Trabd2b (TraB domain containing 2B) - Rat Genome Database

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Gene: Trabd2b (TraB domain containing 2B) Rattus norvegicus
Analyze
Symbol: Trabd2b
Name: TraB domain containing 2B
RGD ID: 1586386
Description: Predicted to enable Wnt-protein binding activity and metalloendopeptidase activity. Predicted to be involved in several processes, including negative regulation of Wnt signaling pathway; positive regulation of protein oxidation; and positive regulation of protein-containing complex assembly. Predicted to be active in organelle membrane and plasma membrane. Orthologous to human TRABD2B (TraB domain containing 2B); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: hypothetical LOC298409; LOC298409; LOC689914; metalloprotease TIKI2; RGD1564942; similar to C05G5.5
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85133,178,014 - 133,395,740 (+)NCBIGRCr8
mRatBN7.25127,941,198 - 128,158,946 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5127,941,114 - 128,143,747 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.05133,220,986 - 133,437,151 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5133,221,139 - 133,420,644 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05137,016,915 - 137,231,017 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45134,778,167 - 134,978,965 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera5126,596,412 - 126,812,016 (+)NCBICelera
Cytogenetic Map5q35NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
organelle membrane  (IBA,ISO)
plasma membrane  (IBA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:22726442   PMID:23376485  


Genomics

Comparative Map Data
Trabd2b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85133,178,014 - 133,395,740 (+)NCBIGRCr8
mRatBN7.25127,941,198 - 128,158,946 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5127,941,114 - 128,143,747 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.05133,220,986 - 133,437,151 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5133,221,139 - 133,420,644 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05137,016,915 - 137,231,017 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45134,778,167 - 134,978,965 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera5126,596,412 - 126,812,016 (+)NCBICelera
Cytogenetic Map5q35NCBI
TRABD2B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38147,760,528 - 47,997,385 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl147,760,528 - 47,997,385 (-)EnsemblGRCh38hg38GRCh38
GRCh37148,226,200 - 48,463,057 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36148,003,896 - 48,235,839 (-)NCBINCBI36Build 36hg18NCBI36
Celera146,513,002 - 46,749,292 (-)NCBICelera
Cytogenetic Map1p33NCBI
HuRef146,343,095 - 46,579,167 (-)NCBIHuRef
CHM1_1148,343,333 - 48,579,625 (-)NCBICHM1_1
T2T-CHM13v2.0147,639,427 - 47,876,248 (-)NCBIT2T-CHM13v2.0
Trabd2b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394114,263,394 - 114,472,295 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4114,263,921 - 114,472,295 (+)EnsemblGRCm39 Ensembl
GRCm384114,406,682 - 114,615,098 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4114,406,724 - 114,615,098 (+)EnsemblGRCm38mm10GRCm38
MGSCv374114,079,329 - 114,287,703 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364113,904,620 - 114,108,672 (+)NCBIMGSCv36mm8
Celera4113,154,874 - 113,362,877 (+)NCBICelera
Cytogenetic Map4D1NCBI
cM Map451.84NCBI
Trabd2b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546410,612,030 - 10,812,585 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495546410,612,515 - 10,817,725 (+)NCBIChiLan1.0ChiLan1.0
TRABD2B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21178,819,424 - 179,055,861 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11177,960,850 - 178,197,307 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0147,055,618 - 47,292,055 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1148,566,390 - 48,800,589 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl148,571,772 - 48,799,960 (-)Ensemblpanpan1.1panPan2
TRABD2B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11512,778,537 - 12,987,316 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1512,771,859 - 12,996,357 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1512,927,212 - 13,140,334 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01512,923,781 - 13,136,795 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11512,726,485 - 12,936,858 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01512,793,616 - 13,007,008 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01512,863,380 - 13,074,058 (+)NCBIUU_Cfam_GSD_1.0
