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ONTOLOGY REPORT - ANNOTATIONS


Term:RNA nuclease activity
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Accession:GO:0004540 term browser browse the term
Definition:Catalysis of the hydrolysis of phosphodiester bonds in chains of RNA.
Synonyms:exact_synonym: ribonuclease activity


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RNA nuclease activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dis3l2 DIS3 like 3'-5' exoribonuclease 2 enables ISO (PMID:22306653) UniProt PMID:22306653 NCBI chrNW_004955453:3,558,744...3,851,222
Ensembl chrNW_004955453:3,559,067...3,830,064
JBrowse link
G N4bp1 NEDD4 binding protein 1 enables ISO (PMID:31133753) UniProt PMID:31133753 NCBI chrNW_004955474:6,796,068...6,814,906
Ensembl chrNW_004955474:6,796,066...6,814,906
JBrowse link
G Rnase6 ribonuclease A family member 6 enables ISO (PMID:9826755) UniProt PMID:9826755 NCBI chrNW_004955550:1,687,068...1,688,160 JBrowse link
G Rnase7 ribonuclease A family member 7 enables ISO (PMID:12244054), (PMID:19641608) UniProt PMID:12244054 PMID:19641608 NCBI chrNW_004955550:1,796,301...1,797,801 JBrowse link
G Rnasel ribonuclease L enables ISO (PMID:23196181) RGD
ARUK-UCL
PMID:8469023 PMID:23196181 RGD:2291995 NCBI chrNW_004955406:21,413,950...21,424,860
Ensembl chrNW_004955406:21,411,980...21,425,052
JBrowse link
G Rnaset2 ribonuclease T2 enables ISO (PMID:22735700) UniProt PMID:22735700 NCBI chrNW_004955439:15,098,210...15,122,015
Ensembl chrNW_004955439:15,098,114...15,125,413
JBrowse link
G Samhd1 SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1 enables
NOT|enables
ISO (PMID:25038827)
(PMID:29670289)
UniProt PMID:25038827 PMID:29670289 NCBI chrNW_004955422:24,714,103...24,780,672
Ensembl chrNW_004955422:24,735,161...24,778,830
JBrowse link
G Zc3h12a zinc finger CCCH-type containing 12A enables ISO (PMID:23355615) UniProt PMID:23355615 NCBI chrNW_004955452:15,306,398...15,314,959
Ensembl chrNW_004955452:15,305,775...15,314,959
JBrowse link
3'-5'-RNA exonuclease activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cnot7 CCR4-NOT transcription complex subunit 7 enables ISO (PMID:15769875) UniProt PMID:15769875 NCBI chrNW_004955463:285,228...306,077
Ensembl chrNW_004955463:285,228...306,077
JBrowse link
G Cnot8 CCR4-NOT transcription complex subunit 8 enables ISO (PMID:15769875) UniProt PMID:15769875 NCBI chrNW_004955408:9,112,208...9,132,650
Ensembl chrNW_004955408:9,112,208...9,132,758
JBrowse link
G Dis3 DIS3 homolog, exosome endoribonuclease and 3'-5' exoribonuclease enables ISO (PMID:20531386) UniProt PMID:20531386 NCBI chrNW_004955404:33,897,681...33,924,069
Ensembl chrNW_004955404:33,897,237...33,924,069
JBrowse link
G Dis3l DIS3 like exosome 3'-5' exoribonuclease enables ISO (PMID:20531389)
(PMID:20531386)
UniProt PMID:20531386 PMID:20531389 NCBI chrNW_004955450:9,279,323...9,313,402
Ensembl chrNW_004955450:9,279,323...9,314,507
JBrowse link
G Dis3l2 DIS3 like 3'-5' exoribonuclease 2 enables ISO (PMID:23594738), (PMID:25119025)
(PMID:23756462), (PMID:24141620)
UniProt PMID:23594738 PMID:23756462 PMID:24141620 PMID:25119025 NCBI chrNW_004955453:3,558,744...3,851,222
