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ONTOLOGY REPORT - ANNOTATIONS

Term:pigmentation
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Accession:GO:0043473 term browser browse the term
Definition:The accumulation of pigment in an organism, tissue or cell, either by increased deposition or by increased number of cells.
Synonyms:only_in_taxon: NCBITaxon:131567 ! cellular organisms


show annotations for term's descendants           Sort by:
pigmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ap3b1 adaptor related protein complex 3 subunit beta 1 acts_upstream_of_or_within ISO (PMID:9931340) RGD PMID:9931340 NCBI chr 2:25,600,069...25,800,937
Ensembl chr 2:25,600,040...25,800,935 		JBrowse link
G Arcn1 archain 1 acts_upstream_of_or_within ISO MGI:2671790 (PMID:20502676) RGD PMID:20502676 NCBI chr 8:45,057,617...45,082,224
Ensembl chr 8:45,057,619...45,082,247 		JBrowse link
G Asip agouti signaling protein acts_upstream_of_or_within ISO MGI:1856798 (PMID:17247639) RGD PMID:17247639 NCBI chr 3:143,473,584...143,561,170
Ensembl chr 3:143,555,696...143,561,171 		JBrowse link
G Atp7a ATPase copper transporting alpha acts_upstream_of_or_within ISO MGI:1856096|MGI:1856097|MGI:1856098|MGI:1856099|MGI:1856100|MGI:1856101|MGI:1856322|MGI:1856323|MGI:1856324|MGI:1856466|MGI:1856479|MGI:2447843|MGI:3588774 (PMID:16338116), (PMID:1752214), (PMID:2473662), (PMID:4561716), (PMID:4670054), (PMID:4858102) RGD PMID:1752214 PMID:2473662 PMID:4561716 PMID:4670054 PMID:4858102 More... MGI:61157 MGI:61250 MGI:61313 MGI:63033 MGI:63057 MGI:64387 MGI:72704 NCBI chr  X:71,094,144...71,201,550
Ensembl chr  X:71,094,202...71,198,354 		JBrowse link
G Atrn attractin involved_in
acts_upstream_of_or_within		 IMP
ISO
IEA		 PMID:11209055
MGI:1856081|MGI:1856082 (PMID:18064672)
GO_REF:0000107		 RGD
Ensembl		 PMID:18064672 PMID:11209055 GO_REF:0000107 MGI:48643, RGD:67998 NCBI chr 3:118,110,320...118,244,326
Ensembl chr 3:118,110,229...118,244,322 		JBrowse link
G Bcl2 BCL2, apoptosis regulator involved_in ISO (MGI:63353|PMID:8402909) RGD PMID:8402909 MGI:63353 NCBI chr13:22,689,783...22,853,920
Ensembl chr13:22,684,989...22,853,743
Ensembl chr13:22,684,989...22,853,743 		JBrowse link
G Bloc1s3 biogenesis of lysosomal organelles complex-1, subunit 3 involved_in
acts_upstream_of_or_within		 ISO (PMID:16385460)
MGI:1857021 (PMID:15265785), (PMID:2513223), (PMID:4031470), (PMID:7089489)		 RGD PMID:2513223 PMID:4031470 PMID:7089489 PMID:15265785 PMID:16385460 NCBI chr 1:79,155,873...79,158,247
Ensembl chr 1:79,155,693...79,158,505 		JBrowse link
G Bloc1s6 biogenesis of lysosomal organelles complex 1 subunit 6 acts_upstream_of_or_within ISO MGI:1856982 (PMID:2379821), (PMID:7089489) RGD PMID:2379821 PMID:7089489 NCBI chr 3:109,816,397...109,826,528
Ensembl chr 3:109,816,366...109,828,308 		JBrowse link
G Cd63 Cd63 molecule involved_in ISO (MGI:5569478|PMID:21962903) RGD PMID:21962903 MGI:5569478 NCBI chr 7:1,325,108...1,340,447
Ensembl chr 7:1,325,103...1,399,178 		JBrowse link
G Cited1 Cbp/p300-interacting transactivator with Glu/Asp-rich carboxy-terminal domain 1 involved_in ISO
ISS		 (PMID:8901575)
(MGI:4412464|PMID:11434569), (MGI:83705|PMID:8901575)
GO_REF:0000024		 RGD
UniProt		 PMID:8901575 PMID:11434569 GO_REF:0000024 MGI:4412464 MGI:83705 NCBI chr  X:67,350,376...67,355,072
Ensembl chr  X:67,350,373...67,355,162 		JBrowse link
G Dct dopachrome tautomerase acts_upstream_of_or_within ISO MGI:1856379 (PMID:1537334) RGD PMID:1537334 NCBI chr15:95,062,006...95,100,863
Ensembl chr15:95,062,003...95,100,836 		JBrowse link
G Dock7 dedicator of cytokinesis 7 acts_upstream_of_or_within ISO MGI:1856946 (PMID:2379821) RGD PMID:2379821 NCBI chr 5:113,599,371...113,782,871
Ensembl chr 5:113,600,198...113,782,813 		JBrowse link
G Drd2 dopamine receptor D2 acts_upstream_of_or_within ISO MGI:3576789 (PMID:9140068) RGD PMID:9140068 NCBI chr 8:49,708,927...49,772,876
Ensembl chr 8:49,708,927...49,772,875 		JBrowse link
G Eda ectodysplasin-A acts_upstream_of_or_within ISO MGI:1856197|MGI:1858152 (PMID:4561716) RGD PMID:4561716 MGI:65389 NCBI chr  X:65,078,454...65,480,172
Ensembl chr  X:65,078,673...65,480,172 		JBrowse link
G Edar ectodysplasin-A receptor acts_upstream_of_or_within ISO MGI:1856017 (PMID:544312) RGD PMID:544312 NCBI chr20:26,587,836...26,666,543
Ensembl chr20:26,587,839...26,666,494 		JBrowse link