Trabd2b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505862,706,640 - 62,927,944 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647428,531,931 - 28,752,736 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647428,565,563 - 28,752,370 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TRABD2B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6163,624,072 - 163,837,863 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16163,624,078 - 163,836,829 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26151,332,988 - 151,389,456 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TRABD2B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12084,932,091 - 85,162,560 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2084,932,721 - 85,157,167 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603331,928,461 - 32,158,401 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Trabd2b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248594,849,877 - 5,063,994 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248594,849,319 - 5,121,008 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Trabd2b
946 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:83
Count of miRNA genes:72
Interacting mature miRNAs:80
Transcripts:ENSRNOT00000047522
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70212Niddm25Non-insulin dependent diabetes mellitus QTL 253.54blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)51131345958Rat
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)52138965166875058Rat
2290448Scl54Serum cholesterol level QTL 542.93blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)531663789131345958Rat
1641912Alcrsp18Alcohol response QTL 18response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)535189153141643988Rat
1549845Scl44Serum cholesterol level QTL 446blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)540128307148607290Rat
1331801Rf33Renal function QTL 334.149kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)543726656129132602Rat
1578766Tcas11Tongue tumor susceptibility QTL 114.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)546711509161317411Rat
1576312Emca8Estrogen-induced mammary cancer QTL 84.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)550328551141643988Rat
70189Mcs5Mammary carcinoma susceptibility QTL 510.51mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)555805606132207589Rat
1358895Bp254Blood pressure QTL 2543.60.0003arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)558829236128034027Rat
61426Scl2Serum cholesterol level QTL 27.30.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)559793399143070159Rat
61393Bp7Blood pressure QTL 74.50.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)560293434161481680Rat
1354598Srn6Serum renin concentration QTL 63.8blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)569540295151018848Rat
1302790Scl20Serum cholesterol level QTL 206.40.0001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)582394392166664054Rat
1298086Bp156Blood pressure QTL 156arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)584132602129132602Rat
7411601Foco12Food consumption QTL 1219.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)587468046132468046Rat
7411564Bw135Body weight QTL 1350.001body mass (VT:0001259)body weight gain (CMO:0000420)587468046132468046Rat
7411582Foco3Food consumption QTL 37.50.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)587468046132468046Rat
6903316Bw113Body weight QTL 11320.0103body mass (VT:0001259)body weight (CMO:0000012)587765973132765973Rat
1358889Bp261Blood pressure QTL 2612.86arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)590067849128034027Rat
1358909Kidm25Kidney mass QTL 251.87kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)590067849128034027Rat
631527Tls1T-lymphoma susceptibility QTL 100.001thymus integrity trait (VT:0010555)post-insult time to onset of T-cell lymphoma (CMO:0001907)590450144135450144Rat
61452Ciaa5CIA Autoantibody QTL 53.5blood autoantibody amount (VT:0003725)calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)594858972143070159Rat
1331796Thshl2Thyroid stimulating hormone level QTL 22.3blood thyroid-stimulating hormone amount (VT:0005119)serum thyroid stimulating hormone level (CMO:0001248)597059760147465714Rat
2317753Glom24Glomerulus QTL 243.1kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)597570330136479578Rat
1358187Emca1Estrogen-induced mammary cancer QTL 14.4mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)599216724148607142Rat
1578673Bmd13Bone mineral density QTL 134.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)5103689353148689353Rat
2317056Wbc3White blood cell count QTL 32.510.01leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)5105999803150999803Rat