Ensembl chrNW_004955453:3,559,067...3,830,064
JBrowse link
G Exd2 exonuclease 3'-5' domain containing 2 enables ISO (PMID:31127291) UniProt PMID:31127291 NCBI chrNW_004955466:1,114,299...1,169,124
Ensembl chrNW_004955466:1,110,395...1,169,242
JBrowse link
G Exosc10 exosome component 10 enables ISO (PMID:26950371) BHF-UCL PMID:26950371 NCBI chrNW_004955486:2,601,362...2,626,451
Ensembl chrNW_004955486:2,601,322...2,626,876
JBrowse link
G Isg20 interferon stimulated exonuclease gene 20 enables ISO (PMID:11401564) UniProt PMID:11401564 NCBI chrNW_004955416:16,305,534...16,321,596
Ensembl chrNW_004955416:16,311,499...16,321,102
JBrowse link
G Myg1 MYG1 exonuclease enables ISO (PMID:31081026) FlyBase PMID:31081026 NCBI chrNW_004955458:560,033...567,102
Ensembl chrNW_004955458:560,207...567,081
JBrowse link
G Pan2 poly(A) specific ribonuclease subunit PAN2 enables ISO (PMID:14583602) UniProt PMID:14583602 NCBI chrNW_004955458:3,925,356...3,946,879
Ensembl chrNW_004955458:3,926,070...3,941,506
JBrowse link
G Pde12 phosphodiesterase 12 enables ISO (PMID:21245038), (PMID:21666256) UniProt PMID:21245038 PMID:21666256 NCBI chrNW_004955430:7,272,911...7,277,726
Ensembl chrNW_004955430:7,272,765...7,277,726
JBrowse link
G Pnpt1 polyribonucleotide nucleotidyltransferase 1 enables ISO (PMID:19509288) UniProt PMID:19509288 NCBI chrNW_004955424:27,407,451...27,449,830
Ensembl chrNW_004955424:27,407,489...27,448,992
JBrowse link
G Polrmt RNA polymerase mitochondrial enables ISO (PMID:35449456) FlyBase PMID:35449456 NCBI chrNW_004955495:7,111,271...7,124,005
Ensembl chrNW_004955495:7,111,260...7,124,291
JBrowse link
G Rexo2 RNA exonuclease 2 enables ISO (PMID:30926754), (PMID:32365187)
(PMID:31588022)
UniProt PMID:30926754 PMID:31588022 PMID:32365187 NCBI chrNW_004955412:16,025,304...16,035,925
Ensembl chrNW_004955412:16,025,037...16,037,757
JBrowse link
G Toe1 target of EGR1, exonuclease enables ISO (PMID:17178830) HGNC PMID:17178830 NCBI chrNW_004955464:12,924,185...12,927,567
Ensembl chrNW_004955464:12,924,191...12,927,567
JBrowse link
G Usb1 U6 snRNA biogenesis phosphodiesterase 1 enables ISO (PMID:23190533), (PMID:30215753) UniProt PMID:23190533 PMID:30215753 NCBI chrNW_004955433:15,572,884...15,580,108
Ensembl chrNW_004955433:15,572,881...15,579,509
JBrowse link
G Xrn2 5'-3' exoribonuclease 2 enables ISO (PMID:23482395) Reactome PMID:23482395 NCBI chrNW_004955415:29,107,060...29,175,374
Ensembl chrNW_004955415:29,107,034...29,175,538
JBrowse link
5'-3' RNA exonuclease activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cpsf3 cleavage and polyadenylation specific factor 3 enables ISO (PMID:18955505) UniProt PMID:18955505 NCBI chrNW_004955487:5,146,541...5,170,077
Ensembl chrNW_004955487:5,146,541...5,170,077
JBrowse link
G Dcp2 decapping mRNA 2 enables ISO (PMID:26950371) BHF-UCL PMID:26950371 NCBI chrNW_004955408:32,868,184...32,923,788
Ensembl chrNW_004955408:32,868,184...32,916,807
JBrowse link
G Xrn1 5'-3' exoribonuclease 1 enables ISO (PMID:9049243)
(PMID:26950371)
BHF-UCL PMID:9049243 PMID:26950371 NCBI chrNW_004955508:3,441,540...3,561,896
Ensembl chrNW_004955508:3,441,683...3,561,805
JBrowse link
