CASK (calcium/calmodulin dependent serine protein kinase) - Rat Genome Database

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Gene: CASK (calcium/calmodulin dependent serine protein kinase) Chlorocebus sabaeus
Analyze
Symbol: CASK
Name: calcium/calmodulin dependent serine protein kinase
RGD ID: 18576652
Description: ENCODES a protein that exhibits neurexin family protein binding (ortholog); PDZ domain binding (ortholog); protein kinase C binding (ortholog); INVOLVED IN calcium ion import (ortholog); cerebral cortex development (ortholog); establishment of localization in cell (ortholog); PARTICIPATES IN syndecan signaling pathway; ASSOCIATED WITH Acholinesterasemia (ortholog); Animal Mammary Neoplasms (ortholog); autistic disorder (ortholog); FOUND IN apical dendrite (ortholog); basement membrane (ortholog); basolateral plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: peripheral plasma membrane protein CASK
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X38,704,623 - 39,121,309 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660763,886,383 - 4,287,654 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
CASK
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X38,704,623 - 39,121,309 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660763,886,383 - 4,287,654 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CASK
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X41,514,934 - 41,923,554 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX41,514,934 - 41,923,554 (-)EnsemblGRCh38hg38GRCh38
GRCh37X41,374,187 - 41,782,807 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X41,264,287 - 41,667,212 (-)NCBINCBI36Build 36hg18NCBI36
Build 34X41,135,596 - 41,538,522NCBI
CeleraX45,516,432 - 45,924,508 (-)NCBICelera
Cytogenetic MapXp11.4NCBI
HuRefX39,105,639 - 39,513,256 (-)NCBIHuRef
CHM1_1X41,406,782 - 41,814,790 (-)NCBICHM1_1
T2T-CHM13v2.0X40,919,852 - 41,328,508 (-)NCBIT2T-CHM13v2.0
Cask
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X13,383,319 - 13,713,020 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX13,383,319 - 13,717,606 (-)EnsemblGRCm39 Ensembl
GRCm38X13,517,080 - 13,846,783 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX13,517,080 - 13,851,367 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X13,094,206 - 13,423,667 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X12,678,006 - 13,003,515 (-)NCBIMGSCv36mm8
MGSCv36X10,595,356 - 10,921,350 (-)NCBIMGSCv36mm8
CeleraX11,186,392 - 11,514,710 (-)NCBICelera
Cytogenetic MapXA1.1NCBI
cM MapX8.43NCBI
Cask
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X11,572,328 - 11,915,831 (+)NCBIGRCr8
mRatBN7.2X8,899,500 - 9,243,014 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX8,899,833 - 9,238,694 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX9,082,098 - 9,422,591 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X12,579,235 - 12,919,741 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X8,846,509 - 9,191,254 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X9,815,652 - 10,156,155 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX9,815,652 - 10,156,155 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 EnsemblX9,436,707 - 9,467,884 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X10,614,514 - 10,954,635 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X20,910,960 - 21,250,869 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1X20,964,277 - 21,304,187 (+)NCBI
CeleraX9,439,547 - 9,776,994 (+)NCBICelera
Cytogenetic MapXq12NCBI
Cask
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955565879,830 - 1,237,692 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955565879,560 - 1,242,727 (+)NCBIChiLan1.0ChiLan1.0
CASK
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X43,166,165 - 43,573,471 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X43,173,793 - 43,576,833 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X33,967,329 - 34,374,385 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X41,659,295 - 42,066,570 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX41,659,295 - 42,066,570 (-)Ensemblpanpan1.1panPan2
CASK
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X35,939,117 - 36,296,438 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX35,940,647 - 36,297,014 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX23,287,445 - 23,579,098 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X35,992,809 - 36,371,502 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX35,990,986 - 36,371,431 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X36,067,274 - 36,417,597 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X36,039,464 - 36,395,455 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X36,082,753 - 36,433,406 (-)NCBIUU_Cfam_GSD_1.0
Cask
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X28,092,601 - 28,440,781 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365027,937,146 - 8,281,492 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365027,933,312 - 8,281,492 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CASK
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX37,167,577 - 37,536,160 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X37,166,973 - 37,535,723 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X41,385,026 - 41,762,853 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Cask
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476213,722,691 - 14,106,844 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476213,723,347 - 14,106,844 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_037992948   ⟹   XP_037848876
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660763,886,383 - 4,287,652 (-)NCBI
RefSeq Acc Id: XM_037992949   ⟹   XP_037848877
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660763,886,383 - 4,287,654 (-)NCBI
RefSeq Acc Id: XM_037992950   ⟹   XP_037848878
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660763,891,820 - 4,287,651 (-)NCBI
RefSeq Acc Id: XM_037992951   ⟹   XP_037848879
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660763,886,383 - 4,287,650 (-)NCBI
RefSeq Acc Id: XM_037992952   ⟹   XP_037848880
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660763,891,575 - 4,287,652 (-)NCBI
RefSeq Acc Id: XM_037992953   ⟹   XP_037848881
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660763,891,820 - 4,287,650 (-)NCBI
RefSeq Acc Id: XM_037992954   ⟹   XP_037848882
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660763,886,383 - 4,287,652 (-)NCBI
RefSeq Acc Id: XM_037992955   ⟹   XP_037848883
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660763,890,953 - 4,287,650 (-)NCBI
RefSeq Acc Id: XM_037992956   ⟹   XP_037848884
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660763,891,820 - 4,287,653 (-)NCBI
RefSeq Acc Id: XM_037992957   ⟹   XP_037848885
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660763,891,736 - 4,287,651 (-)NCBI
RefSeq Acc Id: XM_037992958   ⟹   XP_037848886
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660763,890,618 - 4,287,649 (-)NCBI
RefSeq Acc Id: XM_037992959   ⟹   XP_037848887
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660763,886,383 - 4,287,651 (-)NCBI
RefSeq Acc Id: XM_037992960   ⟹   XP_037848888
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660763,891,820 - 4,287,650 (-)NCBI
RefSeq Acc Id: XP_037848877   ⟸   XM_037992949
- Peptide Label: isoform X2
RefSeq Acc Id: XP_037848882   ⟸   XM_037992954
- Peptide Label: isoform X7
RefSeq Acc Id: XP_037848876   ⟸   XM_037992948
- Peptide Label: isoform X1
RefSeq Acc Id: XP_037848887   ⟸   XM_037992959
- Peptide Label: isoform X12
RefSeq Acc Id: XP_037848879   ⟸   XM_037992951
- Peptide Label: isoform X4
RefSeq Acc Id: XP_037848886   ⟸   XM_037992958
- Peptide Label: isoform X11
RefSeq Acc Id: XP_037848883   ⟸   XM_037992955
- Peptide Label: isoform X8
RefSeq Acc Id: XP_037848880   ⟸   XM_037992952
- Peptide Label: isoform X5
RefSeq Acc Id: XP_037848885   ⟸   XM_037992957
- Peptide Label: isoform X10
RefSeq Acc Id: XP_037848884   ⟸   XM_037992956
- Peptide Label: isoform X9
RefSeq Acc Id: XP_037848878   ⟸   XM_037992950
- Peptide Label: isoform X3
RefSeq Acc Id: XP_037848888   ⟸   XM_037992960
- Peptide Label: isoform X13
RefSeq Acc Id: XP_037848881   ⟸   XM_037992953
- Peptide Label: isoform X6


Additional Information

Database Acc Id Source(s)
NCBI Gene CASK ENTREZGENE