G Ednrb endothelin receptor type B acts_upstream_of_or_within IMP
ISO		 homozygous sl mutation results in white coat color, occasionally with pigmented spots on head or hip
MGI:1856148 (PMID:2379821)		 RGD PMID:2379821 PMID:8570650 RGD:628515 NCBI chr15:80,640,839...80,672,115
Ensembl chr15:80,643,043...80,672,115 		JBrowse link
G En1 engrailed homeobox 1 acts_upstream_of_or_within ISO MGI:1857163 (PMID:9362463) RGD PMID:9362463 NCBI chr13:31,750,892...31,756,477
Ensembl chr13:31,751,545...31,755,943 		JBrowse link
G Fig4 FIG4 phosphoinositide 5-phosphatase acts_upstream_of_or_within ISO MGI:3716838 (PMID:17572665), (PMID:22028665) RGD PMID:17572665 PMID:22028665 NCBI chr20:44,600,603...44,724,047
Ensembl chr20:44,600,603...44,723,844 		JBrowse link
G Hps1 HPS1, biogenesis of lysosomal organelles complex 3 subunit 1 acts_upstream_of_or_within ISO MGI:1856712 (PMID:2379821), (PMID:7089489) RGD PMID:2379821 PMID:7089489 NCBI chr 1:241,551,180...241,577,292
Ensembl chr 1:241,551,175...241,577,268 		JBrowse link
G Hps3 HPS3, biogenesis of lysosomal organelles complex 2 subunit 1 acts_upstream_of_or_within ISO MGI:1856707 (PMID:2379821) RGD PMID:2379821 NCBI chr 2:102,484,574...102,527,580
Ensembl chr 2:102,484,574...102,526,047 		JBrowse link
G Hps5 HPS5, biogenesis of lysosomal organelles complex 2 subunit 2 acts_upstream_of_or_within ISO MGI:1856147 (PMID:2379821) RGD PMID:2379821 NCBI chr 1:97,281,626...97,320,945
Ensembl chr 1:97,247,598...97,321,019 		JBrowse link
G Hps6 HPS6, biogenesis of lysosomal organelles complex 2 subunit 3 acts_upstream_of_or_within ISO MGI:1856147|MGI:1856544 (PMID:15265785), (PMID:17247639), (PMID:2379821) RGD PMID:2379821 PMID:15265785 PMID:17247639 NCBI chr 1:244,853,256...244,855,865
Ensembl chr 1:244,853,194...244,855,883 		JBrowse link
G Kit KIT proto-oncogene receptor tyrosine kinase involved_in
acts_upstream_of_or_within		 ISO (MGI:3040777|PMID:15067126)
MGI:97306 (PMID:10620616)		 RGD PMID:10620616 PMID:15067126 MGI:3040777 NCBI chr14:32,547,459...32,624,694
Ensembl chr14:32,548,877...32,624,652 		JBrowse link
G Krt76 keratin 76 acts_upstream_of_or_within ISO MGI:4363117 (PMID:25340873) RGD PMID:25340873 NCBI chr 7:133,016,990...133,025,475
Ensembl chr 7:133,016,992...133,025,496 		JBrowse link
G Lyst lysosomal trafficking regulator acts_upstream_of_or_within
involved_in		 IMP
ISO		 MGI:1855968|MGI:2660913 (PMID:13943454), (PMID:2513223), (PMID:4031470), (PMID:7089489)
(PMID:10648412)		 RGD PMID:2513223 PMID:4031470 PMID:7089489 PMID:10648412 PMID:13943454 More... RGD:1302441 NCBI chr17:86,241,384...86,443,501
Ensembl chr17:86,241,384...86,443,480 		JBrowse link
G Mc1r melanocortin 1 receptor acts_upstream_of_or_within ISO MGI:1856029 RGD MGI:87265 NCBI chr19:51,452,448...51,455,375
Ensembl chr19:51,453,239...51,454,192 		JBrowse link
G Mfsd12 major facilitator superfamily domain containing 12 acts_upstream_of_or_within ISO MGI:1856888 RGD MGI:60250 NCBI chr 7:8,345,171...8,354,050
Ensembl chr 7:8,347,314...8,353,988 		JBrowse link
G Mitf melanocyte inducing transcription factor acts_upstream_of_or_within ISO MGI:1856088|MGI:1856095|MGI:88138 (PMID:12086670), (PMID:2379821) RGD PMID:2379821 PMID:12086670 NCBI chr 4:130,409,020...130,621,145
Ensembl chr 4:130,409,217...130,621,145 		JBrowse link
G Mlph melanophilin acts_upstream_of_or_within ISO MGI:1856674 (PMID:17247639), (PMID:2379821) RGD PMID:2379821 PMID:17247639 NCBI chr 9:91,507,410...91,542,984
Ensembl chr 9:91,507,591...91,542,983 		JBrowse link
G Mreg melanoregulin acts_upstream_of_or_within ISO MGI:1856847 (PMID:2379821), (PMID:3141922), (PMID:7828830) RGD PMID:2379821 PMID:3141922 PMID:7828830 NCBI chr 9:73,786,727...73,842,081
Ensembl chr 9:73,787,267...73,842,087 		JBrowse link
G Myc MYC proto-oncogene, bHLH transcription factor acts_upstream_of_or_within ISO MGI:2178233|MGI:2386570 (PMID:17523175) RGD PMID:17523175 NCBI chr 7:93,593,705...93,598,633
Ensembl chr 7:93,593,705...93,598,630 		JBrowse link
G Myo5a myosin VA acts_upstream_of_or_within IMP
ISO		 PMID:10920234
