CASK (calcium/calmodulin dependent serine protein kinase) - Rat Genome Database

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Gene: CASK (calcium/calmodulin dependent serine protein kinase) Sus scrofa
Analyze
Symbol: CASK
Name: calcium/calmodulin dependent serine protein kinase
RGD ID: 13932449
Description: ENCODES a protein that exhibits neurexin family protein binding (ortholog); PDZ domain binding (ortholog); protein kinase C binding (ortholog); INVOLVED IN calcium ion import (ortholog); cerebral cortex development (ortholog); establishment of localization in cell (ortholog); PARTICIPATES IN syndecan signaling pathway; ASSOCIATED WITH Acholinesterasemia (ortholog); Animal Mammary Neoplasms (ortholog); autistic disorder (ortholog); FOUND IN apical dendrite (ortholog); basement membrane (ortholog); basolateral plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: peripheral plasma membrane protein CASK
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX37,167,577 - 37,536,160 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X37,166,973 - 37,535,723 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X41,385,026 - 41,762,853 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
CASK
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX37,167,577 - 37,536,160 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X37,166,973 - 37,535,723 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X41,385,026 - 41,762,853 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CASK
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X41,514,934 - 41,923,554 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX41,514,934 - 41,923,554 (-)EnsemblGRCh38hg38GRCh38
GRCh37X41,374,187 - 41,782,807 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X41,264,287 - 41,667,212 (-)NCBINCBI36Build 36hg18NCBI36
Build 34X41,135,596 - 41,538,522NCBI
CeleraX45,516,432 - 45,924,508 (-)NCBICelera
Cytogenetic MapXp11.4NCBI
HuRefX39,105,639 - 39,513,256 (-)NCBIHuRef
CHM1_1X41,406,782 - 41,814,790 (-)NCBICHM1_1
T2T-CHM13v2.0X40,919,852 - 41,328,508 (-)NCBIT2T-CHM13v2.0
Cask
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X13,383,319 - 13,713,020 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX13,383,319 - 13,717,606 (-)EnsemblGRCm39 Ensembl
GRCm38X13,517,080 - 13,846,783 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX13,517,080 - 13,851,367 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X13,094,206 - 13,423,667 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X12,678,006 - 13,003,515 (-)NCBIMGSCv36mm8
MGSCv36X10,595,356 - 10,921,350 (-)NCBIMGSCv36mm8
CeleraX11,186,392 - 11,514,710 (-)NCBICelera
Cytogenetic MapXA1.1NCBI
cM MapX8.43NCBI
Cask
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X11,572,328 - 11,915,831 (+)NCBIGRCr8
mRatBN7.2X8,899,500 - 9,243,014 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX8,899,833 - 9,238,694 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX9,082,098 - 9,422,591 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X12,579,235 - 12,919,741 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X8,846,509 - 9,191,254 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X9,815,652 - 10,156,155 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX9,815,652 - 10,156,155 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 EnsemblX9,436,707 - 9,467,884 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X10,614,514 - 10,954,635 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X20,910,960 - 21,250,869 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1X20,964,277 - 21,304,187 (+)NCBI
CeleraX9,439,547 - 9,776,994 (+)NCBICelera
Cytogenetic MapXq12NCBI
Cask
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955565879,830 - 1,237,692 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955565879,560 - 1,242,727 (+)NCBIChiLan1.0ChiLan1.0
CASK
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X43,166,165 - 43,573,471 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X43,173,793 - 43,576,833 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X33,967,329 - 34,374,385 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X41,659,295 - 42,066,570 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX41,659,295 - 42,066,570 (-)Ensemblpanpan1.1panPan2
CASK
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X35,939,117 - 36,296,438 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX35,940,647 - 36,297,014 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX23,287,445 - 23,579,098 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X35,992,809 - 36,371,502 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX35,990,986 - 36,371,431 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X36,067,274 - 36,417,597 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X36,039,464 - 36,395,455 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X36,082,753 - 36,433,406 (-)NCBIUU_Cfam_GSD_1.0
Cask
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X28,092,601 - 28,440,781 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365027,937,146 - 8,281,492 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365027,933,312 - 8,281,492 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CASK
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X38,704,623 - 39,121,309 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660763,886,383 - 4,287,654 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cask
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476213,722,691 - 14,106,844 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476213,723,347 - 14,106,844 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in CASK
3611 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3

