SHLD2 (shieldin complex subunit 2) - Rat Genome Database

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Gene: SHLD2 (shieldin complex subunit 2) Canis lupus familiaris
Analyze
Symbol: SHLD2
Name: shieldin complex subunit 2
RGD ID: 12173369
Description: INVOLVED IN negative regulation of double-strand break repair via homologous recombination (ortholog); positive regulation of double-strand break repair via nonhomologous end joining (ortholog); positive regulation of isotype switching (ortholog); ASSOCIATED WITH diabetes mellitus (ortholog); familial hyperinsulinemic hypoglycemia 6 (ortholog); genetic disease (ortholog); FOUND IN actin cytoskeleton (ortholog); chromosome (ortholog); nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: FAM35A; family with sequence similarity 35 member A
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1434,665,111 - 34,740,645 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl434,688,245 - 34,763,705 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha434,654,858 - 34,732,283 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0435,023,800 - 35,101,252 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1434,869,031 - 34,946,347 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0435,038,013 - 35,115,455 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0435,544,430 - 35,621,946 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
SHLD2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1434,665,111 - 34,740,645 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl434,688,245 - 34,763,705 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha434,654,858 - 34,732,283 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0435,023,800 - 35,101,252 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1434,869,031 - 34,946,347 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0435,038,013 - 35,115,455 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0435,544,430 - 35,621,946 (+)NCBIUU_Cfam_GSD_1.0
SHLD2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381087,094,473 - 87,191,465 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1087,094,161 - 87,191,465 (+)EnsemblGRCh38hg38GRCh38
GRCh371088,854,963 - 88,951,222 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361088,844,933 - 88,941,202 (+)NCBINCBI36Build 36hg18NCBI36
Build 341088,844,932 - 88,941,200NCBI
Cytogenetic Map10q23.2NCBI
HuRef1082,778,394 - 82,789,042 (+)NCBIHuRef
CHM1_11089,136,724 - 89,232,977 (+)NCBICHM1_1
T2T-CHM13v2.01087,978,839 - 88,075,088 (+)NCBIT2T-CHM13v2.0
Shld2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391433,958,905 - 34,032,528 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1433,958,990 - 34,032,450 (-)EnsemblGRCm39 Ensembl
GRCm381434,236,948 - 34,310,651 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1434,237,033 - 34,310,493 (-)EnsemblGRCm38mm10GRCm38
MGSCv371435,050,219 - 35,123,689 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361433,066,133 - 33,139,458 (-)NCBIMGSCv36mm8
Celera1430,499,098 - 30,576,001 (-)NCBICelera
Cytogenetic Map14BNCBI
cM Map1420.8NCBI
Shld2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8169,554,921 - 9,646,186 (-)NCBIGRCr8
mRatBN7.2169,544,940 - 9,640,323 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl169,548,660 - 9,639,965 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx169,562,132 - 9,660,662 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01610,706,838 - 10,805,376 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0169,557,197 - 9,655,744 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01610,570,307 - 10,661,528 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1610,570,314 - 10,661,528 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0168,888,929 - 8,979,969 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4169,868,212 - 9,965,225 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera165,576,833 - 5,667,636 (+)NCBICelera
Cytogenetic Map16p15NCBI
Shld2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555106,075,510 - 6,114,898 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555106,021,477 - 6,114,745 (+)NCBIChiLan1.0ChiLan1.0
LOC103784056
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2859,311,152 - 59,353,528 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11059,316,469 - 59,359,047 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01043,572,547 - 43,624,201 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11487,923,049 - 87,928,101 (+)NCBIpanpan1.1PanPan1.1panPan2
Shld2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721343,682,657 - 43,768,173 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366015,315,261 - 5,396,301 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366015,315,297 - 5,400,752 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SHLD2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1488,005,611 - 88,121,352 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11488,005,599 - 88,121,155 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21495,538,054 - 95,600,923 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SHLD2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1944,565,105 - 44,652,926 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl944,564,792 - 44,605,562 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660484,377,310 - 4,464,557 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Shld2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462484120,431 - 133,163 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462484121,077 - 133,155 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in SHLD2