endoribonuclease activity, cleaving miRNA-paired mRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ago2 argonaute RISC catalytic component 2 enables ISO (PMID:15260970)
(PMID:22795694)
BHF-UCL PMID:15260970 PMID:22795694 NCBI chrNW_004955461:14,194,268...14,260,949
Ensembl chrNW_004955461:14,205,748...14,253,861
JBrowse link
G Ago3 argonaute RISC catalytic component 3 enables ISO (PMID:29040713) UniProt PMID:29040713 NCBI chrNW_004955452:13,977,487...14,108,729
Ensembl chrNW_004955452:13,977,481...14,094,259
JBrowse link
endoribonuclease activity, cleaving siRNA-paired mRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ago2 argonaute RISC catalytic component 2 enables ISO (PMID:15260970), (PMID:17524464) UniProt PMID:15260970 PMID:17524464 NCBI chrNW_004955461:14,194,268...14,260,949
Ensembl chrNW_004955461:14,205,748...14,253,861
JBrowse link
exoribonuclease II activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dis3l DIS3 like exosome 3'-5' exoribonuclease enables ISO (PMID:37602378) UniProt PMID:37602378 NCBI chrNW_004955450:9,279,323...9,313,402
Ensembl chrNW_004955450:9,279,323...9,314,507
JBrowse link
G Helz2 helicase with zinc finger 2 enables ISO (PMID:37602378) UniProt PMID:37602378 NCBI chrNW_004955528:652,381...666,923
Ensembl chrNW_004955528:652,543...668,744
JBrowse link
phosphodiesterase decapping endonuclease activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt12 nudix hydrolase 12 enables ISO (PMID:31875550) UniProt PMID:31875550 NCBI chrNW_004955418:10,459,644...10,474,124
Ensembl chrNW_004955418:10,459,638...10,474,124
JBrowse link
G Nudt16 nudix hydrolase 16 enables ISO (PMID:29483298) UniProt PMID:29483298 NCBI chrNW_004955501:7,083,068...7,085,505 JBrowse link
poly(A)-specific ribonuclease activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cnot1 CCR4-NOT transcription complex subunit 1 contributes_to ISO (PMID:21976065) UniProtKB PMID:21976065 NCBI chrNW_004955433:15,938,791...16,027,547
Ensembl chrNW_004955433:15,938,791...16,027,545
JBrowse link
G Cnot2 CCR4-NOT transcription complex subunit 2 contributes_to ISO (PMID:21299754) UniProtKB PMID:21299754 NCBI chrNW_004955405:10,451,414...10,547,229
Ensembl chrNW_004955405:10,451,414...10,547,229
JBrowse link
G Cnot6 CCR4-NOT transcription complex subunit 6 enables ISO (PMID:11889047), (PMID:18377426) UniProt PMID:11889047 PMID:18377426 NCBI chrNW_004955408:170,399...239,492
Ensembl chrNW_004955408:170,399...218,040
JBrowse link
G Cnot6l CCR4-NOT transcription complex subunit 6 like enables ISO (PMID:17452450) MGI PMID:17452450 NCBI chrNW_004955433:2,206,462...2,290,773
Ensembl chrNW_004955433:2,213,444...2,316,049
JBrowse link
G Cnot7 CCR4-NOT transcription complex subunit 7 enables ISO (PMID:15769875), (PMID:19276069), (PMID:21336257), (PMID:31439799)
(PMID:18625844)
UniProt
MGI
PMID:15769875 PMID:18625844 PMID:19276069 PMID:21336257 PMID:31439799 NCBI chrNW_004955463:285,228...306,077
Ensembl chrNW_004955463:285,228...306,077
JBrowse link
G Cnot8 CCR4-NOT transcription complex subunit 8 enables ISO (PMID:15769875) UniProt PMID:15769875 NCBI chrNW_004955408:9,112,208...9,132,650
Ensembl chrNW_004955408:9,112,208...9,132,758
JBrowse link
G Noct nocturnin enables ISO (PMID:17400819)