MGI:1856004|MGI:1856005|MGI:1856008|MGI:1856407|MGI:1856847|MGI:1858058|MGI:1858059|MGI:1858060|MGI:1858061|MGI:1858062|MGI:1858063|MGI:1858064|MGI:1858065|MGI:1858066|MGI:1860204|MGI:1891626|MGI:1891639|MGI:2658702|MGI:3583341|MGI:5641704 (PMID:13880466), (PMID:17247639), (PMID:2379821), (PMID:24721909), (PMID:25340873), (PMID:3141922), (PMID:3422417), (PMID:6098826), (PMID:6305507), (PMID:7774591), (PMID:7828830), (PMID:9560408), (PMID:9560409)		 RGD PMID:2379821 PMID:3141922 PMID:3422417 PMID:6098826 PMID:6305507 More... MGI:61192, RGD:61493 NCBI chr 8:75,811,985...75,980,049
Ensembl chr 8:75,812,412...75,975,918 		JBrowse link
G Mysm1 myb-like, SWIRM and MPN domains 1 acts_upstream_of_or_within ISO MGI:4362924 (PMID:25340873) RGD PMID:25340873 NCBI chr 5:109,761,345...109,826,652
Ensembl chr 5:109,776,286...109,819,967 		JBrowse link
G Nf1 neurofibromin 1 involved_in
acts_upstream_of_or_within		 ISS
ISO
IEA		 GO_REF:0000024
MGI:1857444|MGI:96677 (PMID:10594763), (PMID:10620616), (PMID:10844550)
GO_REF:0000107		 HGNC-UCL
RGD
Ensembl		 PMID:10594763 PMID:10620616 PMID:10844550 GO_REF:0000024 GO_REF:0000107 NCBI chr10:64,306,027...64,539,112
Ensembl chr10:64,306,301...64,536,658 		JBrowse link
G Oca2 OCA2 melanosomal transmembrane protein acts_upstream_of_or_within ISO MGI:1856114 (PMID:13943454), (PMID:17247639), (PMID:2379821), (PMID:9548375) RGD PMID:2379821 PMID:9548375 PMID:13943454 PMID:17247639 NCBI chr 1:107,116,278...107,446,093
Ensembl chr 1:107,116,278...107,446,074 		JBrowse link
G Rab27a RAB27A, member RAS oncogene family acts_upstream_of_or_within ISO MGI:1856656 (PMID:2379821) RGD PMID:2379821 NCBI chr 8:73,782,730...73,836,630
Ensembl chr 8:73,782,694...73,847,829 		JBrowse link
G Rack1 receptor for activated C kinase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:5660834 (PMID:23212600)		 Ensembl
RGD		 PMID:23212600 GO_REF:0000107 NCBI chr10:33,169,415...33,174,896
Ensembl chr10:33,169,169...33,174,975 		JBrowse link
G Recql4 RecQ like helicase 4 acts_upstream_of_or_within ISO MGI:3045113 (PMID:15703196) RGD PMID:15703196 NCBI chr 7:108,423,453...108,430,790
Ensembl chr 7:108,423,455...108,430,619 		JBrowse link
G Snai2 snail family transcriptional repressor 2 involved_in ISO (PMID:12444107)
(MGI:2446014|PMID:12444107)		 RGD PMID:12444107 MGI:2446014 NCBI chr11:86,182,788...86,186,203
Ensembl chr11:86,181,909...86,186,200 		JBrowse link
G Sparc secreted protein acidic and cysteine rich acts_upstream_of_or_within ISO MGI:4432869 (PMID:25340873) RGD PMID:25340873 NCBI chr10:39,516,394...39,538,252
Ensembl chr10:39,516,406...39,538,396 		JBrowse link
G Szt2 SZT2 subunit of KICSTOR complex acts_upstream_of_or_within ISO MGI:4353996 (PMID:19624305) RGD PMID:19624305 NCBI chr 5:131,897,250...131,943,953
Ensembl chr 5:131,897,275...131,943,904 		JBrowse link
G Tyr tyrosinase involved_in
acts_upstream_of_or_within		 IMP
IBA
ISO		 GO_REF:0000033
MGI:1855976|MGI:1855978 (PMID:13880466), (PMID:17247639), (PMID:9548375)		 GO_Central
RGD		 PMID:9548375 PMID:13880466 PMID:17247639 PMID:15760344 GO_REF:0000033, RGD:1599687 NCBI chr 1:141,115,036...141,210,207
Ensembl chr 1:141,115,036...141,210,207 		JBrowse link
G Tyrp1 tyrosinase-related protein 1 acts_upstream_of_or_within ISO MGI:1855960|MGI:1855962 (PMID:13880466), (PMID:17247639), (PMID:2379821) RGD PMID:2379821 PMID:13880466 PMID:17247639 NCBI chr 5:95,280,982...95,299,516
Ensembl chr 5:95,280,982...95,299,516 		JBrowse link
G Vangl1 VANGL planar cell polarity protein 1 acts_upstream_of_or_within ISO MGI:4365105 (PMID:25340873) RGD PMID:25340873 NCBI chr 2:189,586,681...189,637,609
Ensembl chr 2:189,589,229...189,637,619 		JBrowse link
G Vps33a VPS33A core subunit of CORVET and HOPS complexes acts_upstream_of_or_within ISO MGI:1856687 (PMID:4777306) RGD PMID:4777306 NCBI chr12:33,024,596...33,051,399
Ensembl chr12:33,024,650...33,051,393 		JBrowse link
background adaptation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gnat1 G protein subunit alpha transducin 1 acts_upstream_of_or_within ISO MGI:2152779 (PMID:24373883) RGD PMID:24373883 NCBI chr 8:108,350,935...108,355,671
Ensembl chr 8:108,350,935...108,355,671 		JBrowse link
G Gnat2 G protein subunit alpha transducin 2 acts_upstream_of_or_within ISO MGI:3588845 (PMID:24373883) RGD PMID:24373883 NCBI chr 2:195,726,371...195,735,866
Ensembl chr 2:195,726,762...195,735,866 		JBrowse link
cellular pigmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pomc proopiomelanocortin involved_in ISO
IEA		 (PMID:9620771)
GO_REF:0000107		 RGD
Ensembl		 PMID:9620771 GO_REF:0000107 NCBI chr 6:26,939,844...26,945,666
Ensembl chr 6:26,939,837...26,945,664 		JBrowse link
