:45,197,972...45,420,376
JBrowse link
G Recql RecQ like helicase involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 4:175,308,337...175,332,965
Ensembl chr 4:175,304,117...175,332,945
JBrowse link
G Recql4 RecQ like helicase 4 involved_in ISO (PMID:22039056) RGD PMID:22039056 NCBI chr 7:108,423,453...108,430,790
Ensembl chr 7:108,423,455...108,430,619
JBrowse link
G Recql5 RecQ like helicase 5 involved_in ISO
ISS
(PMID:22013166)
GO_REF:0000024
RGD
UniProt
PMID:22013166 GO_REF:0000024 NCBI chr10:101,126,544...101,165,739
Ensembl chr10:101,126,547...101,165,652
JBrowse link
G Repin1 replication initiator 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 4:77,548,722...77,554,242
Ensembl chr 4:77,548,849...77,554,257
JBrowse link
G Rfc1 replication factor C subunit 1 involved_in IEA GO_REF:0000043
GO_REF:0000002
UniProt
InterPro
GO_REF:0000002 GO_REF:0000043 NCBI chr14:42,966,279...43,041,372
Ensembl chr14:42,966,324...43,041,370
JBrowse link
G Rfc3 replication factor C subunit 3 involved_in ISO (PMID:9488738) RGD PMID:9488738 NCBI chr12:1,000,987...1,011,778
Ensembl chr12:1,000,994...1,011,778
JBrowse link
G Rmi1 RecQ mediated genome instability 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr17:6,256,537...6,264,523
Ensembl chr17:6,256,450...6,264,695
JBrowse link
G Rpa1 replication protein A1 involved_in IC
ISO
(PMID:9430682) RGD PMID:9430682 PMID:7503737 RGD:2307013 NCBI chr10:60,148,869...60,199,999
Ensembl chr10:60,148,793...60,199,949
JBrowse link
G Rpa2 replication protein A2 involved_in IC
ISS
IBA
ISO
GO_REF:0000024
PMID:21873635
(PMID:2406247), (PMID:9430682)
UniProt
RGD
PMID:2406247 PMID:9430682 PMID:7503737 PMID:21873635 GO_REF:0000024, RGD:2307013, RGD:13792537 NCBI chr 5:144,976,789...144,989,445
Ensembl chr 5:144,976,748...144,987,350
JBrowse link
G Rpa3 replication protein A3 involved_in IC
IBA
ISO
PMID:21873635
(PMID:9430682)
RGD PMID:9430682 PMID:7503737 PMID:21873635 RGD:2307013, RGD:13792537 NCBI chr 4:36,304,649...36,307,755
Ensembl chr 4:36,304,651...36,307,709
JBrowse link
G Rrm2 ribonucleotide reductase regulatory subunit M2 involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 6:41,339,858...41,346,774
Ensembl chr 6:41,340,557...41,346,773
JBrowse link
G Rtel1 regulator of telomere elongation helicase 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:168,427,247...168,465,349
Ensembl chr 3:168,419,579...168,465,348
JBrowse link
G Sde2 SDE2 telomere maintenance homolog involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr13:92,578,843...92,595,142
Ensembl chr13:92,578,874...92,595,140
JBrowse link
G Sin3a SIN3 transcription regulator family member A acts_upstream_of_or_within ISO MGI:3583656 (MGI:3582110|PMID:15998811) RGD PMID:15998811 MGI:3582110 NCBI chr 8:57,481,539...57,536,195
Ensembl chr 8:57,481,573...57,536,192
JBrowse link
G Slx4 SLX4 structure-specific endonuclease subunit involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:11,526,563...11,549,291
Ensembl chr10:11,528,424...11,549,295
JBrowse link
G Ssbp1 single stranded DNA binding protein 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 4:69,266,024...69,276,135
Ensembl chr 4:69,266,102...69,276,135
JBrowse link
G Ssrp1 structure specific recognition protein 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 3:70,124,371...70,134,481
Ensembl chr 3:70,118,655...70,134,482
JBrowse link
