EFNB3 (ephrin B3) - Rat Genome Database
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Gene: EFNB3 (ephrin B3) Canis lupus familiaris
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Symbol: EFNB3
Name: ephrin B3
RGD ID: 12095127
Description: INVOLVED IN adult walking behavior (ortholog); axon choice point recognition (ortholog); negative regulation of axonogenesis (ortholog); PARTICIPATES IN ephrin - ephrin receptor bidirectional signaling axis; ASSOCIATED WITH Diamond-Blackfan anemia (ortholog); dyskeratosis congenita (ortholog); Li-Fraumeni syndrome (ortholog); FOUND IN glutamatergic synapse (ortholog); hippocampal mossy fiber to CA3 synapse (ortholog); integral component of postsynaptic density membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: ephrin-B3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl532,574,134 - 32,594,333 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1532,588,062 - 32,592,390 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:18054977  


Genomics

Comparative Map Data
EFNB3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl532,574,134 - 32,594,333 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1532,588,062 - 32,592,390 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
EFNB3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl177,705,202 - 7,711,372 (+)EnsemblGRCh38hg38GRCh38
GRCh38177,705,202 - 7,711,372 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37177,608,520 - 7,614,693 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36177,549,245 - 7,555,418 (+)NCBINCBI36hg18NCBI36
Build 34177,549,244 - 7,555,416NCBI
Celera177,634,880 - 7,641,053 (+)NCBI
Cytogenetic Map17p13.1NCBI
HuRef177,501,856 - 7,508,029 (+)NCBIHuRef
CHM1_1177,617,673 - 7,623,846 (+)NCBICHM1_1
Efnb3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391169,444,918 - 69,452,428 (-)NCBIGRCm39mm39
GRCm381169,554,092 - 69,561,150 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1169,554,092 - 69,560,205 (-)EnsemblGRCm38mm10GRCm38
MGSCv371169,367,594 - 69,373,739 (-)NCBIGRCm37mm9NCBIm37
MGSCv361169,370,320 - 69,376,373 (-)NCBImm8
Celera1176,517,045 - 76,523,190 (-)NCBICelera
Cytogenetic Map11B3NCBI
cM Map1142.8NCBI
Efnb3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01056,161,431 - 56,168,819 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1056,161,432 - 56,167,426 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01055,906,788 - 55,912,782 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41056,373,322 - 56,379,316 (-)NCBIRGSC3.4rn4RGSC3.4
Celera1053,428,729 - 53,434,697 (-)NCBICelera
Cytogenetic Map10q24NCBI
Efnb3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554679,217,796 - 9,224,940 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554679,217,796 - 9,225,223 (-)NCBIChiLan1.0ChiLan1.0
EFNB3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1177,724,982 - 7,731,270 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl177,724,983 - 7,731,270 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0177,737,297 - 7,743,732 (+)NCBIMhudiblu_PPA_v0panPan3
Efnb3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_004936595954,383 - 960,573 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EFNB3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1252,970,484 - 52,976,261 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11252,970,398 - 52,976,260 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21255,198,063 - 55,203,956 (-)NCBISscrofa10.2Sscrofa10.2susScr3
EFNB3
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1 Ensembl167,087,584 - 7,093,621 (+)Ensembl
ChlSab1.1167,087,116 - 7,093,457 (+)NCBI
Efnb3
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462478610,297,795 - 10,304,363 (+)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_005619991   ⟹   XP_005620048
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1532,588,062 - 32,592,390 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005620048 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005620048   ⟸   XM_005619991
- Sequence:
Protein Domains
Ephrin RBD   WD_REPEATS_REGION


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000031192 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSCAFP00000031891 UniProtKB/TrEMBL
  ENSCAFP00000035853 ENTREZGENE, UniProtKB/TrEMBL
  ENSCAFP00000036919 UniProtKB/TrEMBL
  ENSCAFP00000053849 UniProtKB/TrEMBL
  ENSCAFP00000057757 UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000036506 UniProtKB/TrEMBL
  ENSCAFT00000042891 ENTREZGENE, UniProtKB/TrEMBL
  ENSCAFT00000045758 UniProtKB/TrEMBL
  ENSCAFT00000069246 UniProtKB/TrEMBL
  ENSCAFT00000073485 UniProtKB/TrEMBL
Gene3D-CATH 2.130.10.10 UniProtKB/TrEMBL
  2.60.40.420 UniProtKB/TrEMBL
InterPro Cupredoxin UniProtKB/TrEMBL
  Ephrin UniProtKB/TrEMBL
  Ephrin_CS UniProtKB/TrEMBL
  Ephrin_RBD UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom_sf UniProtKB/TrEMBL
  WD40_repeat UniProtKB/TrEMBL
  WD40_repeat_dom UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/TrEMBL
NCBI Gene EFNB3 ENTREZGENE
PANTHER PTHR11304 UniProtKB/TrEMBL
Pfam Ephrin UniProtKB/TrEMBL
  WD40 UniProtKB/TrEMBL
PRINTS EPHRIN UniProtKB/TrEMBL
PROSITE EPHRIN_RBD_1 UniProtKB/TrEMBL
  EPHRIN_RBD_2 UniProtKB/TrEMBL
  WD_REPEATS_2 UniProtKB/TrEMBL
  WD_REPEATS_REGION UniProtKB/TrEMBL
SMART WD40 UniProtKB/TrEMBL
Superfamily-SCOP SSF49503 UniProtKB/TrEMBL
  SSF50978 UniProtKB/TrEMBL
UniGene Cfa.47217 ENTREZGENE
UniProt A0A5F4CM17_CANLF UniProtKB/TrEMBL
  A0A5F4CWC6_CANLF UniProtKB/TrEMBL
  B0LDT2_CANLF UniProtKB/TrEMBL
  E2QTU8_CANLF UniProtKB/TrEMBL
  J9JHC4_CANLF UniProtKB/TrEMBL
  J9NUT0_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:40230 ENTREZGENE