developmental pigmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcl2 BCL2, apoptosis regulator acts_upstream_of_or_within ISO MGI:1197519|MGI:2156165 (PMID:11709185), (PMID:8170972) RGD PMID:8170972 PMID:11709185 NCBI chr13:22,689,783...22,853,920
Ensembl chr13:22,684,989...22,853,743
Ensembl chr13:22,684,989...22,853,743 		JBrowse link
G Bcl2l11 Bcl2-like 11 acts_upstream_of_or_within ISO MGI:88138 (PMID:11709185) RGD PMID:11709185 NCBI chr 3:115,366,783...115,404,068
Ensembl chr 3:115,366,646...115,404,068 		JBrowse link
G Bloc1s3 biogenesis of lysosomal organelles complex-1, subunit 3 acts_upstream_of_or_within ISO MGI:1857021 (PMID:15102850), (PMID:7203014) RGD PMID:7203014 PMID:15102850 NCBI chr 1:79,155,873...79,158,247
Ensembl chr 1:79,155,693...79,158,505 		JBrowse link
G Bloc1s5 biogenesis of lysosomal organelles complex 1 subunit 5 acts_upstream_of_or_within ISO MGI:1856106 (PMID:11912185) RGD PMID:11912185 NCBI chr17:26,171,965...26,197,276
Ensembl chr17:26,172,018...26,197,251 		JBrowse link
G Dct dopachrome tautomerase acts_upstream_of_or_within ISO MGI:1856379 (PMID:15060160) RGD PMID:15060160 NCBI chr15:95,062,006...95,100,863
Ensembl chr15:95,062,003...95,100,836 		JBrowse link
G Ednra endothelin receptor type A involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr19:30,233,540...30,303,727
Ensembl chr19:30,233,571...30,297,049 		JBrowse link
G Ednrb endothelin receptor type B involved_in
acts_upstream_of_or_within		 IBA
ISO		 GO_REF:0000033
MGI:1856149 (PMID:15322542)		 GO_Central
RGD		 PMID:15322542 GO_REF:0000033 NCBI chr15:80,640,839...80,672,115
Ensembl chr15:80,643,043...80,672,115 		JBrowse link
G Gna11 G protein subunit alpha 11 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:2151589 (PMID:15322542)		 Ensembl
RGD		 PMID:15322542 GO_REF:0000107 NCBI chr 7:8,163,520...8,177,863
Ensembl chr 7:8,162,750...8,179,812 		JBrowse link
G Gnaq G protein subunit alpha q involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:2151661 (PMID:15322542)		 Ensembl
RGD		 PMID:15322542 GO_REF:0000107 NCBI chr 1:213,425,631...213,671,947
Ensembl chr 1:213,424,465...213,667,672 		JBrowse link
G Hps5 HPS5, biogenesis of lysosomal organelles complex 2 subunit 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:97,281,626...97,320,945
Ensembl chr 1:97,247,598...97,321,019 		JBrowse link
G Kit KIT proto-oncogene receptor tyrosine kinase acts_upstream_of_or_within ISO MGI:1856161|MGI:1856164|MGI:1856266|MGI:2449782|MGI:2660628 (PMID:15322542), (PMID:18454205) RGD PMID:15322542 PMID:18454205 NCBI chr14:32,547,459...32,624,694
Ensembl chr14:32,548,877...32,624,652 		JBrowse link
G Mreg melanoregulin acts_upstream_of_or_within ISO MGI:1856847 (PMID:15550542) RGD PMID:15550542 NCBI chr 9:73,786,727...73,842,081
Ensembl chr 9:73,787,267...73,842,087 		JBrowse link
G Myo5a myosin VA acts_upstream_of_or_within ISO MGI:1856004 (PMID:15550542) RGD PMID:15550542 NCBI chr 8:75,811,985...75,980,049
Ensembl chr 8:75,812,412...75,975,918 		JBrowse link
G Oca2 OCA2 melanosomal transmembrane protein acts_upstream_of_or_within ISO MGI:1856123 (PMID:11756244) RGD PMID:11756244 NCBI chr 1:107,116,278...107,446,093
Ensembl chr 1:107,116,278...107,446,074 		JBrowse link
G Pax3 paired box 3 acts_upstream_of_or_within ISO MGI:1856173 (PMID:15322542) RGD PMID:15322542 NCBI chr 9:79,567,455...79,664,042
Ensembl chr 9:79,568,634...79,664,042 		JBrowse link
G Saa4 serum amyloid A4 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:97,247,580...97,251,882 JBrowse link
G Slc45a2 solute carrier family 45, member 2 involved_in
acts_upstream_of_or_within		 ISO (MGI:7338895|PMID:35469906)
MGI:1856227|MGI:1856581|MGI:1857540 (PMID:11700328)		 RGD PMID:11700328 PMID:35469906 MGI:7338895 NCBI chr 2:59,963,599...59,996,408
Ensembl chr 2:59,963,706...59,996,317 		JBrowse link
G Zeb2 zinc finger E-box binding homeobox 2 involved_in ISO (MGI:5574413|PMID:24769727) RGD PMID:24769727 MGI:5574413 NCBI chr 3:29,214,581...29,344,890
Ensembl chr 3:29,218,301...29,345,157 		JBrowse link
G Zic2 Zic family member 2 acts_upstream_of_or_within ISO MGI:1861983 (PMID:10932191) RGD PMID:10932191 NCBI chr15:99,576,697...99,581,522
Ensembl chr15:99,576,697...99,581,522 		JBrowse link
