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mRNA 5'-UTR binding - Ontology Report - Rat Genome Database

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ONTOLOGY REPORT - ANNOTATIONS

Term:mRNA 5'-UTR binding
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Accession:GO:0048027 term browser browse the term
Definition:Binding to an mRNA molecule at its 5' untranslated region.

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mRNA 5'-UTR binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aco1 aconitase 1 IDA RGD PMID:9092825 RGD:1642740 NCBI chr 5:60,055,895...60,111,920
Ensembl chr 5:55,259,827...55,316,391 		JBrowse link
G Cct5 chaperonin containing TCP1 subunit 5 enables ISO
IEA 		(PMID:16213212)
GO_REF:0000107 		RGD
Ensembl		 PMID:16213212 GO_REF:0000107 NCBI chr 2:84,302,621...84,313,773
Ensembl chr 2:82,590,630...82,602,930 		JBrowse link
G Ddx3x DEAD-box helicase 3, X-linked enables ISO (PMID:22872150) RGD PMID:22872150 NCBI chr  X:12,152,346...12,165,983
Ensembl chr  X:9,479,532...9,493,168 		JBrowse link
G Dhx36 DEAH-box helicase 36 enables ISS
ISO
IEA 		GO_REF:0000024
(PMID:26489465)
GO_REF:0000107 		UniProt
RGD
Ensembl		 PMID:26489465 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:149,006,089...149,044,192
Ensembl chr 2:146,856,469...146,894,572 		JBrowse link
G Fmr1 fragile X messenger ribonucleoprotein 1 enables ISS
ISO
IEA 		GO_REF:0000024
(PMID:19166269)
GO_REF:0000107 		UniProt
RGD
Ensembl		 PMID:19166269 GO_REF:0000024 GO_REF:0000107 NCBI chr  X:152,284,857...152,322,686
Ensembl chr  X:147,240,301...147,278,050 		JBrowse link
G Gnl3 G protein nucleolar 3 enables ISO
IEA 		(PMID:16213212)
GO_REF:0000107 		RGD
Ensembl		 PMID:16213212 GO_REF:0000107 NCBI chr16:6,213,844...6,220,029
Ensembl chr16:6,207,402...6,213,392 		JBrowse link
G Igf2bp1 insulin-like growth factor 2 mRNA binding protein 1 enables ISO
IEA 		(PMID:9891060)
GO_REF:0000107 		RGD
Ensembl		 PMID:9891060 GO_REF:0000107 NCBI chr10:80,908,300...80,951,097
Ensembl chr10:80,908,076...80,951,129 		JBrowse link
G Igf2bp2 insulin-like growth factor 2 mRNA binding protein 2 enables ISO
IEA 		(PMID:9891060)
GO_REF:0000107
(PMID:25863250) 		RGD
Ensembl		 PMID:9891060 PMID:25863250 GO_REF:0000107 NCBI chr11:92,378,908...92,478,893
Ensembl chr11:78,874,414...78,974,377 		JBrowse link
G Igf2bp3 insulin-like growth factor 2 mRNA binding protein 3 enables ISO
IEA 		(PMID:9891060)
GO_REF:0000107 		RGD
Ensembl		 PMID:9891060 GO_REF:0000107 NCBI chr 4:79,391,367...79,525,923
Ensembl chr 4:78,060,494...78,194,865 		JBrowse link
G Larp1 La ribonucleoprotein 1, translational regulator enables ISO
IEA 		(PMID:24532714), (PMID:25940091), (PMID:26206669), (PMID:28379136), (PMID:28673543)
GO_REF:0000107 		RGD
Ensembl		 PMID:24532714 PMID:25940091 PMID:26206669 PMID:28379136 PMID:28673543 GO_REF:0000107 NCBI chr10:42,691,833...42,746,816
Ensembl chr10:42,191,325...42,243,371 		JBrowse link
G Larp6 La ribonucleoprotein 6, translational regulator enables ISO
