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Gene: Utp4 (UTP4 small subunit processome component) Rattus norvegicus
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Symbol: Utp4
Name: UTP4 small subunit processome component
Description: Predicted to be involved in maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) and regulation of transcription, DNA-templated. Predicted to localize to several cellular components, including the 90S preribosome; nucleolus; and small-subunit processome. Human ortholog(s) of this gene implicated in cholestasis and primary biliary cirrhosis. Orthologous to human UTP4 (UTP4 small subunit processome component); PARTICIPATES IN ribosome biogenesis pathway; INTERACTS WITH 2,4-dinitrotoluene; 2,6-dinitrotoluene; 4-amino-2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: Cirh1a; cirhin; cirrhosis, autosomal recessive 1A; cirrhosis, autosomal recessive 1A (cirhin); cirrhosis, autosomal recessive 1A (human); LOC291987; MGC95114; Naic; Teg-292; testis-expressed gene 292; Tex292; U3 small nucleolar RNA-associated protein 4 homolog; UTP4 small subunit (SSU) processome component
Orthologs:
Homo sapiens (human) : UTP4 (UTP4 small subunit processome component)  HGNC  Alliance
Mus musculus (house mouse) : Utp4 (UTP4 small subunit processome component)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Utp4 (UTP4 small subunit processome component)
Pan paniscus (bonobo/pygmy chimpanzee) : UTP4 (UTP4 small subunit processome component)
Canis lupus familiaris (dog) : UTP4 (UTP4 small subunit processome component)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Utp4 (UTP4 small subunit processome component)
Sus scrofa (pig) : UTP4 (UTP4 small subunit processome component)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01939,087,995 - 39,116,124 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1939,087,990 - 39,116,125 (+)Ensembl
Rnor_5.01949,952,283 - 49,980,522 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41936,742,206 - 36,770,285 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11936,747,086 - 36,775,165 (+)NCBI
Celera1934,216,482 - 34,244,580 (+)NCBICelera
Cytogenetic Map19q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Utp4
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1311341
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2019-08-20
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.