endosome to melanosome transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ankrd27 ankyrin repeat domain 27 involved_in ISO (MGI:5607516|PMID:21187829) RGD PMID:21187829 MGI:5607516 NCBI chr 1:88,251,216...88,303,615
Ensembl chr 1:88,251,226...88,303,615 		JBrowse link
G Ap1g1 adaptor related protein complex 1 subunit gamma 1 involved_in ISO (PMID:22511774) RGD PMID:22511774 NCBI chr19:37,744,633...37,831,134
Ensembl chr19:37,744,633...37,829,167 		JBrowse link
G Ap1m1 adaptor related protein complex 1 subunit mu 1 involved_in ISO
IEA		 (PMID:19841138)
GO_REF:0000107		 RGD
Ensembl		 PMID:19841138 GO_REF:0000107 NCBI chr16:17,586,886...17,602,410
Ensembl chr16:17,584,730...17,602,403 		JBrowse link
G Ap3d1 adaptor related protein complex 3 subunit delta 1 involved_in ISO (PMID:22511774) RGD PMID:22511774 NCBI chr 7:8,970,249...9,005,651
Ensembl chr 7:8,970,291...9,005,643 		JBrowse link
G Bloc1s3 biogenesis of lysosomal organelles complex-1, subunit 3 involved_in ISO (PMID:17182842) RGD PMID:17182842 NCBI chr 1:79,155,873...79,158,247
Ensembl chr 1:79,155,693...79,158,505 		JBrowse link
G Bloc1s5 biogenesis of lysosomal organelles complex 1 subunit 5 involved_in ISO (PMID:17182842) RGD PMID:17182842 NCBI chr17:26,171,965...26,197,276
Ensembl chr17:26,172,018...26,197,251 		JBrowse link
G Bloc1s6 biogenesis of lysosomal organelles complex 1 subunit 6 involved_in ISS
ISO		 GO_REF:0000024
(PMID:17182842)		 UniProt
RGD		 PMID:17182842 GO_REF:0000024 NCBI chr 3:109,816,397...109,826,528
Ensembl chr 3:109,816,366...109,828,308 		JBrowse link
G Cd63 Cd63 molecule involved_in ISO
IEA
ISS		 (PMID:21962903)
GO_REF:0000107
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:21962903 GO_REF:0000024 GO_REF:0000107 NCBI chr 7:1,325,108...1,340,447
Ensembl chr 7:1,325,103...1,399,178 		JBrowse link
G Rab32 RAB32, member RAS oncogene family involved_in ISO (PMID:22511774) RGD PMID:22511774 NCBI chr 1:4,946,193...4,961,003
Ensembl chr 1:4,945,036...4,960,934 		JBrowse link
G Rab38 RAB38, member RAS oncogene family involved_in ISO (PMID:22511774) RGD PMID:22511774 NCBI chr 1:142,182,566...142,262,923
Ensembl chr 1:142,182,556...142,262,924 		JBrowse link
erythrophore differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sod2 superoxide dismutase 2 acts_upstream_of_or_within ISO MGI:1857344 (PMID:15205258) RGD PMID:15205258 NCBI chr 1:47,638,318...47,645,163
Ensembl chr 1:47,636,528...47,645,189 		JBrowse link
establishment of melanosome localization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rab17 RAB17, member RAS oncogene family involved_in ISO (MGI:5487521|PMID:21291502) RGD PMID:21291502 MGI:5487521 NCBI chr 9:91,552,924...91,566,759
Ensembl chr 9:91,553,464...91,566,451 		JBrowse link
eye pigmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp6ap2 ATPase H+ transporting accessory protein 2 involved_in ISO
IEA		 (PMID:20093472)
GO_REF:0000107		 RGD
Ensembl		 PMID:20093472 GO_REF:0000107 NCBI chr  X:10,183,983...10,210,948
Ensembl chr  X:10,183,068...10,210,918 		JBrowse link
G Hps1 HPS1, biogenesis of lysosomal organelles complex 3 subunit 1 acts_upstream_of_or_within ISO (PMID:21052544) RGD PMID:21052544 NCBI chr 1:241,551,180...241,577,292
Ensembl chr 1:241,551,175...241,577,268 		JBrowse link
G Vhl von Hippel-Lindau tumor suppressor acts_upstream_of_or_within ISO MGI:2136645 (PMID:22627278) RGD PMID:22627278 NCBI chr 4:146,772,483...146,779,376
Ensembl chr 4:146,772,468...146,779,377 		JBrowse link
melanocyte differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adamts20 ADAM metallopeptidase with thrombospondin type 1 motif, 20 acts_upstream_of ISO MGI:1916320|MGI:3766915 (PMID:18454205) RGD PMID:18454205 NCBI chr 7:125,396,227...125,528,020
Ensembl chr 7:125,397,734...125,527,777 		JBrowse link
G Adamts9 ADAM metallopeptidase with thrombospondin type 1 motif, 9 acts_upstream_of ISO MGI:2660628 (PMID:18454205) RGD PMID:18454205 NCBI chr 4:125,290,633...125,462,988
Ensembl chr 4:125,291,490...125,462,929 		JBrowse link
G Bcl2 BCL2, apoptosis regulator involved_in
acts_upstream_of
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:2158305 (PMID:16427619)
MGI:104554|MGI:2156165|MGI:2158305 (PMID:11709185), (PMID:12086670), (PMID:8758925)		 Ensembl
RGD		 PMID:8758925 PMID:11709185 PMID:12086670 PMID:16427619 GO_REF:0000107 NCBI chr13:22,689,783...22,853,920
Ensembl chr13:22,684,989...22,853,743
Ensembl chr13:22,684,989...22,853,743 		JBrowse link
