Slfn11 (schlafen family member 11) - Rat Genome Database

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Gene: Slfn11 (schlafen family member 11) Chinchilla lanigera
Analyze
Symbol: Slfn11
Name: schlafen family member 11
RGD ID: 8878857
Description: ENCODES a protein that exhibits ATP hydrolysis activity (ortholog); RNA endonuclease activity (ortholog); tRNA binding (ortholog); INVOLVED IN chromatin remodeling (ortholog); defense response to virus (ortholog); DNA damage response (ortholog); ASSOCIATED WITH COVID-19 (ortholog); genetic disease (ortholog); peroxisome biogenesis disorder 3A (ortholog); FOUND IN cytosol (ortholog); nucleoplasm (ortholog); nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: schlafen family member 13; Slfn13
RGD Orthologs
Human
Mouse
Rat
Bonobo
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554819,885,798 - 9,900,330 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Slfn11
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554819,885,798 - 9,900,330 (-)NCBIChiLan1.0ChiLan1.0
SLFN11
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381735,350,305 - 35,373,621 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1735,350,305 - 35,373,701 (-)EnsemblGRCh38hg38GRCh38
GRCh371733,677,324 - 33,700,640 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361730,701,437 - 30,724,833 (-)NCBINCBI36Build 36hg18NCBI36
Celera1730,587,468 - 30,610,868 (-)NCBICelera
Cytogenetic Map17q12NCBI
HuRef1729,862,347 - 29,885,745 (-)NCBIHuRef
CHM1_11733,741,641 - 33,765,042 (-)NCBICHM1_1
T2T-CHM13v2.01736,298,255 - 36,321,577 (-)NCBIT2T-CHM13v2.0
Slfn9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391182,865,142 - 82,883,041 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1182,869,216 - 82,882,656 (-)EnsemblGRCm39 Ensembl
GRCm381182,974,316 - 82,991,830 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1182,978,390 - 82,991,830 (-)EnsemblGRCm38mm10GRCm38
MGSCv371182,793,805 - 82,805,332 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361182,796,498 - 82,808,025 (-)NCBIMGSCv36mm8
Celera1192,607,183 - 92,618,506 (-)NCBICelera
Cytogenetic Map11CNCBI
cM Map1150.3NCBI
Slfn9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81068,406,641 - 68,420,062 (-)NCBIGRCr8
mRatBN7.21067,909,105 - 67,955,912 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1067,909,106 - 67,925,383 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1072,529,137 - 72,542,558 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01072,034,519 - 72,047,940 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01067,498,563 - 67,511,986 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01070,326,157 - 70,343,024 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1070,326,157 - 70,342,492 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01069,956,875 - 69,972,497 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41071,192,184 - 71,205,605 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11071,205,850 - 71,219,281 (-)NCBI
Celera1066,853,364 - 66,866,767 (-)NCBICelera
Cytogenetic Map10q26NCBI
SLFN11
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21929,093,171 - 29,116,382 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11730,974,154 - 30,999,272 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01721,412,361 - 21,436,650 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11721,705,803 - 21,728,810 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1721,715,569 - 21,727,019 (+)Ensemblpanpan1.1panPan2
SLFN11
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1239,974,730 - 39,996,255 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11239,974,519 - 39,996,257 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21241,461,436 - 41,503,336 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLFN11
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11628,819,647 - 28,842,121 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1628,817,666 - 28,842,065 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660751,142,108 - 1,168,767 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_013503414   ⟹   XP_013358868
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554819,885,798 - 9,900,330 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013358868 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000011849.1
Reference Protein Sequences
RefSeq Acc Id: XP_013358868   ⟸   XM_013503414
- Sequence:
Protein Domains
Poxin-Schlafen/Schlafen-like N-terminal   Schlafen AlbA-2


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000008166 UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000011988.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.950.30 UniProtKB/TrEMBL
InterPro Poxin-SLFN/SLFN_N UniProtKB/TrEMBL
  Schlafen UniProtKB/TrEMBL
  Schlafen_AlbA_2_dom UniProtKB/TrEMBL
  Schlafen_AlbA_2_dom_sf UniProtKB/TrEMBL
NCBI Gene Slfn13 ENTREZGENE
PANTHER PTHR12155 UniProtKB/TrEMBL
  SCHLAFEN FAMILY MEMBER 13 UniProtKB/TrEMBL
Pfam AlbA_2 UniProtKB/TrEMBL
  B3R UniProtKB/TrEMBL
UniProt A0A8C2VC68_CHILA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-08-25 Slfn11  schlafen family member 11  Slfn13  schlafen family member 13  Symbol and/or name change 5135510 APPROVED