7207488Bss110Bone structure and strength QTL 18.4femur strength trait (VT:0010010)femur stiffness (CMO:0001674)5106906205151906205Rat
7207491Bss112Bone structure and strength QTL 1127femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)5106906205151906205Rat
7207481Bss106Bone structure and strength QTL 1067.9femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)5106906205151906205Rat
7207486Bss109Bone structure and strength QTL 109femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)5106906205151906205Rat
1549838Bss4Bone structure and strength QTL 49.2femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)5106906205151906205Rat
1298089Scl14Serum cholesterol level QTL 145.80.0004blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)5108845856153845856Rat
1598847Cm62Cardiac mass QTL 623.4heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)5108845856153845856Rat
8657050Bw146Body weight QTL 14619.840.001body mass (VT:0001259)body weight gain (CMO:0000420)5108938288153938288Rat
8694441Bw169Body weight QTL 16917.610.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)5111416838156416838Rat
8694198Abfw3Abdominal fat weight QTL 316.130.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)5111416838156416838Rat
8694389Bw160Body weight QTL 1606.170.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)5111416838156416838Rat
8552960Pigfal15Plasma insulin-like growth factor 1 level QTL 15blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5111416838156416838Rat
1582230Bw78Body weight QTL 783.20.0016epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)5119085612128034027Rat
1581510Cm54Cardiac mass QTL 543.40.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)5120740824143608494Rat
2293642Bss37Bone structure and strength QTL 374.640.0001femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)5120740824151018848Rat
1641920Colcs1Colorectal carcinoma susceptibility QTL 12.990.0055intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)5121846814166846814Rat
7394710Emca12Estrogen-induced mammary cancer QTL 12mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)5124160767133749643Rat
10053720Scort26Serum corticosterone level QTL 262.060.0147blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)5124965598166875058Rat
1300122Wbc1White blood cell count QTL 12.75leukocyte quantity (VT:0000217)total white blood cell count (CMO:0000365)5125392826139989768Rat
724525Bp147Blood pressure QTL 1474.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5126424772166875058Rat
1598819Bp292Blood pressure QTL 2924.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5127798274166875058Rat
1598861Cm64Cardiac mass QTL 642.9heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)5127798274166875058Rat
1581505Rf54Renal function QTL 54kidney physiology trait (VT:0002136)kidney 20-HETE level (CMO:0001854)5128033842133011550Rat

Markers in Region
D5Rat108  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25128,033,842 - 128,034,027 (+)MAPPERmRatBN7.2
Rnor_6.05133,313,668 - 133,313,852NCBIRnor6.0
Rnor_5.05137,107,818 - 137,108,002UniSTSRnor5.0
RGSC_v3.45134,871,897 - 134,872,385RGDRGSC3.4
RGSC_v3.45134,871,902 - 134,872,086UniSTSRGSC3.4
RGSC_v3.15134,877,128 - 134,877,312RGD
Celera5126,688,474 - 126,688,658UniSTS
RH 3.4 Map5828.8UniSTS
RH 3.4 Map5828.8RGD
RH 2.0 Map5776.9RGD
SHRSP x BN Map566.0999RGD
Cytogenetic Map5q35UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 12 1 35 11 7
Low 1 31 26 10 18 10 6 7 74 23 4 6
Below cutoff 2 27 27 27 2 4 7 2

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_001072500 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_003754079 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006225458 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006225460 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006225462 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006225463 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006238601 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006238603 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006238605 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006238606 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008763972 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008763973 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008763974 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008776041 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008776042 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008776043 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593793 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593794 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603073 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603074 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288595 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288596 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288597 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288598 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000047522   ⟹   ENSRNOP00000049840