(PMID:22073225)
UniProt PMID:17400819 PMID:22073225 NCBI chrNW_004955428:4,559,027...4,580,013 JBrowse link
G Pan2 poly(A) specific ribonuclease subunit PAN2 enables ISO (PMID:14583602) UniProt PMID:14583602 NCBI chrNW_004955458:3,925,356...3,946,879
Ensembl chrNW_004955458:3,926,070...3,941,506
JBrowse link
G Pan3 poly(A) specific ribonuclease subunit PAN3 contributes_to ISO (PMID:14583602) UniProtKB PMID:14583602 NCBI chrNW_004955497:7,500,478...7,646,541
Ensembl chrNW_004955497:7,500,748...7,647,255
JBrowse link
G Parn poly(A)-specific ribonuclease enables ISO (PMID:26482878), (PMID:26950371)
(PMID:25049417)
BHF-UCL
UniProt
PMID:25049417 PMID:26482878 PMID:26950371 NCBI chrNW_004955442:4,255,726...4,421,083
Ensembl chrNW_004955442:4,258,692...4,422,197
JBrowse link
G Pde12 phosphodiesterase 12 enables ISO (PMID:15231837) UniProt PMID:15231837 NCBI chrNW_004955430:7,272,911...7,277,726
Ensembl chrNW_004955430:7,272,765...7,277,726
JBrowse link
G Pnldc1 PARN like ribonuclease domain containing exonuclease 1 enables ISO (PMID:27515512) UniProt PMID:27515512 NCBI chrNW_004955439:21,039,638...21,058,558
Ensembl chrNW_004955439:21,035,825...21,058,549
JBrowse link
G Toe1 target of EGR1, exonuclease enables ISO (PMID:17178830) HGNC PMID:17178830 NCBI chrNW_004955464:12,924,185...12,927,567
Ensembl chrNW_004955464:12,924,191...12,927,567
JBrowse link
poly(U)-specific exoribonuclease activity, producing 3' uridine cyclic phosphate ends term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Usb1 U6 snRNA biogenesis phosphodiesterase 1 enables ISO (PMID:23022480), (PMID:23190533), (PMID:26213367), (PMID:28887445), (PMID:31832688) UniProt PMID:23022480 PMID:23190533 PMID:26213367 PMID:28887445 PMID:31832688 NCBI chrNW_004955433:15,572,884...15,580,108
Ensembl chrNW_004955433:15,572,881...15,579,509
JBrowse link
ribonuclease III activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dicer1 dicer 1, ribonuclease III enables ISO (PMID:12411504), (PMID:12411505)
(PMID:21753850)
Reactome
BHF-UCL
PMID:12411504 PMID:12411505 PMID:21753850 NCBI chrNW_004955438:17,374,899...17,431,599
Ensembl chrNW_004955438:17,382,493...17,431,797
JBrowse link
G Drosha drosha ribonuclease III enables ISO (PMID:14508493), (PMID:15574589) WB PMID:14508493 PMID:15574589 NCBI chrNW_004955426:17,387,595...17,505,126
Ensembl chrNW_004955426:17,387,534...17,502,294
JBrowse link
ribonuclease P activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pop1 POP1 homolog, ribonuclease P/MRP subunit contributes_to ISO (PMID:30454648), (PMID:8918471) UniProt PMID:8918471 PMID:30454648 NCBI chrNW_004955417:13,823,027...13,856,448
Ensembl chrNW_004955417:13,823,057...13,856,448
JBrowse link
G Pop4 POP4 homolog, ribonuclease P/MRP subunit contributes_to ISO (PMID:30454648) UniProt PMID:30454648 NCBI chrNW_004955468:7,983,394...7,994,863
Ensembl chrNW_004955468:7,983,394...7,994,453
JBrowse link
G Pop5 POP5 homolog, ribonuclease P/MRP subunit contributes_to
enables
ISO (PMID:30454648)
(PMID:11413139)
UniProt
MGI
PMID:11413139 PMID:30454648 NCBI chrNW_004955455:11,069,131...11,071,814
Ensembl chrNW_004955455:11,069,131...11,071,814
JBrowse link