809 total Variants

Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
6 5 5 23 22 16 6 6 6 6 33 22 12 14 10

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_014112948 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_014112949 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_014112950 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_014112951 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_014112953 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_014112954 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_014112956 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_014112957 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_014112958 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_014112960 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_014112961 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022417618 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022417619 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022417620 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022417621 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022417622 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038473467 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038473468 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038473469 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038473470 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038473471 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038473472 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038473473 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038473474 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038473475 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038473476 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038473478 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038493105 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038534535 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038534536 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038534537 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038534538 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038534539 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038534540 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038534541 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038534542 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038534543 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038534544 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038534545 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038598858 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038598859 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038598860 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038598861 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038598862 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038598863 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038598864 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038598865 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038598866 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038598867 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038598868 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038663136 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038663137 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038663138 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038663139 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038663140 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038663141 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038663142 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038663143 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038663144 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038663145 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038663146 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000051 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000088 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000355 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSCAFT00000025540   ⟹   ENSCAFP00000023714
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl434,708,239 - 34,763,705 (+)Ensembl
Ensembl Acc Id: ENSCAFT00000074134   ⟹   ENSCAFP00000046083
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl434,688,245 - 34,740,599 (+)Ensembl
Ensembl Acc Id: ENSCAFT00000092098   ⟹   ENSCAFP00000051714
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl434,688,245 - 34,740,599 (+)Ensembl
RefSeq Acc Id: XM_038473467   ⟹   XP_038329395
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1434,869,031 - 34,946,347 (+)NCBI
RefSeq Acc Id: XM_038473468   ⟹   XP_038329396
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1434,870,264 - 34,946,347 (+)NCBI