G Supt16h SPT16 homolog, facilitates chromatin remodeling subunit involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr15:24,867,697...24,904,818
Ensembl chr15:24,866,489...24,904,846
JBrowse link
G Tbrg1 transforming growth factor beta regulator 1 involved_in ISO (PMID:17110379) RGD PMID:17110379 NCBI chr 8:37,355,274...37,362,933
Ensembl chr 8:37,354,658...37,362,930
JBrowse link
G Ticrr TOPBP1-interacting checkpoint and replication regulator involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:133,597,618...133,639,513
Ensembl chr 1:133,597,716...133,639,523
JBrowse link
G Top1 DNA topoisomerase I involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
(MGI:2157189|PMID:11756244)
RGD PMID:11756244 PMID:21873635 MGI:2157189, RGD:13792537 NCBI chr 3:149,293,658...149,375,405
Ensembl chr 3:149,293,403...149,376,623
JBrowse link
G Top1mt DNA topoisomerase I mitochondrial involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:107,338,092...107,368,125
Ensembl chr 7:107,342,527...107,366,049
JBrowse link
G Trex1 three prime repair exonuclease 1 acts_upstream_of_or_within ISO (MGI:5014018|PMID:20511593) RGD PMID:20511593 MGI:5014018 NCBI chr 8:109,706,613...109,707,913
Ensembl chr 8:109,706,613...109,708,796
JBrowse link
G Upf1 UPF1, RNA helicase and ATPase involved_in ISO (PMID:16488880) RGD PMID:16488880 NCBI chr16:19,076,594...19,097,365
Ensembl chr16:19,076,322...19,096,568
JBrowse link
G Wrn WRN RecQ like helicase involved_in
acts_upstream_of_or_within
ISO (PMID:12882351)
UniProtKB:O88700 (MGI:5700122|PMID:26195664)
MGI:2156622 (MGI:1276992|PMID:9789047)
RGD PMID:9789047 PMID:12882351 PMID:26195664 MGI:1276992 MGI:5700122 NCBI chr16:58,763,517...58,898,604
Ensembl chr16:58,763,504...58,895,450
JBrowse link
G Wrnip1 WRN helicase interacting protein 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr17:31,621,410...31,641,659
Ensembl chr17:31,621,411...31,641,659
JBrowse link
DNA replication initiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccne1 cyclin E1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2675473 (MGI:2673102|PMID:12941272)
Ensembl
RGD
PMID:12941272 GO_REF:0000107 MGI:2673102 NCBI chr 1:90,781,947...90,791,188
Ensembl chr 1:90,781,949...90,791,101
JBrowse link
G Ccne2 cyclin E2 acts_upstream_of_or_within ISO MGI:2675474 (MGI:2673102|PMID:12941272) RGD PMID:12941272 MGI:2673102 NCBI chr 5:24,285,078...24,298,258
Ensembl chr 5:24,284,922...24,297,632
JBrowse link
G Cdc45 cell division cycle 45 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr11:82,185,427...82,210,630
Ensembl chr11:82,185,473...82,210,619
JBrowse link
G Cdc6 cell division cycle 6 involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr10:83,864,189...83,878,011
Ensembl chr10:83,864,638...83,878,011
JBrowse link
G Gmnc geminin coiled-coil domain containing involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr11:73,836,255...73,847,698
Ensembl chr11:73,814,533...73,847,328
JBrowse link
G Mcm10 minichromosome maintenance 10 replication initiation factor involved_in ISO
IBA
(PMID:32865517)
PMID:21873635
RGD PMID:32865517 PMID:21873635 RGD:13792537 NCBI chr17:73,263,788...73,288,346
Ensembl chr17:73,266,095...73,287,364
JBrowse link
G Mcm2 minichromosome maintenance complex component 2 involved_in ISO (PMID:16899510) RGD PMID:16899510 NCBI chr 4:121,346,434...121,360,962
Ensembl chr 4:121,346,434...121,360,847
