D15Rat108 Marker Search Result - Rat Genome Database

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Marker: D15Rat108

Symbol: D15Rat108
Previously known as: oxsts9614; R0231-A01; 
RGD ID: 40200
Expected Size: 158 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr815666,410 - 666,568 (+)Marker Load Pipeline
mRatBN7.215616,969 - 617,127 (+)MAPPERmRatBN7.2
Rnor_6.015668,009 - 668,166NCBIRnor6.0
Rnor_5.015658,019 - 658,176UniSTSRnor5.0
RGSC_v3.415557,527 - 557,682RGDRGSC3.4
RGSC_v3.415557,528 - 557,685UniSTSRGSC3.4
RGSC_v3.115557,527 - 557,682RGD
Celera153,933,166 - 3,933,327UniSTS
FHH x ACI Map150.0UniSTS
FHH x ACI Map150.0RGD
Cytogenetic Map15p16UniSTS
Is Marker For: Strains:   AVN/Orl   BBDP/Rhw   BBDR/Rhw   BC/CpbU   BDIX/Han   BDVII/Cub   BN/SsNHsd   BP/Cub   BUF/Pit   DA/PitN   F344/Pit   FHH/Eur   IS/Kyo   LE/Mol   LEW/Pit   MNRA/N   WN/N   WKY/OlaHsd   WTC/Kyo   LOU/CHan   MNR/N   MR/Pit   ODU/N   WIST/Nhg   SR/Jr   NP9   OKA/Wsl   OM/Ztm   P5C   PVG/Pit   SD/Rij   SHR/OlaHsd   WAG/RijKyo   GK/KyoSwe   M520/N   ACI/N   BN-Lx/Cub   LN/Mav   GH/Omr   NEDH/K   SS/Jr   COP/OlaHsd  
Genes:   Kcnma1  


Annotation


#
Reference Title
Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
3. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
4. UniSTS Pipeline RGD automated pipelines


 
Forward Primer AACGGCAAACACAGGCAC
Reverse Primer CAGGAGCAATGAATGTGATTG
 
Template 
CCCACCATTTATTATAGGAAATCTCAGCAGGTCAGAGTCCCGGGACTTGAATGGAAACCTACTA
ATGGCATAATGACACCAGCCTGTAATTAAGGCATTTNTTGGGAAGTAACACAATTGAATTACAG
AAGTGAAGGTAACAGCCTGTGGGACTAGAGGTAAATTACAGGAGCAATGAATGTGATTGAAAGG
AGAGAGGAATGTTCTGGNTGGAGTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTCCGTGTGTGTGTGTGTGTTGTGTGTTGTGTGTTGTGTGTGTTGTGCCTGTGTTTGCCGTTT
GTGTGTTGTGCTGTGTGTCTGTGTNTGTGTGTATATGTGTGTTTGTGTGTGTGTGCATGAGTGG
TACCGAGCNCGAATTCGTAATCATGGTCATAGCGTTTCCGTGTGAAATTGTTATCCGCCACAAT
TCCACACAACATACGAGCGGAAGCTAAAGTGTAAAGCCGGGGTGCCATGATGAGCNACNACTAA
TGGTGCNNCANGCCNTTCANGGAACNTCGTGCACGNTAATATCGCACNCGNAAGGTTGCTTGGC
GCAGTGTTTNTTNCANAANGCAANNATCTCCGCGCTGAANTGACAGGTCAGTGTTCCANGGAAC
TTNTGGCNANGAACCTTACAAACCANGTATTTCNNAACNTANNCANNGNNTTTTCTTNCATNT
Strain, Expected Size(s)

ACI/N 182 AVN/Orl 182 BBDP/Rhw 182
BBDR/Rhw 178 BC/CpbU 182 BDIX/Han 182
BDVII/Cub 182 BN-Lx/Cub 182 BN/SsNHsd 182
BP/Cub 182 BUF/Pit 184 COP/OlaHsd 182
DA/PitN 182 F344/Pit 184 FHH/Eur 184
GH/Omr 172 GK/KyoSwe 182 IS/Kyo 180
LE/Mol 172 LEW/Pit 182 LN/Mav 184
LOU/CHan 172 M520/N 182 MNR/N 182
MNRA/N 182 MR/Pit 182 NEDH/K 184
NP9 182 ODU/N 182 OKA/Wsl 182
OM/Ztm 182 P5C 182 PVG/Pit 182
SD/Rij 182 SHR/OlaHsd 182 SR/Jr 184
SS/Jr 184 WAG/RijKyo 182 WIST/Nhg 182
WKY/OlaHsd 182 WN/N 182 WTC/Kyo 182


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
620715Kcnma1potassium calcium-activated channel subfamily M alpha 1153024801007675Rat
GenBank Nucleotide CH474061 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000245 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
10401805Kidm51Kidney mass QTL 51kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1530632945306329Rat
1354657Despr13Despair related QTL 130.0022locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)15129912054Rat
1641887Alcrsp14Alcohol response QTL 14response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)15142356671Rat
2298549Neuinf12Neuroinflammation QTL 123.5nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)15155302115Rat
731170Pur3Proteinuria QTL 32.30.0005urine protein amount (VT:0005160)urine protein excretion rate (CMO:0000759)15141686771Rat
8552920Pigfal8Plasma insulin-like growth factor 1 level QTL 83blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)15134723002Rat
8694361Abfw6Abdominal fat weight QTL 610.20.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)15134723002Rat
9589149Insul29Insulin level QTL 299.060.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)15134723002Rat



Database
Acc Id
Source(s)
NCBI Gene 83731 UniSTS