G Pop7 POP7 homolog, ribonuclease P/MRP subunit contributes_to ISO (PMID:30454648) UniProt PMID:30454648 NCBI chrNW_004955573:217,809...218,915
Ensembl chrNW_004955573:215,932...218,976
JBrowse link
G Prorp protein only RNase P catalytic subunit enables ISO (PMID:25953853) UniProt PMID:25953853 NCBI chrNW_004955409:25,791,209...25,920,651
Ensembl chrNW_004955409:25,791,575...25,920,077
JBrowse link
G Rpp14 ribonuclease P/MRP subunit p14 contributes_to ISO (PMID:30454648) UniProt PMID:30454648 NCBI chrNW_004955430:1,794,460...1,802,527
Ensembl chrNW_004955430:1,794,460...1,802,527
JBrowse link
G Rpp21 ribonuclease P/MRP subunit p21 contributes_to ISO (PMID:30454648) UniProt PMID:30454648 NCBI chrNW_004955583:467,197...468,564
Ensembl chrNW_004955583:467,256...468,513
JBrowse link
G Rpp25 ribonuclease P and MRP subunit p25 contributes_to ISO (PMID:30454648) UniProt PMID:30454648 NCBI chrNW_004955450:3,026,257...3,027,683
Ensembl chrNW_004955450:3,026,502...3,027,065
JBrowse link
G Rpp30 ribonuclease P/MRP subunit p30 contributes_to ISO (PMID:30454648) UniProt PMID:30454648 NCBI chrNW_004955425:2,276,006...2,302,882
Ensembl chrNW_004955425:2,273,980...2,303,314
JBrowse link
G Rpp38 ribonuclease P/MRP subunit p38 contributes_to ISO (PMID:30454648) UniProt PMID:30454648 NCBI chrNW_004955429:19,358,765...19,360,973
Ensembl chrNW_004955429:19,358,765...19,360,973
JBrowse link
G Rpp40 ribonuclease P/MRP subunit p40 contributes_to ISO (PMID:30454648) UniProt PMID:30454648 NCBI chrNW_004955465:8,540,500...8,550,255
Ensembl chrNW_004955465:8,540,459...8,550,249
JBrowse link
RNA endonuclease activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ago1 argonaute RISC component 1 NOT|enables ISO (PMID:23809764) UniProt PMID:23809764 NCBI chrNW_004955452:13,935,028...13,967,281
Ensembl chrNW_004955452:13,934,346...13,968,624
JBrowse link
G Ago2 argonaute RISC catalytic component 2 enables ISO (PMID:18178619)
(PMID:20424607)
BHF-UCL
MGI
PMID:18178619 PMID:20424607 NCBI chrNW_004955461:14,194,268...14,260,949
Ensembl chrNW_004955461:14,205,748...14,253,861
JBrowse link
G Ago3 argonaute RISC catalytic component 3 enables ISO (PMID:29040713) UniProt PMID:29040713 NCBI chrNW_004955452:13,977,487...14,108,729
Ensembl chrNW_004955452:13,977,481...14,094,259
JBrowse link
G Ankzf1 ankyrin repeat and zinc finger peptidyl tRNA hydrolase 1 enables ISO (PMID:30244831), (PMID:31011209) UniProt PMID:30244831 PMID:31011209 NCBI chrNW_004955453:14,196,728...14,204,344
Ensembl chrNW_004955453:14,196,927...14,203,826
JBrowse link
G Apex1 apurinic/apyrimidinic endodeoxyribonuclease 1 ISO RGD PMID:19401441 RGD:2315668 NCBI chrNW_004955550:1,273,170...1,275,843
Ensembl chrNW_004955550:1,273,284...1,279,743
JBrowse link
G Cpsf3 cleavage and polyadenylation specific factor 3 enables ISO (PMID:30507380)
(PMID:18955505)
UniProt PMID:18955505 PMID:30507380 NCBI chrNW_004955487:5,146,541...5,170,077
Ensembl chrNW_004955487:5,146,541...5,170,077
JBrowse link
G Dicer1 dicer 1, ribonuclease III enables ISO (PMID:25549615)
(PMID:18325616), (PMID:19701182)
BHF-UCL
AgBase
PMID:18325616 PMID:19701182 PMID:25549615 NCBI chrNW_004955438:17,374,899...17,431,599
Ensembl chrNW_004955438:17,382,493...17,431,797