IEA 		(PMID:20603131), (PMID:21746880), (PMID:22190748)
GO_REF:0000107 		RGD
Ensembl		 PMID:20603131 PMID:21746880 PMID:22190748 GO_REF:0000107 NCBI chr 8:61,183,744...61,205,548
Ensembl chr 8:61,184,116...61,205,535 		JBrowse link
G Myh10 myosin heavy chain 10 enables IEA
ISO 		GO_REF:0000107
(PMID:20603131) 		Ensembl
RGD		 PMID:20603131 GO_REF:0000107 NCBI chr10:53,891,955...54,024,032
Ensembl chr10:53,394,389...53,525,165 		JBrowse link
G Ncl nucleolin enables ISO (PMID:16213212) RGD PMID:16213212 NCBI chr 9:94,447,559...94,456,083
Ensembl chr 9:86,998,019...87,008,136 		JBrowse link
G Rara retinoic acid receptor, alpha IDA RGD PMID:19073915 RGD:2314253 NCBI chr10:84,379,780...84,424,371
Ensembl chr10:83,893,384...83,928,142 		JBrowse link
G Rpl26 ribosomal protein L26 enables ISO (PMID:16213212) RGD PMID:16213212 NCBI chr10:54,109,692...54,112,822
Ensembl chr10:53,610,421...53,613,966 		JBrowse link
G Rpl41 ribosomal protein L41 enables ISO (PMID:16213212) RGD PMID:16213212 NCBI chr 7:977,885...978,965 JBrowse link
G Rpl5 ribosomal protein L5 enables ISO (PMID:16213212) RGD PMID:16213212 NCBI chr14:1,988,792...1,995,236
Ensembl chr14:1,843,770...1,850,290 		JBrowse link
G Rps13 ribosomal protein S13 enables ISO (PMID:16213212) RGD PMID:16213212 NCBI chr 1:180,007,230...180,009,660
Ensembl chr 1:170,572,921...170,575,355
Ensembl chr 3:170,572,921...170,575,355 		JBrowse link
G Rps14 ribosomal protein S14 enables ISO (PMID:7867928) RGD PMID:7867928 NCBI chr18:56,492,010...56,503,092
Ensembl chr18:54,227,854...54,233,166 		JBrowse link
G Rps3a ribosomal protein S3a enables ISO (PMID:16213212) RGD PMID:16213212 NCBI chr 2:173,822,673...173,827,042
Ensembl chr 2:171,524,500...171,529,055 		JBrowse link
G Rps7 ribosomal protein S7 enables ISO (PMID:16213212) RGD PMID:16213212 NCBI chr 6:50,994,581...50,999,447
Ensembl chr 6:45,223,980...45,271,145
Ensembl chr 5:45,223,980...45,271,145 		JBrowse link
G Rsl1d1 ribosomal L1 domain containing 1 enables ISO (PMID:16213212) RGD PMID:16213212 NCBI chr10:4,931,839...4,943,726
Ensembl chr10:4,397,821...4,439,593 		JBrowse link
G Shmt1 serine hydroxymethyltransferase 1 enables ISO (PMID:10995219) RGD PMID:10995219 NCBI chr10:45,968,959...45,990,341
Ensembl chr10:45,468,700...45,497,820 		JBrowse link
G Syncrip synaptotagmin binding, cytoplasmic RNA interacting protein enables IDA
IBA 		GO_REF:0000033 GO_Central
RGD		 PMID:17403780 GO_REF:0000033, RGD:10059417 NCBI chr 8:98,282,358...98,315,412
Ensembl chr 8:89,402,866...89,435,515 		JBrowse link
G Utp23 UTP23, small subunit processome component enables ISO
IEA 		(PMID:16213212)
GO_REF:0000107 		RGD
Ensembl		 PMID:16213212 GO_REF:0000107 NCBI chr 7:83,185,187...83,196,652
Ensembl chr 7:83,189,656...83,196,655 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  molecular_function 21102
    binding 18151
      nucleic acid binding 3928
        RNA binding 1645
          mRNA binding 599
            mRNA 5'-UTR binding 25
paths to the root