DXRat13 Marker Search Result - Rat Genome Database

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Marker: DXRat13

Symbol: DXRat13
Previously known as: oxsts7575; R029-C07; R0029-C07; 
RGD ID: 36035
Expected Size: 176 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X37,229,134 - 37,229,310 (+)MAPPERmRatBN7.2
Rnor_6.0X40,025,099 - 40,025,274NCBIRnor6.0
Rnor_5.0X40,335,609 - 40,335,784UniSTSRnor5.0
RGSC_v3.4X58,515,860 - 58,516,349RGDRGSC3.4
RGSC_v3.4X58,515,902 - 58,516,077UniSTSRGSC3.4
RGSC_v3.1X58,569,371 - 58,569,546RGD
CeleraX37,860,871 - 37,861,046UniSTS
RH 3.4 MapX526.51UniSTS
RH 3.4 MapX526.51RGD
RH 2.0 Map21472.7RGD
SHRSP x BN MapX14.89RGD
FHH x ACI MapX16.76RGD
Is Marker For: Strains:   AVN/Orl   BBDP/Rhw   BBDR/Rhw   BC/CpbU   BDIX/Han   BDVII/Cub   BN/SsNHsd   BP/Cub   BUF/Pit   DA/PitN   DON/Melb   F344/Pit   FHH/Eur   IS/Kyo   LE/Mol   LEW/Pit   LH/Mav   MHS/Gib   MNRA/N   WN/N   WKY/OlaHsd   WTC/Kyo   LOU/CHan   MNR/N   MR/Pit   ODU/N   WF/Pit   WIST/Nhg   SR/Jr   MNS/Gib   NP9   OKA/Wsl   OM/Ztm   P5C   PVG/Pit   SD/Rij   SHR/OlaHsd   SHRSP/Riv   WAG/RijKyo   GK/KyoSwe   M520/N   ACI/N   BN-Lx/Cub   LN/Mav   GH/Omr   NEDH/K   SS/Jr   COP/OlaHsd  


Annotation


References - curated
# Reference Title Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
3. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
4. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
5. UniSTS Pipeline RGD automated pipelines
6. RH Map Project RH Map Project, Laboratory of Genetic Research Website, 1-JUL-99, Laboratory of Genetic Research, Medical College of Wisconsin, http://www.lgr.mcw.edu/LGR/
7. A high density integrated genetic linkage and radiation hybrid map of the laboratory rat Steen RG, Kwitek-Black AE, etal., Genome Research, 1999, 6:1-8

Strains and Sequence

Sequence
 
Forward Primer CCTCTTGCTTATTCCCTCCC
Reverse Primer CCTGCTTGAGAAGCACACAA
 
Template 
TTGCATGCCTGCAGGTCGACTCTAGAGGATCCCCACAAACTTTTGGCATTTTCACACAATGTTA
TCTTCAGAGTTCCTGCTTGAGAAGCACACAATCAAAACACACACACACACACACACACACACAC
ACACACACAGTGTTTTAAGTAAAGTTTATGATTTTTTATTAGACTGTATTCACAGCTATCCTGG
AGTATTTGTGGCCTTCAGTCATAAGTTAAATATACCTGGGAGGGAATAAGCAAGAGGAGTCTAT
GGGTGGGCAACTGCACAAGAGAAGATGGCCTAGCTATAGATCAAGGAGTCCCATGGTTCTCCTA
CTTAGCTTAAGTGATCCCCCCACCATGGATGACGCGTTAGTGTAGTCTATAAATACTGTTGAAA
AGAACTTCTCAGAACACTGTCCTGTGTAGAGCAAGGTAGAAGAGCAAATGCTGATAAGTCAGGG
TAAAAAGATGGCAAATTAGAGAGACCTGGACATGTCCACCCATAAACATCTGAATAGTGATAAA
AAATAAGGTGGGTACCGAGCTCGAATTCGTAATCATGGTCTAGCTGTTTCCTGTGTGAAATTGT
TATCCGCTCAATTCCACACACATACGAGCCGGAGCTAAGTGTAAGCCTGGGGTC

Region

Nucleotide Sequences
GenBank Nucleotide CH473966 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000251 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information