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ONTOLOGY REPORT - ANNOTATIONS

Term:maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
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Accession:GO:0000462 term browser browse the term
Definition:Any process involved in the maturation of a precursor Small SubUnit (SSU) ribosomal RNA (rRNA) molecule into a mature SSU-rRNA molecule from the pre-rRNA molecule originally produced as a tricistronic rRNA transcript that contains the Small Subunit (SSU) rRNA, 5.8S rRNA, and the Large Subunit (LSU) in that order from 5' to 3' along the primary transcript.
Synonyms:narrow_synonym: maturation of 18S rRNA
 alt_id: GO:1990041


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maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bms1 BMS1 ribosome biogenesis factor involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:151,558,163...151,595,187
Ensembl chr 4:151,558,163...151,595,127 		JBrowse link
G Bysl bystin-like involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
(PMID:17242206)		 Ensembl
RGD		 PMID:17242206 GO_REF:0000107 NCBI chr 9:13,382,806...13,392,557
Ensembl chr 9:13,382,557...13,394,339 		JBrowse link
G Dcaf13 DDB1 and CUL4 associated factor 13 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:70,160,983...70,196,142
Ensembl chr 7:70,160,941...70,196,142 		JBrowse link
G Dhx37 DEAH-box helicase 37 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr12:31,194,782...31,214,890
Ensembl chr12:31,194,859...31,216,802 		JBrowse link
G Ercc2 ERCC excision repair 2, TFIIH core complex helicase subunit acts_upstream_of_or_within ISO MGI:2183949 (PMID:23562818) RGD PMID:23562818 NCBI chr 1:79,033,342...79,047,102
Ensembl chr 1:79,033,326...79,047,102 		JBrowse link
G Gtf2h5 general transcription factor IIH subunit 5 acts_upstream_of_or_within ISO MGI:5514340 (PMID:23562818) RGD PMID:23562818 NCBI chr 1:46,656,804...46,663,512
Ensembl chr 1:46,656,859...46,664,939 		JBrowse link
G Heatr1 HEAT repeat containing 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr17:58,053,288...58,093,895
Ensembl chr17:58,051,700...58,093,948 		JBrowse link
G LOC102548369 40S ribosomal protein S16-like involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr15:92,259,763...92,260,218
Ensembl chr15:92,259,763...92,260,203 		JBrowse link
G LOC297756 ribosomal protein S8-like involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:3,392,846...3,393,523
Ensembl chr 5:3,389,210...3,393,500 		JBrowse link
G Ngdn neuroguidin involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr15:28,489,950...28,497,286
Ensembl chr15:28,490,040...28,519,654 		JBrowse link
G Nol10 nucleolar protein 10 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:40,144,217...40,225,353
Ensembl chr 6:40,144,235...40,225,353 		JBrowse link
G Pwp2 PWP2, small subunit processome component involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr20:10,499,332...10,512,965
Ensembl chr20:10,499,363...10,513,640 		JBrowse link
G Rps16 ribosomal protein S16 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:83,643,066...83,646,056
Ensembl chr 1:83,643,130...83,646,206 		JBrowse link
G Rps16l1 ribosomal protein S16 like 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:21,494,155...21,494,684
Ensembl chr 3:21,494,203...21,494,676 		JBrowse link
G Rps19 ribosomal protein S19 involved_in ISO (PMID:16990592), (PMID:17053056) RGD PMID:16990592 PMID:17053056 NCBI chr 1:80,480,718...80,486,511
Ensembl chr 1:80,480,951...80,486,508 		JBrowse link
G Rps8 ribosomal protein S8 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:130,630,362...130,632,932
Ensembl chr 5:130,629,716...130,633,268 		JBrowse link
G Rps8-ps17 ribosomal protein S8, pseudogene 17 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:98,586,109...98,586,784
Ensembl chr 3:98,586,108...98,586,808 		JBrowse link
G Rps8l1 ribosomal protein S8 like 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr17:83,759,360...83,760,027
Ensembl chr17:83,759,369...83,760,019 		JBrowse link
G Rrp36 ribosomal RNA processing 36 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 9:14,308,956...14,316,959
Ensembl chr 9:14,308,982...14,316,110 		JBrowse link
G Rsl1d1 ribosomal L1 domain containing 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:4,424,868...4,436,753
Ensembl chr10:4,397,821...4,439,593 		JBrowse link
G Slx9 SLX9 ribosome biogenesis factor involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr20:11,114,632...11,147,532
Ensembl chr20:11,114,589...11,147,521 		JBrowse link
G Tsr1 TSR1, ribosome maturation factor involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:59,760,420...59,771,868
Ensembl chr10:59,760,409...59,771,864 		JBrowse link
G Tsr2 TSR2, ribosome maturation factor involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:20,064,102...20,072,673
Ensembl chr  X:20,064,103...20,072,620 		JBrowse link
G Utp25 UTP25 small subunit processome component involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr13:104,630,390...104,651,681
Ensembl chr13:104,630,391...104,651,662 		JBrowse link
G Utp3 UTP3, small subunit processome component involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr14:19,515,716...19,517,370
Ensembl chr14:19,515,669...19,517,396 		JBrowse link
G Utp4 UTP4 small subunit processome component involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr19:34,790,962...34,820,558
Ensembl chr19:34,792,457...34,820,550 		JBrowse link
G Utp6 UTP6 small subunit processome component involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:64,897,321...64,927,997
Ensembl chr10:64,897,328...64,927,997 		JBrowse link
