Nob1 (NIN1 (RPN12) binding protein 1 homolog) - Rat Genome Database

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Gene: Nob1 (NIN1 (RPN12) binding protein 1 homolog) Chinchilla lanigera
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Symbol: Nob1
Name: NIN1 (RPN12) binding protein 1 homolog
RGD ID: 8931810
Description: ENCODES a protein that exhibits RNA endonuclease activity (ortholog); INVOLVED IN visual perception (ortholog); PARTICIPATES IN ribosome biogenesis pathway; ASSOCIATED WITH autosomal dominant dyskeratosis congenita 6 (ortholog); genetic disease (ortholog); Hearing Loss, Noise-Induced (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: NIN1/PSMD8 binding protein 1 homolog; NIN1/RPN12 binding protein 1 homolog; RNA-binding protein NOB1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554846,996,797 - 7,006,164 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554846,996,795 - 7,006,499 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Nob1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554846,996,797 - 7,006,164 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554846,996,795 - 7,006,499 (+)NCBIChiLan1.0ChiLan1.0
NOB1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381669,741,871 - 69,754,926 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1669,741,871 - 69,754,926 (-)EnsemblGRCh38hg38GRCh38
GRCh371669,775,774 - 69,788,829 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361668,333,275 - 68,346,330 (-)NCBINCBI36Build 36hg18NCBI36
Celera1654,290,520 - 54,303,578 (-)NCBICelera
Cytogenetic Map16q22.1NCBI
HuRef1655,654,088 - 55,667,425 (-)NCBIHuRef
CHM1_11671,183,740 - 71,196,858 (-)NCBICHM1_1
T2T-CHM13v2.01675,544,399 - 75,557,460 (-)NCBIT2T-CHM13v2.0
Nob1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398108,139,121 - 108,151,670 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8108,139,118 - 108,151,683 (-)EnsemblGRCm39 Ensembl
GRCm388107,412,489 - 107,425,038 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8107,412,486 - 107,425,051 (-)EnsemblGRCm38mm10GRCm38
MGSCv378109,936,389 - 109,948,938 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv368110,301,618 - 110,314,167 (-)NCBIMGSCv36mm8
Celera8111,643,138 - 111,655,687 (-)NCBICelera
Cytogenetic Map8D3NCBI
cM Map854.12NCBI
Nob1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81952,232,543 - 52,245,824 (-)NCBIGRCr8
mRatBN7.21935,322,803 - 35,335,354 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1935,322,669 - 35,346,815 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1942,138,262 - 42,150,724 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01942,791,623 - 42,804,085 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01945,097,502 - 45,109,814 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01938,397,466 - 38,409,924 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1938,397,466 - 38,409,924 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01949,267,159 - 49,279,617 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41937,278,326 - 37,290,784 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11937,283,206 - 37,295,665 (-)NCBI
Celera1934,744,223 - 34,756,681 (-)NCBICelera
Cytogenetic Map19q12NCBI
NOB1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21879,292,957 - 79,305,907 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11685,205,139 - 85,217,829 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01650,122,905 - 50,135,096 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11669,506,425 - 69,517,932 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1669,506,425 - 69,517,932 (-)Ensemblpanpan1.1panPan2
NOB1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1579,958,145 - 79,966,166 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl579,945,446 - 79,966,147 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha579,946,907 - 79,955,072 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0580,388,489 - 80,396,668 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl580,388,557 - 80,396,894 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1580,216,290 - 80,224,456 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0579,905,807 - 79,913,960 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0580,538,734 - 80,546,900 (+)NCBIUU_Cfam_GSD_1.0
Nob1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934939,780,952 - 39,792,829 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647519,796,296 - 19,808,152 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647519,794,199 - 19,808,142 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NOB1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl617,233,858 - 17,245,451 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1617,233,863 - 17,245,451 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2616,181,508 - 16,193,098 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NOB1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1557,646,386 - 57,661,014 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl557,646,587 - 57,662,406 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604720,377,675 - 20,390,841 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nob1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474616,661,126 - 16,675,962 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474616,661,039 - 16,672,600 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSCLAT00000008595   ⟹   ENSCLAP00000008468
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554846,996,797 - 7,006,164 (+)Ensembl
RefSeq Acc Id: XM_013503942   ⟹   XP_013359396
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554846,996,795 - 7,006,499 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013359396 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000008468
  ENSCLAP00000008468.1
RefSeq Acc Id: XP_013359396   ⟸   XM_013503942
- UniProtKB: A0A8C2V5K8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000008468   ⟸   ENSCLAT00000008595

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000005926 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000008595 ENTREZGENE
  ENSCLAT00000008595.1 UniProtKB/TrEMBL
Gene3D-CATH 5'-nuclease UniProtKB/TrEMBL
  6.20.210.10 UniProtKB/TrEMBL
InterPro NOB1 UniProtKB/TrEMBL
  Nob1_euk UniProtKB/TrEMBL
  NOB1_Zf-like_sf UniProtKB/TrEMBL
  NOB1_Zn-bd UniProtKB/TrEMBL
  Ribonuclease_PIN UniProtKB/TrEMBL
  WRNPLPNID UniProtKB/TrEMBL
NCBI Gene Nob1 ENTREZGENE
PANTHER PTHR12814 UniProtKB/TrEMBL
  RNA-BINDING PROTEIN NOB1 UniProtKB/TrEMBL
Pfam NOB1_Zn_bind UniProtKB/TrEMBL
  PIN_6 UniProtKB/TrEMBL
  WRNPLPNID UniProtKB/TrEMBL
PIRSF D-site_20S_pre-rRNA_nuclease UniProtKB/TrEMBL
Superfamily-SCOP SSF144206 UniProtKB/TrEMBL
UniProt A0A8C2V5K8 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-02-27 Nob1  NIN1 (RPN12) binding protein 1 homolog    NIN1/PSMD8 binding protein 1 homolog  Symbol and/or name change 5135510 APPROVED
2016-08-03 Nob1  NIN1/PSMD8 binding protein 1 homolog    NIN1/RPN12 binding protein 1 homolog  Symbol and/or name change 5135510 APPROVED
2015-08-25 Nob1  NIN1/RPN12 binding protein 1 homolog    NIN1/RPN12 binding protein 1 homolog (S. cerevisiae)  Symbol and/or name change 5135510 APPROVED