RefSeq Acc Id: XM_038473469   ⟹   XP_038329397
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1434,870,264 - 34,946,347 (+)NCBI
RefSeq Acc Id: XM_038473470   ⟹   XP_038329398
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1434,869,031 - 34,946,347 (+)NCBI
RefSeq Acc Id: XM_038473471   ⟹   XP_038329399
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1434,889,336 - 34,946,347 (+)NCBI
RefSeq Acc Id: XM_038473472   ⟹   XP_038329400
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1434,907,634 - 34,946,347 (+)NCBI
RefSeq Acc Id: XM_038473473   ⟹   XP_038329401
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1434,869,031 - 34,946,347 (+)NCBI
RefSeq Acc Id: XM_038473474   ⟹   XP_038329402
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1434,869,031 - 34,946,347 (+)NCBI
RefSeq Acc Id: XM_038473475   ⟹   XP_038329403
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1434,869,031 - 34,946,347 (+)NCBI
RefSeq Acc Id: XM_038473476   ⟹   XP_038329404
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1434,869,031 - 34,946,347 (+)NCBI
RefSeq Acc Id: XM_038473478   ⟹   XP_038329406
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1434,937,652 - 34,946,347 (+)NCBI
RefSeq Acc Id: XM_038493105   ⟹   XP_038349033
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha434,654,858 - 34,732,283 (+)NCBI
RefSeq Acc Id: XM_038534535   ⟹   XP_038390463
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0435,544,430 - 35,621,946 (+)NCBI
RefSeq Acc Id: XM_038534536   ⟹   XP_038390464
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0435,545,995 - 35,621,946 (+)NCBI
RefSeq Acc Id: XM_038534537   ⟹   XP_038390465
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0435,545,995 - 35,621,946 (+)NCBI
RefSeq Acc Id: XM_038534538   ⟹   XP_038390466
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0435,544,430 - 35,621,946 (+)NCBI
RefSeq Acc Id: XM_038534539   ⟹   XP_038390467
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0435,565,136 - 35,621,946 (+)NCBI
RefSeq Acc Id: XM_038534540   ⟹   XP_038390468
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0435,583,183 - 35,621,946 (+)NCBI
RefSeq Acc Id: XM_038534541   ⟹   XP_038390469
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0435,544,430 - 35,621,946 (+)NCBI
RefSeq Acc Id: XM_038534542   ⟹   XP_038390470
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0435,544,430 - 35,621,946 (+)NCBI
RefSeq Acc Id: XM_038534543   ⟹   XP_038390471
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0435,544,430 - 35,621,946 (+)NCBI
RefSeq Acc Id: XM_038534544   ⟹   XP_038390472
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0435,544,430 - 35,621,946 (+)NCBI
RefSeq Acc Id: XM_038534545   ⟹   XP_038390473
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0435,613,238 - 35,621,946 (+)NCBI
RefSeq Acc Id: XM_038598858   ⟹   XP_038454786
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0435,038,013 - 35,115,455 (+)NCBI
RefSeq Acc Id: XM_038598859   ⟹   XP_038454787
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0435,039,572 - 35,115,455 (+)NCBI
RefSeq Acc Id: XM_038598860   ⟹   XP_038454788
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0435,039,572 - 35,115,455 (+)NCBI
RefSeq Acc Id: XM_038598861   ⟹   XP_038454789
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0435,038,013 - 35,115,455 (+)NCBI
RefSeq Acc Id: XM_038598862   ⟹   XP_038454790
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0435,058,651 - 35,115,455 (+)NCBI
RefSeq Acc Id: XM_038598863   ⟹   XP_038454791
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0435,076,694 - 35,115,455 (+)NCBI
RefSeq Acc Id: XM_038598864   ⟹   XP_038454792
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0435,038,013 - 35,115,455 (+)NCBI
RefSeq Acc Id: XM_038598865   ⟹   XP_038454793
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0435,038,013 - 35,115,455 (+)NCBI
RefSeq Acc Id: XM_038598866   ⟹   XP_038454794
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0435,038,013 - 35,115,455 (+)NCBI
RefSeq Acc Id: XM_038598867   ⟹   XP_038454795
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0435,038,013 - 35,115,455 (+)NCBI
RefSeq Acc Id: XM_038598868   ⟹   XP_038454796
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0435,106,748 - 35,115,455 (+)NCBI
RefSeq Acc Id: XM_038663136   ⟹   XP_038519064
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0435,023,800 - 35,101,252 (+)NCBI
RefSeq Acc Id: XM_038663137   ⟹   XP_038519065
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0435,025,041 - 35,101,252 (+)NCBI
RefSeq Acc Id: XM_038663138   ⟹   XP_038519066
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0435,025,041 - 35,101,252 (+)NCBI
RefSeq Acc Id: XM_038663139   ⟹   XP_038519067
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0435,023,800 - 35,101,252 (+)NCBI
RefSeq Acc Id: XM_038663140   ⟹   XP_038519068
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0435,044,140 - 35,101,252 (+)NCBI
RefSeq Acc Id: XM_038663141   ⟹   XP_038519069
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0435,062,460 - 35,101,252 (+)NCBI
RefSeq Acc Id: XM_038663142   ⟹   XP_038519070
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0435,023,800 - 35,101,252 (+)NCBI