JBrowse link
G Mcm5 minichromosome maintenance complex component 5 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:13,483,030...13,504,389
Ensembl chr19:13,483,066...13,504,389
JBrowse link
G Mcm6 minichromosome maintenance complex component 6 involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr13:39,826,745...39,851,937
Ensembl chr13:39,826,763...39,851,960
JBrowse link
G Mcm7 minichromosome maintenance complex component 7 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:17,042,207...17,049,470
Ensembl chr12:17,042,212...17,050,063
JBrowse link
G Noc3l NOC3-like DNA replication regulator involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:236,556,037...236,585,372
Ensembl chr 1:236,556,789...236,585,318
JBrowse link
G Orc1 origin recognition complex, subunit 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:123,324,273...123,348,375
Ensembl chr 5:123,324,315...123,348,375
JBrowse link
G Orc3 origin recognition complex, subunit 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:49,123,758...49,181,552
Ensembl chr 5:49,126,955...49,181,633
JBrowse link
G Orc4 origin recognition complex, subunit 4 involved_in ISO
IBA
ISS
(PMID:9353276)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:9353276 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 3:33,290,844...33,334,022
Ensembl chr 3:33,294,355...33,333,824
JBrowse link
G Orc5 origin recognition complex, subunit 5 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:12,548,007...12,612,611
Ensembl chr 4:12,548,007...12,612,568
JBrowse link
G Pola1 DNA polymerase alpha 1, catalytic subunit involved_in ISS
ISO
GO_REF:0000024
(MGI:3687659|PMID:10523676)
(PMID:2175912), (PMID:26975377)
UniProt
RGD
PMID:2175912 PMID:10523676 PMID:26975377 GO_REF:0000024 MGI:3687659 NCBI chr  X:58,034,617...58,348,612
Ensembl chr  X:58,034,619...58,348,536
JBrowse link
G Pola2 DNA polymerase alpha 2, accessory subunit involved_in ISO
IBA
IEA
(PMID:26975377)
PMID:21873635
GO_REF:0000107
(MGI:3687659|PMID:10523676)
RGD
Ensembl
PMID:10523676 PMID:26975377 PMID:21873635 GO_REF:0000107 MGI:3687659, RGD:13792537 NCBI chr 1:203,227,183...203,251,350
Ensembl chr 1:203,203,388...203,251,348
JBrowse link
G Prim1 DNA primase subunit 1 involved_in ISO (PMID:26975377)
(MGI:3687659|PMID:10523676)
RGD PMID:10523676 PMID:26975377 MGI:3687659 NCBI chr 7:446,342...462,526
Ensembl chr 7:431,805...462,526
JBrowse link
G Prim2 DNA primase subunit 2 involved_in ISO
IEA
(PMID:26975377)
GO_REF:0000117
(MGI:3687659|PMID:10523676)
RGD
UniProt
PMID:10523676 PMID:26975377 GO_REF:0000117 MGI:3687659 NCBI chr 9:35,692,376...35,904,521
Ensembl chr 9:35,692,376...35,903,030
JBrowse link
G Topbp1 DNA topoisomerase II binding protein 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:103,887,805...103,931,662
Ensembl chr 8:103,887,865...103,931,674
JBrowse link
DNA replication preinitiation complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdt1 chromatin licensing and DNA replication factor 1 involved_in IBA
ISO
PMID:21873635
(PMID:11125146)
RGD PMID:11125146 PMID:21873635 RGD:13792537 NCBI chr19:50,620,713...50,625,659
Ensembl chr19:50,620,713...50,625,659
JBrowse link
G Gmnn geminin, DNA replication inhibitor involved_in ISO (PMID:11125146) RGD PMID:11125146 NCBI chr17:40,301,771...40,310,054
Ensembl chr17:40,301,808...40,310,054
JBrowse link