JBrowse link
G Drosha drosha ribonuclease III enables ISO (PMID:20424607) MGI PMID:20424607 NCBI chrNW_004955426:17,387,595...17,505,126
Ensembl chrNW_004955426:17,387,534...17,502,294
JBrowse link
G Endou endonuclease, poly(U) specific enables ISO (PMID:18936097)
(PMID:37803019)
UniProt
FlyBase
PMID:18936097 PMID:37803019 NCBI chrNW_004955500:6,631,749...6,653,457
Ensembl chrNW_004955500:6,632,743...6,646,657
JBrowse link
G Ern1 endoplasmic reticulum to nucleus signaling 1 enables ISO (PMID:11779465), (PMID:19328063), (PMID:21317875), (PMID:9637683)
(PMID:15601821), (PMID:25164867)
UniProt
WB
PMID:9637683 PMID:11779465 PMID:15601821 PMID:19328063 PMID:21317875 More... NCBI chrNW_004955478:7,720,664...7,803,662
Ensembl chrNW_004955478:7,751,830...7,799,460
JBrowse link
G Ints11 integrator complex subunit 11 enables ISO (PMID:16239144) FlyBase PMID:16239144 NCBI chrNW_004955486:9,479,057...9,491,629
Ensembl chrNW_004955486:9,479,057...9,491,629
JBrowse link
G Lactb2 lactamase beta 2 enables ISO (PMID:26826708) UniProt PMID:26826708 NCBI chrNW_004955444:9,059,999...9,088,705
Ensembl chrNW_004955444:9,059,572...9,088,705
JBrowse link
G Mblac1 metallo-beta-lactamase domain containing 1 enables ISO (PMID:30507380) UniProt PMID:30507380 NCBI chrNW_004955573:745,202...747,402
Ensembl chrNW_004955573:745,202...747,402
JBrowse link
G Nob1 NIN1 (RPN12) binding protein 1 homolog enables ISO (PMID:23439679), (PMID:23482395) Reactome PMID:23439679 PMID:23482395 NCBI chrNW_004955484:6,996,795...7,006,499
Ensembl chrNW_004955484:6,996,797...7,006,164
JBrowse link
G Piwil1 piwi like RNA-mediated gene silencing 1 enables ISO (PMID:22121019), (PMID:25582079) FlyBase PMID:22121019 PMID:25582079 NCBI chrNW_004955482:1,435,925...1,451,067
Ensembl chrNW_004955482:1,435,925...1,450,857
JBrowse link
G Piwil2 piwi like RNA-mediated gene silencing 2 enables ISO (PMID:28633017)
(PMID:22020280), (PMID:23706823)
UniProt PMID:22020280 PMID:23706823 PMID:28633017 NCBI chrNW_004955403:45,737,674...45,819,478
Ensembl chrNW_004955403:45,737,674...45,819,873
JBrowse link
G Piwil4 piwi like RNA-mediated gene silencing 4 NOT|enables ISO (PMID:22020280) UniProt PMID:22020280 NCBI chrNW_004955605:331,633...398,528 JBrowse link
G Rnasek ribonuclease K enables ISO (PMID:17881363) UniProt PMID:17881363 NCBI chrNW_004955467:9,914,907...9,917,051
Ensembl chrNW_004955467:9,914,907...9,917,051
JBrowse link
G Slfn11 schlafen family member 11 enables ISO PMID:29563550 UniProt PMID:29563550 RGD:13601999 NCBI chrNW_004955481:9,885,798...9,900,330 JBrowse link
G Slfn14 schlafen family member 14 enables ISO (PMID:25996083) UniProt PMID:25996083 NCBI chrNW_004955481:10,037,941...10,046,549
Ensembl chrNW_004955481:10,037,941...10,046,549
JBrowse link
G Smg6 SMG6 nonsense mediated mRNA decay factor enables ISO (PMID:19060897)
(PMID:18974281)
UniProt PMID:18974281 PMID:19060897 NCBI chrNW_004955481:940,041...1,177,998
Ensembl chrNW_004955481:940,041...1,177,998
JBrowse link
G Snd1 staphylococcal nuclease and tudor domain containing 1 enables ISO (PMID:28546213) UniProt PMID:28546213 NCBI chrNW_004955479:8,692,674...9,124,504
Ensembl chrNW_004955479:8,692,674...9,154,272
JBrowse link