RefSeq Acc Id: XM_038663143   ⟹   XP_038519071
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0435,023,800 - 35,101,252 (+)NCBI
RefSeq Acc Id: XM_038663144   ⟹   XP_038519072
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0435,023,800 - 35,101,252 (+)NCBI
RefSeq Acc Id: XM_038663145   ⟹   XP_038519073
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0435,023,800 - 35,101,252 (+)NCBI
RefSeq Acc Id: XM_038663146   ⟹   XP_038519074
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0435,094,642 - 35,101,252 (+)NCBI
Protein Sequences
Protein RefSeqs XP_038329395 (Get FASTA)   NCBI Sequence Viewer  
  XP_038329396 (Get FASTA)   NCBI Sequence Viewer  
  XP_038329397 (Get FASTA)   NCBI Sequence Viewer  
  XP_038329398 (Get FASTA)   NCBI Sequence Viewer  
  XP_038329399 (Get FASTA)   NCBI Sequence Viewer  
  XP_038329400 (Get FASTA)   NCBI Sequence Viewer  
  XP_038329401 (Get FASTA)   NCBI Sequence Viewer  
  XP_038329402 (Get FASTA)   NCBI Sequence Viewer  
  XP_038329403 (Get FASTA)   NCBI Sequence Viewer  
  XP_038329404 (Get FASTA)   NCBI Sequence Viewer  
  XP_038329406 (Get FASTA)   NCBI Sequence Viewer  
  XP_038349033 (Get FASTA)   NCBI Sequence Viewer  
  XP_038390463 (Get FASTA)   NCBI Sequence Viewer  
  XP_038390464 (Get FASTA)   NCBI Sequence Viewer  
  XP_038390465 (Get FASTA)   NCBI Sequence Viewer  
  XP_038390466 (Get FASTA)   NCBI Sequence Viewer  
  XP_038390467 (Get FASTA)   NCBI Sequence Viewer  
  XP_038390468 (Get FASTA)   NCBI Sequence Viewer  
  XP_038390469 (Get FASTA)   NCBI Sequence Viewer  
  XP_038390470 (Get FASTA)   NCBI Sequence Viewer  
  XP_038390471 (Get FASTA)   NCBI Sequence Viewer  
  XP_038390472 (Get FASTA)   NCBI Sequence Viewer  
  XP_038390473 (Get FASTA)   NCBI Sequence Viewer  
  XP_038454786 (Get FASTA)   NCBI Sequence Viewer  
  XP_038454787 (Get FASTA)   NCBI Sequence Viewer  
  XP_038454788 (Get FASTA)   NCBI Sequence Viewer  
  XP_038454789 (Get FASTA)   NCBI Sequence Viewer  
  XP_038454790 (Get FASTA)   NCBI Sequence Viewer  
  XP_038454791 (Get FASTA)   NCBI Sequence Viewer  
  XP_038454792 (Get FASTA)   NCBI Sequence Viewer  
  XP_038454793 (Get FASTA)   NCBI Sequence Viewer  
  XP_038454794 (Get FASTA)   NCBI Sequence Viewer  
  XP_038454795 (Get FASTA)   NCBI Sequence Viewer  
  XP_038454796 (Get FASTA)   NCBI Sequence Viewer  
  XP_038519064 (Get FASTA)   NCBI Sequence Viewer  
  XP_038519065 (Get FASTA)   NCBI Sequence Viewer  
  XP_038519066 (Get FASTA)   NCBI Sequence Viewer  
  XP_038519067 (Get FASTA)   NCBI Sequence Viewer  
  XP_038519068 (Get FASTA)   NCBI Sequence Viewer  
  XP_038519069 (Get FASTA)   NCBI Sequence Viewer  
  XP_038519070 (Get FASTA)   NCBI Sequence Viewer  
  XP_038519071 (Get FASTA)   NCBI Sequence Viewer  
  XP_038519072 (Get FASTA)   NCBI Sequence Viewer  
  XP_038519073 (Get FASTA)   NCBI Sequence Viewer  
  XP_038519074 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCAFP00000023714.5
  ENSCAFP00000046083.2
  ENSCAFP00000051714.2
  ENSCAFP00030000821.1
  ENSCAFP00030000828.1
  ENSCAFP00040017658.1
  ENSCAFP00040017719.1
  ENSCAFP00845010019
  ENSCAFP00845010019.1
  ENSCAFP00845010048
  ENSCAFP00845010048.1
  ENSCAFP00845010098.1
Ensembl Acc Id: ENSCAFP00000046083   ⟸   ENSCAFT00000074134
Ensembl Acc Id: ENSCAFP00000023714   ⟸   ENSCAFT00000025540
Ensembl Acc Id: ENSCAFP00000051714   ⟸   ENSCAFT00000092098
RefSeq Acc Id: XP_038329398   ⟸   XM_038473470
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038329395   ⟸   XM_038473467
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038329402   ⟸   XM_038473474
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038329403   ⟸   XM_038473475
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038329404   ⟸   XM_038473476
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038329401   ⟸   XM_038473473
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038329396   ⟸   XM_038473468
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038329397   ⟸   XM_038473469
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038329399   ⟸   XM_038473471
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038329400   ⟸   XM_038473472
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038329406   ⟸   XM_038473478
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038454789   ⟸   XM_038598861
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038454786   ⟸   XM_038598858
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038454793   ⟸   XM_038598865
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038454794   ⟸   XM_038598866
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038454795   ⟸   XM_038598867
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038454792   ⟸   XM_038598864
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038454787   ⟸   XM_038598859
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038454788   ⟸   XM_038598860
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038454790   ⟸   XM_038598862
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038454791   ⟸   XM_038598863
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038454796   ⟸   XM_038598868
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038519067   ⟸   XM_038663139
- Peptide Label: isoform X1