DNA replication proofreading term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pold1 DNA polymerase delta 1, catalytic subunit involved_in
acts_upstream_of_or_within
IBA
ISO
IEA
PMID:21873635
MGI:2447628 (MGI:2445645|PMID:12429860)
GO_REF:0000107
RGD
Ensembl
PMID:12429860 PMID:21873635 GO_REF:0000107 MGI:2445645, RGD:13792537 NCBI chr 1:95,025,462...95,041,559
Ensembl chr 1:95,025,499...95,036,465
JBrowse link
G Pole DNA polymerase epsilon, catalytic subunit involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:46,345,420...46,393,984
Ensembl chr12:46,345,420...46,393,939
JBrowse link
DNA replication, Okazaki fragment processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dna2 DNA replication helicase/nuclease 2 involved_in ISO
ISS
IEA
(PMID:22570407)
GO_REF:0000024
GO_REF:0000104
RGD
UniProt
PMID:22570407 GO_REF:0000024 GO_REF:0000104 NCBI chr20:25,661,652...25,690,598
Ensembl chr20:25,662,055...25,716,319
JBrowse link
G Slc25a16 solute carrier family 25 member 16 involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr20:25,661,158...25,717,558
Ensembl chr20:25,662,055...25,716,319
JBrowse link
DNA replication, removal of RNA primer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dna2 DNA replication helicase/nuclease 2 involved_in IEA
ISO
GO_REF:0000107
(PMID:18995831)
Ensembl
RGD
PMID:18995831 GO_REF:0000107 NCBI chr20:25,661,652...25,690,598
Ensembl chr20:25,662,055...25,716,319
JBrowse link
G Fen1 flap structure-specific endonuclease 1 involved_in ISO (PMID:18995831) RGD PMID:18995831 NCBI chr 1:206,845,126...206,849,821
Ensembl chr 1:206,844,884...206,850,003
JBrowse link
G Rnaseh1 ribonuclease H1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:45,282,849...45,292,258
Ensembl chr 6:45,282,854...45,292,236
JBrowse link
G Rnaseh2a ribonuclease H2, subunit A involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:23,186,325...23,196,045
Ensembl chr19:23,186,383...23,196,041
JBrowse link
G Slc25a16 solute carrier family 25 member 16 involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr20:25,661,158...25,717,558
Ensembl chr20:25,662,055...25,716,319
JBrowse link
DNA replication, synthesis of RNA primer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Helb DNA helicase B involved_in ISO (PMID:12181327) RGD PMID:12181327 NCBI chr 7:55,588,510...55,615,979
Ensembl chr 7:55,588,798...55,615,585
JBrowse link
G Pola1 DNA polymerase alpha 1, catalytic subunit involved_in ISO
IEA
ISS
(PMID:2175912), (PMID:27019227), (PMID:8026492)
(MGI:6478526|PMID:8026492)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:2175912 PMID:8026492 PMID:27019227 GO_REF:0000024 GO_REF:0000107 MGI:6478526 NCBI chr  X:58,034,617...58,348,612
Ensembl chr  X:58,034,619...58,348,536
JBrowse link
G Pola2 DNA polymerase alpha 2, accessory subunit involved_in ISO
IEA
(PMID:8026492)
GO_REF:0000107
(MGI:6478526|PMID:8026492)
RGD
Ensembl
PMID:8026492 GO_REF:0000107 MGI:6478526 NCBI chr 1:203,227,183...203,251,350
Ensembl chr 1:203,203,388...203,251,348
JBrowse link
G Prim1 DNA primase subunit 1 involved_in IBA
ISO
PMID:21873635
(PMID:26975377), (PMID:8026492)
(MGI:6478526|PMID:8026492)
RGD PMID:8026492 PMID:26975377 PMID:21873635 MGI:6478526, RGD:13792537 NCBI chr 7:446,342...462,526
Ensembl chr 7:431,805...462,526
JBrowse link
G Prim2 DNA primase subunit 2 involved_in ISO
IEA
(PMID:8026492)
(MGI:6478526|PMID:8026492)
GO_REF:0000043
RGD