TRABD2B (TraB domain containing 2B) - Rat Genome Database

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Gene: TRABD2B (TraB domain containing 2B) Sus scrofa
Analyze
Symbol: TRABD2B
Name: TraB domain containing 2B
RGD ID: 14121728
Description: ENCODES a protein that exhibits endopeptidase activity (inferred); metal ion binding (inferred); metalloendopeptidase activity (inferred); INVOLVED IN negative regulation of Wnt signaling pathway (inferred); positive regulation of protein oxidation (inferred); positive regulation of protein-containing complex assembly (inferred); FOUND IN membrane (inferred); organelle membrane (inferred); plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: metalloprotease TIKI2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6163,624,072 - 163,837,863 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16163,624,078 - 163,836,829 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26151,332,988 - 151,389,456 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IEA)
organelle membrane  (IBA,IEA)
plasma membrane  (IBA,IEA)

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
TRABD2B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6163,624,072 - 163,837,863 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16163,624,078 - 163,836,829 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26151,332,988 - 151,389,456 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TRABD2B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38147,760,528 - 47,997,385 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl147,760,528 - 47,997,385 (-)EnsemblGRCh38hg38GRCh38
GRCh37148,226,200 - 48,463,057 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36148,003,896 - 48,235,839 (-)NCBINCBI36Build 36hg18NCBI36
Celera146,513,002 - 46,749,292 (-)NCBICelera
Cytogenetic Map1p33NCBI
HuRef146,343,095 - 46,579,167 (-)NCBIHuRef
CHM1_1148,343,333 - 48,579,625 (-)NCBICHM1_1
T2T-CHM13v2.0147,639,427 - 47,876,248 (-)NCBIT2T-CHM13v2.0
Trabd2b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394114,263,394 - 114,472,295 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4114,263,921 - 114,472,295 (+)EnsemblGRCm39 Ensembl
GRCm384114,406,682 - 114,615,098 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4114,406,724 - 114,615,098 (+)EnsemblGRCm38mm10GRCm38
MGSCv374114,079,329 - 114,287,703 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364113,904,620 - 114,108,672 (+)NCBIMGSCv36mm8
Celera4113,154,874 - 113,362,877 (+)NCBICelera
Cytogenetic Map4D1NCBI
cM Map451.84NCBI
Trabd2b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85133,178,014 - 133,395,740 (+)NCBIGRCr8
mRatBN7.25127,941,198 - 128,158,946 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5127,941,114 - 128,143,747 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.05133,220,986 - 133,437,151 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5133,221,139 - 133,420,644 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05137,016,915 - 137,231,017 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45134,778,167 - 134,978,965 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera5126,596,412 - 126,812,016 (+)NCBICelera
Cytogenetic Map5q35NCBI
Trabd2b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546410,612,030 - 10,812,585 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495546410,612,515 - 10,817,725 (+)NCBIChiLan1.0ChiLan1.0
TRABD2B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21178,819,424 - 179,055,861 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11177,960,850 - 178,197,307 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0147,055,618 - 47,292,055 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1148,566,390 - 48,800,589 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl148,571,772 - 48,799,960 (-)Ensemblpanpan1.1panPan2
TRABD2B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11512,778,537 - 12,987,316 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1512,771,859 - 12,996,357 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1512,927,212 - 13,140,334 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01512,923,781 - 13,136,795 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11512,726,485 - 12,936,858 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01512,793,616 - 13,007,008 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01512,863,380 - 13,074,058 (+)NCBIUU_Cfam_GSD_1.0
Trabd2b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505862,706,640 - 62,927,944 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647428,531,931 - 28,752,736 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647428,565,563 - 28,752,370 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TRABD2B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12084,932,091 - 85,162,560 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2084,932,721 - 85,157,167 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603331,928,461 - 32,158,401 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Trabd2b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248594,849,877 - 5,063,994 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248594,849,319 - 5,121,008 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in TRABD2B
8865 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
10 2 11 1 3 10 8 11 3 3

Sequence


Ensembl Acc Id: ENSSSCT00000039681   ⟹   ENSSSCP00000059578
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl6163,624,072 - 163,837,863 (+)Ensembl
RefSeq Acc Id: XM_021096678   ⟹   XP_020952337
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.16163,624,078 - 163,836,829 (+)NCBI
Sequence:
RefSeq Acc Id: XP_020952337   ⟸   XM_021096678
- UniProtKB: A0A4X1WAJ6 (UniProtKB/TrEMBL),   A0A287BTK3 (UniProtKB/TrEMBL),   A0A8D2BN24 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000059578   ⟸   ENSSSCT00000039681


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000037318 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00025038843 UniProtKB/TrEMBL
  ENSSSCG00030057062 UniProtKB/TrEMBL
  ENSSSCG00040006009 UniProtKB/TrEMBL
  ENSSSCG00045025646 UniProtKB/TrEMBL
  ENSSSCG00050037023 UniProtKB/TrEMBL
  ENSSSCG00055009569 UniProtKB/TrEMBL
  ENSSSCG00060052449 UniProtKB/TrEMBL
  ENSSSCG00065047975 UniProtKB/TrEMBL
  ENSSSCG00070030042 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000039681 ENTREZGENE
  ENSSSCT00000039681.3 UniProtKB/TrEMBL
  ENSSSCT00025052775.1 UniProtKB/TrEMBL
  ENSSSCT00030079551.1 UniProtKB/TrEMBL
  ENSSSCT00040007919.1 UniProtKB/TrEMBL
  ENSSSCT00045043724.1 UniProtKB/TrEMBL
  ENSSSCT00050049810.1 UniProtKB/TrEMBL
  ENSSSCT00055018674.1 UniProtKB/TrEMBL
  ENSSSCT00060071387.1 UniProtKB/TrEMBL
  ENSSSCT00065065633.1 UniProtKB/TrEMBL
  ENSSSCT00070060379.1 UniProtKB/TrEMBL
  ENSSSCT00070060380.1 UniProtKB/TrEMBL
InterPro TIKI1/2-like UniProtKB/TrEMBL
  TraB_fam UniProtKB/TrEMBL
NCBI Gene TRABD2B ENTREZGENE
PANTHER METALLOPROTEASE TIKI2 UniProtKB/TrEMBL
  PTHR31120 UniProtKB/TrEMBL
Pfam TraB UniProtKB/TrEMBL
UniProt A0A287BTK3 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1WAJ6 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1WBZ7_PIG UniProtKB/TrEMBL
  A0A8D2BN24 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:94356 ENTREZGENE