G Bloc1s6 biogenesis of lysosomal organelles complex 1 subunit 6 acts_upstream_of_or_within ISO MGI:1856982 (PMID:2379821) RGD PMID:2379821 NCBI chr 3:109,816,397...109,826,528
Ensembl chr 3:109,816,366...109,828,308 		JBrowse link
G Cited1 Cbp/p300-interacting transactivator with Glu/Asp-rich carboxy-terminal domain 1 involved_in ISO
IBA
ISS		 (PMID:8901575)
GO_REF:0000033
(MGI:83705|PMID:8901575)
GO_REF:0000024		 RGD
GO_Central
UniProt		 PMID:8901575 GO_REF:0000024 GO_REF:0000033 MGI:83705 NCBI chr  X:67,350,376...67,355,072
Ensembl chr  X:67,350,373...67,355,162 		JBrowse link
G Edn3 endothelin 3 acts_upstream_of_or_within ISO (PMID:9012511) RGD PMID:9012511 NCBI chr 3:163,562,307...163,586,636
Ensembl chr 3:163,562,520...163,585,093 		JBrowse link
G Ednrb endothelin receptor type B acts_upstream_of_or_within IDA
ISO		 MGI:1856148 (PMID:2379821), (PMID:9012511) RGD PMID:2379821 PMID:9012511 PMID:11709437 RGD:628459 NCBI chr15:80,640,839...80,672,115
Ensembl chr15:80,643,043...80,672,115 		JBrowse link
G Enpp1 ectonucleotide pyrophosphatase/phosphodiesterase 1 involved_in ISO
ISS		 (PMID:28964717)
GO_REF:0000024		 RGD
UniProt		 PMID:28964717 GO_REF:0000024 NCBI chr 1:20,698,746...20,763,741
Ensembl chr 1:20,698,764...20,763,715 		JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO MGI:3720956 (PMID:18397875) RGD PMID:18397875 NCBI chr17:49,438,567...49,709,712
Ensembl chr17:49,438,567...49,709,712 		JBrowse link
G Hps1 HPS1, biogenesis of lysosomal organelles complex 3 subunit 1 acts_upstream_of_or_within ISO MGI:1856712 (PMID:11836498) RGD PMID:11836498 NCBI chr 1:241,551,180...241,577,292
Ensembl chr 1:241,551,175...241,577,268 		JBrowse link
G Hps4 HPS4, biogenesis of lysosomal organelles complex 3 subunit 2 acts_upstream_of_or_within ISO MGI:1856931 (PMID:11836498) RGD PMID:11836498 NCBI chr12:44,264,037...44,294,791
Ensembl chr12:44,264,037...44,294,632 		JBrowse link
G Kit KIT proto-oncogene receptor tyrosine kinase involved_in ISO (MGI:3612335|PMID:15768389) RGD PMID:15768389 MGI:3612335 NCBI chr14:32,547,459...32,624,694
Ensembl chr14:32,548,877...32,624,652 		JBrowse link
G Lrmda leucine rich melanocyte differentiation associated involved_in ISO (PMID:23395477) RGD PMID:23395477 NCBI chr15:1,223,098...2,284,764
Ensembl chr15:1,225,710...2,284,749 		JBrowse link
G Mef2c myocyte enhancer factor 2C involved_in ISS
ISO		 GO_REF:0000024
(MGI:5049797|PMID:21610032)		 UniProt
RGD		 PMID:21610032 GO_REF:0000024 MGI:5049797 NCBI chr 2:13,973,299...14,136,065
Ensembl chr 2:13,993,438...14,132,880 		JBrowse link
G Mitf melanocyte inducing transcription factor involved_in
acts_upstream_of_or_within		 IEA
ISO
IBA		 GO_REF:0000107
MGI:1856088|MGI:1856095|MGI:88138 (PMID:12086670), (PMID:2379821)
GO_REF:0000033		 Ensembl
RGD
GO_Central		 PMID:2379821 PMID:12086670 GO_REF:0000033 GO_REF:0000107 NCBI chr 4:130,409,020...130,621,145
Ensembl chr 4:130,409,217...130,621,145 		JBrowse link
G Mlph melanophilin acts_upstream_of_or_within ISO MGI:1856674 (PMID:11504925), (PMID:2379821) RGD PMID:2379821 PMID:11504925 NCBI chr 9:91,507,410...91,542,984
Ensembl chr 9:91,507,591...91,542,983 		JBrowse link
G Mreg melanoregulin involved_in
acts_upstream_of_or_within		 IBA
ISO		 GO_REF:0000033
MGI:1856847 (PMID:2379821), (PMID:7828830)		 GO_Central
RGD		 PMID:2379821 PMID:7828830 GO_REF:0000033 NCBI chr 9:73,786,727...73,842,081
Ensembl chr 9:73,787,267...73,842,087 		JBrowse link
G Myo5a myosin VA acts_upstream_of_or_within ISO MGI:1856004 (PMID:1996138), (PMID:2379821), (PMID:7828830) RGD PMID:1996138 PMID:2379821 PMID:7828830 NCBI chr 8:75,811,985...75,980,049
Ensembl chr 8:75,812,412...75,975,918 		JBrowse link
G Oca2 OCA2 melanosomal transmembrane protein involved_in
acts_upstream_of_or_within		 IBA
ISO		 GO_REF:0000033
MGI:1856114 (PMID:2379821)		 GO_Central
RGD		 PMID:2379821 GO_REF:0000033 NCBI chr 1:107,116,278...107,446,093
Ensembl chr 1:107,116,278...107,446,074 		JBrowse link
G Olr59 olfactory receptor 59 involved_in IEA
ISS
ISO		 GO_REF:0000107
GO_REF:0000024
(PMID:27226631)		 Ensembl
UniProt
RGD		 PMID:27226631 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:157,193,051...157,227,707
Ensembl chr 1:157,193,080...157,211,179 		JBrowse link
G Rab27a RAB27A, member RAS oncogene family acts_upstream_of_or_within ISO MGI:1856656 (PMID:2379821) RGD PMID:2379821 MGI:52947 NCBI chr 8:73,782,730...73,836,630