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5127,941,114 - 128,143,747 (+)Ensembl
Rnor_6.0 Ensembl5133,221,139 - 133,420,644 (+)Ensembl
RefSeq Acc Id: XM_001072500   ⟹   XP_001072500
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85133,178,032 - 133,382,158 (+)NCBI
mRatBN7.25127,941,217 - 128,145,361 (+)NCBI
Rnor_6.05133,220,986 - 133,425,467 (+)NCBI
Rnor_5.05137,016,915 - 137,231,017 (+)NCBI
RGSC_v3.45134,778,167 - 134,978,965 (+)RGD
Sequence:
RefSeq Acc Id: XM_006238601   ⟹   XP_006238663
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85133,178,014 - 133,395,740 (+)NCBI
mRatBN7.25127,941,198 - 128,158,946 (+)NCBI
Rnor_6.05133,220,986 - 133,437,151 (+)NCBI
Rnor_5.05137,016,915 - 137,231,017 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006238603   ⟹   XP_006238665
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85133,178,020 - 133,392,868 (+)NCBI
mRatBN7.25127,941,204 - 128,156,085 (+)NCBI
Rnor_6.05133,220,986 - 133,435,770 (+)NCBI
Rnor_5.05137,016,915 - 137,231,017 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017593793   ⟹   XP_017449282
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85133,178,016 - 133,392,877 (+)NCBI
mRatBN7.25127,941,200 - 128,156,083 (+)NCBI
Rnor_6.05133,220,986 - 133,435,768 (+)NCBI
Sequence:
RefSeq Acc Id: XM_063288595   ⟹   XP_063144665
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85133,178,021 - 133,392,877 (+)NCBI
RefSeq Acc Id: XM_063288596   ⟹   XP_063144666
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85133,178,022 - 133,392,868 (+)NCBI
RefSeq Acc Id: XM_063288597   ⟹   XP_063144667
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85133,178,022 - 133,391,631 (+)NCBI
RefSeq Acc Id: XM_063288598   ⟹   XP_063144668
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85133,178,022 - 133,392,864 (+)NCBI
RefSeq Acc Id: XP_001072500   ⟸   XM_001072500
- Peptide Label: isoform X2
- UniProtKB: D3ZHN3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006238663   ⟸   XM_006238601
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006238665   ⟸   XM_006238603
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_017449282   ⟸   XM_017593793
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: ENSRNOP00000049840   ⟸   ENSRNOT00000047522
RefSeq Acc Id: XP_063144665   ⟸   XM_063288595
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063144666   ⟸   XM_063288596
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063144668   ⟸   XM_063288598
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063144667   ⟸   XM_063288597
- Peptide Label: isoform X6

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZHN3-F1-model_v2 AlphaFold D3ZHN3 1-516 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13693914
Promoter ID:EPDNEW_R4437
Type:initiation region
Name:Trabd2b_1
Description:TraB domain containing 2B
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.05133,221,049 - 133,221,109EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1586386 AgrOrtholog
BioCyc Gene G2FUF-40321 BioCyc
Ensembl Genes ENSRNOG00000029141 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000047522.5 UniProtKB/TrEMBL
InterPro Pheromone_shutdown_TraB UniProtKB/TrEMBL
  TIKI1/2-like UniProtKB/TrEMBL
KEGG Report rno:689914 UniProtKB/TrEMBL
NCBI Gene 689914 ENTREZGENE
PANTHER METALLOPROTEASE TIKI2 UniProtKB/TrEMBL
  PTHR31120 UniProtKB/TrEMBL
Pfam TraB UniProtKB/TrEMBL
PhenoGen Trabd2b PhenoGen
RatGTEx ENSRNOG00000029141 RatGTEx
UniProt D3ZHN3 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-07-29 Trabd2b  TraB domain containing 2B  RGD1564942  RGD1564942  Data merged from RGD:1564942 737654 PROVISIONAL
2012-10-02 Trabd2b  TraB domain containing 2B  LOC689914  similar to C05G5.5  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1564942  RGD1564942   RGD1564942_predicted  RGD1564942 (predicted)  'predicted' is removed 2292626 APPROVED
2008-01-09 LOC689914  similar to C05G5.5  LOC684165  similar to C05G5.5  Data merged from RGD:1593890 1643240 APPROVED
2006-11-20 LOC684165  similar to C05G5.5      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC689914  similar to C05G5.5      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-03-07 RGD1564942_predicted  RGD1564942 (predicted)  LOC298409  hypothetical LOC298409  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC298409  hypothetical LOC298409      Symbol and Name status set to provisional 70820 PROVISIONAL