G Ybey ybeY metalloendoribonuclease enables ISO (PMID:28153719) UniProt PMID:28153719 NCBI chrNW_004955407:42,706,407...42,710,962
Ensembl chrNW_004955407:42,706,439...42,710,962
JBrowse link
G Zc3h12a zinc finger CCCH-type containing 12A enables ISO (PMID:22055188), (PMID:26000482), (PMID:26255671) UniProt PMID:22055188 PMID:26000482 PMID:26255671 NCBI chrNW_004955452:15,306,398...15,314,959
Ensembl chrNW_004955452:15,305,775...15,314,959
JBrowse link
RNA endonuclease activity, producing 3'-phosphomonoesters term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rida reactive intermediate imine deaminase A homolog ISO RGD PMID:10400702 RGD:9685547 NCBI chrNW_004955417:13,810,596...13,822,982
Ensembl chrNW_004955417:13,810,596...13,822,982
JBrowse link
RNA endonuclease activity, producing 5'-phosphomonoesters term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Endov endonuclease V enables ISO (PMID:23912683), (PMID:23912718), (PMID:27573237), (PMID:3170309) UniProt PMID:3170309 PMID:23912683 PMID:23912718 PMID:27573237 NCBI chrNW_004955506:2,483,409...2,495,484
Ensembl chrNW_004955506:2,483,409...2,495,484
JBrowse link
RNA exonuclease activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cnot6 CCR4-NOT transcription complex subunit 6 enables ISO (PMID:11889047) UniProt PMID:11889047 NCBI chrNW_004955408:170,399...239,492
Ensembl chrNW_004955408:170,399...218,040
JBrowse link
G Cnot7 CCR4-NOT transcription complex subunit 7 enables ISO (PMID:19276069) UniProt PMID:19276069 NCBI chrNW_004955463:285,228...306,077
Ensembl chrNW_004955463:285,228...306,077
JBrowse link
G Exosc1 exosome component 1 NOT|enables ISO (PMID:17174896) UniProt PMID:17174896 NCBI chrNW_004955507:3,576,555...3,583,183
Ensembl chrNW_004955507:3,576,555...3,583,183
JBrowse link
G Exosc10 exosome component 10 enables ISO (PMID:17174896) UniProt PMID:17174896 NCBI chrNW_004955486:2,601,362...2,626,451
Ensembl chrNW_004955486:2,601,322...2,626,876
JBrowse link
G Exosc2 exosome component 2 NOT|enables ISO (PMID:17174896) UniProt PMID:17174896 NCBI chrNW_004955513:639,798...648,360
Ensembl chrNW_004955513:639,731...651,418
JBrowse link
G Exosc3 exosome component 3 NOT|enables ISO (PMID:17174896) UniProt PMID:17174896 NCBI chrNW_004955419:28,683,896...28,692,006
Ensembl chrNW_004955419:28,683,896...28,693,395
JBrowse link
G Exosc4 exosome component 4 NOT|enables ISO (PMID:17174896) UniProt PMID:17174896 NCBI chrNW_004955454:2,732,308...2,734,398
Ensembl chrNW_004955454:2,732,308...2,734,398
JBrowse link
G Exosc5 exosome component 5 NOT|enables ISO (PMID:17174896) UniProt PMID:17174896 NCBI chrNW_004955555:328,130...334,106
Ensembl chrNW_004955555:326,698...334,106
JBrowse link
G Exosc6 exosome component 6 NOT|enables ISO (PMID:17174896) UniProt PMID:17174896 NCBI chrNW_004955484:3,088,133...3,089,551
Ensembl chrNW_004955484:3,088,624...3,089,472
JBrowse link
G Exosc7 exosome component 7 NOT|enables ISO (PMID:17174896) UniProt PMID:17174896 NCBI chrNW_004955420:26,677,692...26,697,977
Ensembl chrNW_004955420:26,677,692...26,697,977
JBrowse link
G Exosc8 exosome component 8 NOT|enables ISO (PMID:17174896) UniProt PMID:17174896 NCBI chrNW_004955431:9,048,210...9,058,079