Ensembl chr 8:73,782,694...73,847,829 		JBrowse link
G Slc24a5 solute carrier family 24 member 5 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:112,319,349...112,338,889
Ensembl chr 3:112,319,308...112,339,231 		JBrowse link
G Sox10 SRY-box transcription factor 10 acts_upstream_of_or_within ISO MGI:3701358 (PMID:16790476) RGD PMID:16790476 NCBI chr 7:110,725,274...110,734,651
Ensembl chr 7:110,725,274...110,735,544 		JBrowse link
G Tyrp1 tyrosinase-related protein 1 involved_in
acts_upstream_of_or_within		 IBA
ISO		 GO_REF:0000033
MGI:1855962 (PMID:2379821)		 GO_Central
RGD		 PMID:2379821 GO_REF:0000033 NCBI chr 5:95,280,982...95,299,516
Ensembl chr 5:95,280,982...95,299,516 		JBrowse link
melanosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcb6 ATP binding cassette subfamily B member 6 involved_in ISO
ISS		 (PMID:29940187)
GO_REF:0000024		 RGD
UniProt		 PMID:29940187 GO_REF:0000024 NCBI chr 9:76,668,554...76,677,263
Ensembl chr 9:76,668,554...76,676,924 		JBrowse link
G Hps1 HPS1, biogenesis of lysosomal organelles complex 3 subunit 1 involved_in ISO
IBA		 (PMID:23084991)
GO_REF:0000033		 RGD
GO_Central		 PMID:23084991 GO_REF:0000033 NCBI chr 1:241,551,180...241,577,292
Ensembl chr 1:241,551,175...241,577,268 		JBrowse link
G Hps4 HPS4, biogenesis of lysosomal organelles complex 3 subunit 2 involved_in ISO
IBA		 (PMID:23084991)
GO_REF:0000033		 RGD
GO_Central		 PMID:23084991 GO_REF:0000033 NCBI chr12:44,264,037...44,294,791
Ensembl chr12:44,264,037...44,294,632 		JBrowse link
G Rab32 RAB32, member RAS oncogene family involved_in ISO (PMID:22511774), (PMID:23084991) RGD PMID:22511774 PMID:23084991 NCBI chr 1:4,946,193...4,961,003
Ensembl chr 1:4,945,036...4,960,934 		JBrowse link
G Rab38 RAB38, member RAS oncogene family involved_in ISO (PMID:22511774), (PMID:23084991) RGD PMID:22511774 PMID:23084991 NCBI chr 1:142,182,566...142,262,923
Ensembl chr 1:142,182,556...142,262,924 		JBrowse link
melanosome localization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gpr143 G protein-coupled receptor 143 involved_in ISO (PMID:19717472) RGD PMID:19717472 NCBI chr  X:22,002,914...22,027,720
Ensembl chr  X:22,002,914...22,027,715 		JBrowse link
G Mlph melanophilin acts_upstream_of_or_within ISO MGI:1856674 (PMID:11886590), (PMID:11887186), (PMID:14730011) RGD PMID:11886590 PMID:11887186 PMID:14730011 NCBI chr 9:91,507,410...91,542,984
Ensembl chr 9:91,507,591...91,542,983 		JBrowse link
G Mreg melanoregulin involved_in ISO (MGI:5447858|PMID:22940130) RGD PMID:22940130 MGI:5447858 NCBI chr 9:73,786,727...73,842,081
Ensembl chr 9:73,787,267...73,842,087 		JBrowse link
G Myo5a myosin VA acts_upstream_of_or_within ISO MGI:1856004 (PMID:11266470), (PMID:14730011), (PMID:8962090) RGD PMID:8962090 PMID:11266470 PMID:14730011 NCBI chr 8:75,811,985...75,980,049
Ensembl chr 8:75,812,412...75,975,918 		JBrowse link
G Rab27a RAB27A, member RAS oncogene family involved_in ISO (PMID:15357836) RGD PMID:15357836 NCBI chr 8:73,782,730...73,836,630
Ensembl chr 8:73,782,694...73,847,829 		JBrowse link
G Vps33a VPS33A core subunit of CORVET and HOPS complexes involved_in ISO
IEA		 (PMID:15790593)
GO_REF:0000107		 RGD
Ensembl		 PMID:15790593 GO_REF:0000107 NCBI chr12:33,024,596...33,051,399
Ensembl chr12:33,024,650...33,051,393 		JBrowse link
G Vps33b VPS33B, late endosome and lysosome associated involved_in ISO (PMID:15790593) RGD PMID:15790593 NCBI chr 1:134,223,967...134,247,232
Ensembl chr 1:134,223,949...134,246,970 		JBrowse link
melanosome organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ap1m1 adaptor related protein complex 1 subunit mu 1 involved_in ISO
IEA		 (PMID:19841138)
GO_REF:0000107		 RGD
Ensembl		 PMID:19841138 GO_REF:0000107 NCBI chr16:17,586,886...17,602,410
Ensembl chr16:17,584,730...17,602,403 		JBrowse link
G Ap3b1 adaptor related protein complex 3 subunit beta 1 involved_in
acts_upstream_of_or_within		 ISO (PMID:11452004), (PMID:19841138)
(PMID:9931340)		 RGD PMID:9931340 PMID:11452004 PMID:19841138 NCBI chr 2:25,600,069...25,800,937
Ensembl chr 2:25,600,040...25,800,935 		JBrowse link
G Apoe apolipoprotein E involved_in ISO
ISS
IEA		 (PMID:26387950)
(MGI:6830356|PMID:26387950)
GO_REF:0000024
GO_REF:0000107		 RGD
UniProt
Ensembl		 PMID:26387950 GO_REF:0000024 GO_REF:0000107 MGI:6830356 NCBI chr 1:79,353,924...79,357,852