Sequence


Ensembl Acc Id: ENSSSCT00000035253   ⟹   ENSSSCP00000030793
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 EnsemblX37,167,998 - 37,536,160 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000049875   ⟹   ENSSSCP00000033162
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 EnsemblX37,341,574 - 37,536,160 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000066900   ⟹   ENSSSCP00000063140
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 EnsemblX37,342,669 - 37,536,160 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000073649   ⟹   ENSSSCP00000060379
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 EnsemblX37,167,998 - 37,536,160 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000083056   ⟹   ENSSSCP00000072507
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 EnsemblX37,167,577 - 37,535,650 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000089042   ⟹   ENSSSCP00000071095
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 EnsemblX37,167,998 - 37,536,160 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000105761   ⟹   ENSSSCP00000075535
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 EnsemblX37,167,998 - 37,536,160 (-)Ensembl
RefSeq Acc Id: XM_003360270   ⟹   XP_003360318
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X37,166,973 - 37,535,723 (-)NCBI
Sequence:
RefSeq Acc Id: XP_003360318   ⟸   XM_003360270
- UniProtKB: K7GSB2 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000060379   ⟸   ENSSSCT00000073649
Ensembl Acc Id: ENSSSCP00000072507   ⟸   ENSSSCT00000083056
Ensembl Acc Id: ENSSSCP00000071095   ⟸   ENSSSCT00000089042
Ensembl Acc Id: ENSSSCP00000033162   ⟸   ENSSSCT00000049875
Ensembl Acc Id: ENSSSCP00000030793   ⟸   ENSSSCT00000035253
Ensembl Acc Id: ENSSSCP00000063140   ⟸   ENSSSCT00000066900
Ensembl Acc Id: ENSSSCP00000075535   ⟸   ENSSSCT00000105761
Protein Domains
Guanylate kinase-like   L27   PDZ   Protein kinase   SH3


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000012253 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00060033125 UniProtKB/TrEMBL
  ENSSSCG00065054544 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000035253.3 UniProtKB/TrEMBL
  ENSSSCT00000049875.3 UniProtKB/TrEMBL
  ENSSSCT00000066900.2 UniProtKB/TrEMBL
  ENSSSCT00000073649.1 UniProtKB/TrEMBL
  ENSSSCT00000083056 ENTREZGENE
  ENSSSCT00000083056.2 UniProtKB/TrEMBL
  ENSSSCT00000089042.1 UniProtKB/TrEMBL
  ENSSSCT00000105761.1 UniProtKB/TrEMBL
  ENSSSCT00060044909.1 UniProtKB/TrEMBL
  ENSSSCT00065074738.1 UniProtKB/TrEMBL
Gene3D-CATH 2.30.42.10 UniProtKB/TrEMBL
  3.40.50.300 UniProtKB/TrEMBL
  6.10.140.620 UniProtKB/TrEMBL
  Guanylate Kinase phosphate binding domain UniProtKB/TrEMBL
  L27 domain UniProtKB/TrEMBL
  SH3 Domains UniProtKB/TrEMBL
  Transferase(Phosphotransferase) domain 1 UniProtKB/TrEMBL
InterPro CASK_SH3 UniProtKB/TrEMBL
  GK/Ca_channel_bsu UniProtKB/TrEMBL
  Guanylate_kin-like_dom UniProtKB/TrEMBL
  Guanylate_kinase_CS UniProtKB/TrEMBL
  Kinase-like_dom_sf UniProtKB/TrEMBL
  L27_C UniProtKB/TrEMBL
  L27_dom UniProtKB/TrEMBL
  L27_dom_sf UniProtKB/TrEMBL
  MAGUK UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  PDZ UniProtKB/TrEMBL
  PDZ_sf UniProtKB/TrEMBL
  Prot_kinase_dom UniProtKB/TrEMBL
  SH3-like_dom_sf UniProtKB/TrEMBL
  SH3_domain UniProtKB/TrEMBL
KEGG Report ssc:100152881 UniProtKB/TrEMBL
NCBI Gene CASK ENTREZGENE
PANTHER AGAP001683-PB UniProtKB/TrEMBL
  MEMBRANE-ASSOCIATED GUANYLATE KINASE MAGUK UniProtKB/TrEMBL
  PERIPHERAL PLASMA MEMBRANE PROTEIN CASK UniProtKB/TrEMBL
  SERINE/THREONINE-PROTEIN KINASE UniProtKB/TrEMBL
Pfam Guanylate_kin UniProtKB/TrEMBL
  L27 UniProtKB/TrEMBL
  PDZ UniProtKB/TrEMBL
  Pkinase UniProtKB/TrEMBL
  SH3_2 UniProtKB/TrEMBL
PROSITE GUANYLATE_KINASE_1 UniProtKB/TrEMBL
  GUANYLATE_KINASE_2 UniProtKB/TrEMBL
  L27 UniProtKB/TrEMBL
  PDZ UniProtKB/TrEMBL
  PROTEIN_KINASE_DOM UniProtKB/TrEMBL
  SH3 UniProtKB/TrEMBL
SMART GuKc UniProtKB/TrEMBL
  L27 UniProtKB/TrEMBL
  PDZ UniProtKB/TrEMBL
  SH3 UniProtKB/TrEMBL
Superfamily-SCOP SSF101288 UniProtKB/TrEMBL
  SSF50044 UniProtKB/TrEMBL
  SSF50156 UniProtKB/TrEMBL
  SSF52540 UniProtKB/TrEMBL
  SSF56112 UniProtKB/TrEMBL
UniProt A0A286ZNV9_PIG UniProtKB/TrEMBL
  A0A5G2Q877_PIG UniProtKB/TrEMBL
  A0A5G2QEM6_PIG UniProtKB/TrEMBL
  A0A5G2RAD8_PIG UniProtKB/TrEMBL
  A0A5G2RKB8_PIG UniProtKB/TrEMBL
  A0A8D1ZHH2_PIG UniProtKB/TrEMBL
  A0A8W4F8E2_PIG UniProtKB/TrEMBL
  K7GSB2 ENTREZGENE, UniProtKB/TrEMBL