Ensembl chrNW_004955431:9,049,896...9,058,264
JBrowse link
G Exosc9 exosome component 9 NOT|enables ISO (PMID:17174896) UniProt PMID:17174896 NCBI chrNW_004955428:18,732,733...18,743,743
Ensembl chrNW_004955428:18,731,919...18,743,756
JBrowse link
G Zc3h12a zinc finger CCCH-type containing 12A enables ISO (PMID:19322177) UniProt PMID:19322177 NCBI chrNW_004955452:15,306,398...15,314,959
Ensembl chrNW_004955452:15,305,775...15,314,959
JBrowse link
RNA-DNA hybrid ribonuclease activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fen1 flap structure-specific endonuclease 1 enables ISO (PMID:7961795) UniProt PMID:7961795 NCBI chrNW_004955511:5,918,667...5,922,506
Ensembl chrNW_004955511:5,918,667...5,922,506
JBrowse link
G Rnaseh1 ribonuclease H1 enables ISO (PMID:15831789)
(PMID:21700224)
MGI
UniProt
PMID:15831789 PMID:21700224 NCBI chrNW_004955487:3,808,426...3,815,682
Ensembl chrNW_004955487:3,808,419...3,815,682
JBrowse link
G Rnaseh2a ribonuclease H2 subunit A enables ISO (PMID:21177858) UniProt PMID:21177858 NCBI chrNW_004955415:31,884,533...31,894,159
Ensembl chrNW_004955415:31,884,533...31,898,433
JBrowse link
tRNA-specific ribonuclease activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Elac1 elaC ribonuclease Z 1 enables ISO (PMID:32075755) UniProt PMID:32075755 NCBI chrNW_004955402:35,904,552...35,918,120
Ensembl chrNW_004955402:35,904,553...35,918,111
JBrowse link
G Elac2 elaC ribonuclease Z 2 enables ISO (PMID:12711671), (PMID:15317868), (PMID:16361254), (PMID:18809514), (PMID:21559454), (PMID:21593607) Reactome PMID:12711671 PMID:15317868 PMID:16361254 PMID:18809514 PMID:21559454 More... NCBI chrNW_004955467:4,406,947...4,428,769
Ensembl chrNW_004955467:4,406,824...4,427,780
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  molecular_function 14380
    catalytic activity 3774
      catalytic activity, acting on a nucleic acid 417
        catalytic activity, acting on RNA 253
          RNA nuclease activity 87
            5'-hydroxyl dinucleotide hydrolase activity 0
            RNA endonuclease activity + 42
            RNA exonuclease activity + 39
            double-stranded RNA-specific ribonuclease activity + 2
            oligoribonucleotidase activity 0
            rRNA endonuclease activity 0
            ribonuclease E activity 0
            ribonuclease G activity 0
            ribonuclease T1 activity 0
            tRNA-specific ribonuclease activity + 13
Path 2
Term Annotations click to browse term
  molecular_function 14380
    catalytic activity 3774
      hydrolase activity 1349
        hydrolase activity, acting on ester bonds 557
          nuclease activity 150
            RNA nuclease activity 87
              5'-hydroxyl dinucleotide hydrolase activity 0
              RNA endonuclease activity + 42
              RNA exonuclease activity + 39
              double-stranded RNA-specific ribonuclease activity + 2
              oligoribonucleotidase activity 0
              rRNA endonuclease activity 0
              ribonuclease E activity 0
              ribonuclease G activity 0
              ribonuclease T1 activity 0
              tRNA-specific ribonuclease activity + 13
paths to the root