- UniProtKB: A0A8I3MUH7 (UniProtKB/TrEMBL),   A0A8C0S8Z7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038519064   ⟸   XM_038663136
- Peptide Label: isoform X1
- UniProtKB: A0A8I3MUH7 (UniProtKB/TrEMBL),   A0A8C0S8Z7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038519071   ⟸   XM_038663143
- Peptide Label: isoform X2
- UniProtKB: A0A8C0S8Z7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038519072   ⟸   XM_038663144
- Peptide Label: isoform X3
- UniProtKB: A0A8I3MWE6 (UniProtKB/TrEMBL),   A0A8C0S8K1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038519073   ⟸   XM_038663145
- Peptide Label: isoform X4
- UniProtKB: A0A8C0S8K1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038519070   ⟸   XM_038663142
- Peptide Label: isoform X1
- UniProtKB: A0A8I3MUH7 (UniProtKB/TrEMBL),   A0A8C0S8Z7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038519065   ⟸   XM_038663137
- Peptide Label: isoform X1
- UniProtKB: A0A8I3MUH7 (UniProtKB/TrEMBL),   A0A8C0S8Z7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038519066   ⟸   XM_038663138
- Peptide Label: isoform X1
- UniProtKB: A0A8I3MUH7 (UniProtKB/TrEMBL),   A0A8C0S8Z7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038519068   ⟸   XM_038663140
- Peptide Label: isoform X1
- UniProtKB: A0A8I3MUH7 (UniProtKB/TrEMBL),   A0A8C0S8Z7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038519069   ⟸   XM_038663141
- Peptide Label: isoform X1
- UniProtKB: A0A8I3MUH7 (UniProtKB/TrEMBL),   A0A8C0S8Z7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038519074   ⟸   XM_038663146
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038349033   ⟸   XM_038493105
- Peptide Label: isoform X3
- UniProtKB: A0A8C0LS17 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038390466   ⟸   XM_038534538
- Peptide Label: isoform X1
- UniProtKB: A0A8C0LS05 (UniProtKB/TrEMBL),   A0A8C0QZX4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038390463   ⟸   XM_038534535
- Peptide Label: isoform X1
- UniProtKB: A0A8C0LS05 (UniProtKB/TrEMBL),   A0A8C0QZX4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038390470   ⟸   XM_038534542
- Peptide Label: isoform X2
- UniProtKB: A0A8C0LS05 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038390471   ⟸   XM_038534543
- Peptide Label: isoform X3
- UniProtKB: A0A8C0LS17 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038390472   ⟸   XM_038534544
- Peptide Label: isoform X4
- UniProtKB: A0A8C0LS17 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038390469   ⟸   XM_038534541
- Peptide Label: isoform X1
- UniProtKB: A0A8C0LS05 (UniProtKB/TrEMBL),   A0A8C0QZX4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038390464   ⟸   XM_038534536
- Peptide Label: isoform X1
- UniProtKB: A0A8C0LS05 (UniProtKB/TrEMBL),   A0A8C0QZX4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038390465   ⟸   XM_038534537
- Peptide Label: isoform X1
- UniProtKB: A0A8C0LS05 (UniProtKB/TrEMBL),   A0A8C0QZX4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038390467   ⟸   XM_038534539
- Peptide Label: isoform X1
- UniProtKB: A0A8C0LS05 (UniProtKB/TrEMBL),   A0A8C0QZX4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038390468   ⟸   XM_038534540
- Peptide Label: isoform X1
- UniProtKB: A0A8C0LS05 (UniProtKB/TrEMBL),   A0A8C0QZX4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038390473   ⟸   XM_038534545
- Peptide Label: isoform X5
Protein Domains
Shieldin complex subunit 2 C-terminal   Shieldin complex subunit 2 first OB fold   Shieldin complex subunit 2 second OB fold


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000016097 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030000566 UniProtKB/TrEMBL
  ENSCAFG00040011017 UniProtKB/TrEMBL
  ENSCAFG00845007274 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000025540.5 UniProtKB/TrEMBL
  ENSCAFT00000074134.2 UniProtKB/TrEMBL
  ENSCAFT00000092098.2 UniProtKB/TrEMBL
  ENSCAFT00030000949.1 UniProtKB/TrEMBL
  ENSCAFT00030000956.1 UniProtKB/TrEMBL
  ENSCAFT00040020352.1 UniProtKB/TrEMBL
  ENSCAFT00040020422.1 UniProtKB/TrEMBL
  ENSCAFT00845012856 ENTREZGENE
  ENSCAFT00845012856.1 UniProtKB/TrEMBL
  ENSCAFT00845012893 ENTREZGENE
  ENSCAFT00845012893.1 UniProtKB/TrEMBL
  ENSCAFT00845012955.1 UniProtKB/TrEMBL
InterPro FAM35A UniProtKB/TrEMBL
  FAM35A_C UniProtKB/TrEMBL
  SHLD2_OB1 UniProtKB/TrEMBL
  SHLD2_OB2 UniProtKB/TrEMBL
NCBI Gene FAM35A ENTREZGENE
PANTHER PTHR14495 UniProtKB/TrEMBL
  SHIELDIN COMPLEX SUBUNIT 2 UniProtKB/TrEMBL
Pfam FAM35_C UniProtKB/TrEMBL
  SHLD2_OB1 UniProtKB/TrEMBL
  SHLD2_OB2 UniProtKB/TrEMBL
UniProt A0A8C0LS05 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0LS17 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0QZX4 ENTREZGENE
  A0A8C0S8K1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0S8Z7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3MUH7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3MWE6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3NH26_CANLF UniProtKB/TrEMBL
  A0A8P0P1F6_CANLF UniProtKB/TrEMBL
  A0A8P0SKH0_CANLF UniProtKB/TrEMBL
  A0A8P0SZ42_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:40677 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-05-01 SHLD2  shieldin complex subunit 2  FAM35A  family with sequence similarity 35 member A  Symbol and/or name change 5135510 APPROVED