G Wdr43 WD repeat domain 43 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:23,845,499...23,884,846
Ensembl chr 6:23,845,499...23,884,846 		JBrowse link
G Wdr46 WD repeat domain 46 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr20:4,937,845...4,945,796
Ensembl chr20:4,937,847...4,946,535 		JBrowse link
endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abt1 activator of basal transcription 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr17:41,699,151...41,701,253
Ensembl chr17:41,699,147...41,701,259 		JBrowse link
G Fcf1 Fcf1 rRNA-processing protein acts_upstream_of_or_within ISO (PMID:25190460) RGD PMID:25190460 NCBI chr 6:104,617,780...104,629,643
Ensembl chr 6:104,617,770...104,629,643 		JBrowse link
G Nop9 NOP9 nucleolar protein involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr15:29,243,853...29,252,220
Ensembl chr15:29,243,862...29,252,220 		JBrowse link
G Rcl1 RNA terminal phosphate cyclase-like 1 acts_upstream_of_or_within ISO (PMID:25190460) RGD PMID:25190460 NCBI chr 1:226,824,561...226,869,046
Ensembl chr 1:226,824,534...226,902,315 		JBrowse link
G Tbl3 transducin (beta)-like 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:13,726,127...13,731,340
Ensembl chr10:13,726,129...13,731,372 		JBrowse link
G Utp23 UTP23, small subunit processome component acts_upstream_of_or_within ISO (PMID:25190460) RGD PMID:25190460 NCBI chr 7:83,185,187...83,196,652
Ensembl chr 7:83,189,656...83,196,655 		JBrowse link
endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abt1 activator of basal transcription 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr17:41,699,151...41,701,253
Ensembl chr17:41,699,147...41,701,259 		JBrowse link
G AC135409.1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr 8:46,606,877...46,607,131 JBrowse link
G Fcf1 Fcf1 rRNA-processing protein acts_upstream_of_or_within ISO (PMID:25190460) RGD PMID:25190460 NCBI chr 6:104,617,780...104,629,643
Ensembl chr 6:104,617,770...104,629,643 		JBrowse link
G LOC100359505 40S ribosomal protein S21-like involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:71,304,098...71,304,447
Ensembl chr  X:71,304,145...71,304,396 		JBrowse link
G Nop9 NOP9 nucleolar protein involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr15:29,243,853...29,252,220
Ensembl chr15:29,243,862...29,252,220 		JBrowse link
G Rcl1 RNA terminal phosphate cyclase-like 1 acts_upstream_of_or_within ISO (PMID:25190460) RGD PMID:25190460 NCBI chr 1:226,824,561...226,869,046
Ensembl chr 1:226,824,534...226,902,315 		JBrowse link
G Rpp40 ribonuclease P/MRP subunit p40 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr17:28,947,752...28,956,788
Ensembl chr17:28,947,734...28,956,788 		JBrowse link
G Rps21 ribosomal protein S21 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:167,346,437...167,347,459
Ensembl chr 3:167,346,201...167,347,470 		JBrowse link
G Rrs1 ribosome biogenesis regulator 1 homolog involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:9,733,486...9,735,119
Ensembl chr 5:9,733,091...9,735,140 		JBrowse link
endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AC135409.1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr 8:46,606,877...46,607,131 JBrowse link
G LOC100359505 40S ribosomal protein S21-like involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:71,304,098...71,304,447
Ensembl chr  X:71,304,145...71,304,396 		JBrowse link
G Rps21 ribosomal protein S21 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:167,346,437...167,347,459
Ensembl chr 3:167,346,201...167,347,470 		JBrowse link
endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abt1 activator of basal transcription 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr17:41,699,151...41,701,253
Ensembl chr17:41,699,147...41,701,259 		JBrowse link
G Nop9 NOP9 nucleolar protein involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr15:29,243,853...29,252,220
Ensembl chr15:29,243,862...29,252,220 		JBrowse link
G Tbl3 transducin (beta)-like 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:13,726,127...13,731,340
Ensembl chr10:13,726,129...13,731,372 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19692
    metabolic process 11456
      primary metabolic process 10015
        RNA processing 954
          rRNA processing 234
            maturation of SSU-rRNA 60
              maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 40
                endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 6
                endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 9
                endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 3
                endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 3
Path 2
Term Annotations click to browse term
  biological_process 19692
    metabolic process 11456
      organic substance metabolic process 10970
        organic cyclic compound metabolic process 6031
          nucleobase-containing compound metabolic process 5524
            nucleic acid metabolic process 4949
              nucleic acid biosynthetic process 4203
                RNA biosynthetic process 4090
                  RNA processing 954
                    rRNA processing 234
                      maturation of SSU-rRNA 60
                        maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 40
                          endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 6
                          endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 9
                          endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 3
                          endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 3
paths to the root