Ensembl chr 1:79,353,916...79,357,932 		JBrowse link
G Asip agouti signaling protein involved_in
acts_upstream_of_or_within		 IEA
ISO
IBA		 GO_REF:0000107
MGI:1855937 (PMID:9548375)
GO_REF:0000033		 Ensembl
RGD
GO_Central		 PMID:9548375 GO_REF:0000033 GO_REF:0000107 NCBI chr 3:143,473,584...143,561,170
Ensembl chr 3:143,555,696...143,561,171 		JBrowse link
G Bace2 beta-secretase 2 involved_in ISO (PMID:23754390)
(MGI:5495053|PMID:23754390)		 RGD PMID:23754390 MGI:5495053 NCBI chr11:36,707,447...36,789,550
Ensembl chr11:36,707,458...36,789,546 		JBrowse link
G Bloc1s3 biogenesis of lysosomal organelles complex-1, subunit 3 acts_upstream_of_or_within ISO MGI:1857021 (PMID:15265785) RGD PMID:15265785 NCBI chr 1:79,155,873...79,158,247
Ensembl chr 1:79,155,693...79,158,505 		JBrowse link
G Bloc1s4 biogenesis of lysosomal organelles complex 1 subunit 4 acts_upstream_of_or_within ISO MGI:2449643 (PMID:11110696) RGD PMID:11110696 NCBI chr14:74,043,025...74,044,325
Ensembl chr14:74,043,015...74,044,531 		JBrowse link
G Gpr143 G protein-coupled receptor 143 involved_in ISO
IBA		 (PMID:19717472)
GO_REF:0000033		 RGD
GO_Central		 PMID:19717472 GO_REF:0000033 NCBI chr  X:22,002,914...22,027,720
Ensembl chr  X:22,002,914...22,027,715 		JBrowse link
G Kif13a kinesin family member 13A involved_in ISO (PMID:19841138) RGD PMID:19841138 NCBI chr17:17,766,597...17,948,517
Ensembl chr17:17,766,597...17,943,615 		JBrowse link
G Lyst lysosomal trafficking regulator acts_upstream_of_or_within ISO MGI:1855968|MGI:3620573 (PMID:16518687), (PMID:4634048) RGD PMID:4634048 PMID:16518687 NCBI chr17:86,241,384...86,443,501
Ensembl chr17:86,241,384...86,443,480 		JBrowse link
G Pikfyve phosphoinositide kinase, FYVE-type zinc finger containing involved_in ISO
IBA		 (PMID:29584722)
GO_REF:0000033
(MGI:6152906|PMID:29584722)		 RGD
GO_Central		 PMID:29584722 GO_REF:0000033 MGI:6152906 NCBI chr 9:66,563,747...66,657,873
Ensembl chr 9:66,563,727...66,657,868 		JBrowse link
G Pmel premelanosome protein involved_in ISO
IBA		 (PMID:11694580)
GO_REF:0000033		 RGD
GO_Central		 PMID:11694580 GO_REF:0000033 NCBI chr 7:1,138,202...1,148,735
Ensembl chr 7:1,138,586...1,148,746 		JBrowse link
G Rab29 RAB29, member RAS oncogene family involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr13:43,307,757...43,313,420
Ensembl chr13:43,307,775...43,313,417 		JBrowse link
G Rab38 RAB38, member RAS oncogene family involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:142,182,566...142,262,923
Ensembl chr 1:142,182,556...142,262,924 		JBrowse link
G Shroom2 shroom family member 2 involved_in ISS
ISO		 GO_REF:0000024
(MGI:3710716|PMID:16987870)		 UniProt
RGD		 PMID:16987870 GO_REF:0000024 MGI:3710716 NCBI chr  X:21,812,469...21,983,724
Ensembl chr  X:21,812,469...21,984,153 		JBrowse link
G Tyrp1 tyrosinase-related protein 1 involved_in
acts_upstream_of_or_within		 IBA
ISO		 GO_REF:0000033
MGI:1855960 (PMID:9548375)		 GO_Central
RGD		 PMID:9548375 GO_REF:0000033 NCBI chr 5:95,280,982...95,299,516
Ensembl chr 5:95,280,982...95,299,516 		JBrowse link
melanosome transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Asip agouti signaling protein involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:1855937 (PMID:9548375)		 Ensembl
RGD		 PMID:9548375 GO_REF:0000107 NCBI chr 3:143,473,584...143,561,170
Ensembl chr 3:143,555,696...143,561,171 		JBrowse link
G Bloc1s3 biogenesis of lysosomal organelles complex-1, subunit 3 involved_in ISO (PMID:17182842) RGD PMID:17182842 NCBI chr 1:79,155,873...79,158,247
Ensembl chr 1:79,155,693...79,158,505 		JBrowse link
G Bloc1s5 biogenesis of lysosomal organelles complex 1 subunit 5 involved_in ISO (PMID:17182842) RGD PMID:17182842 NCBI chr17:26,171,965...26,197,276
Ensembl chr17:26,172,018...26,197,251 		JBrowse link
G Bloc1s6 biogenesis of lysosomal organelles complex 1 subunit 6 involved_in ISO
ISS		 (PMID:17182842)
GO_REF:0000024		 RGD
UniProt		 PMID:17182842 GO_REF:0000024 NCBI chr 3:109,816,397...109,826,528
Ensembl chr 3:109,816,366...109,828,308 		JBrowse link
G Dctn1 dynactin subunit 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
(PMID:22275436)		 Ensembl
RGD		 PMID:22275436 GO_REF:0000107 NCBI chr 4:115,671,024...115,703,824
Ensembl chr 4:115,661,638...115,703,815 		JBrowse link
G Dctn2 dynactin subunit 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
(PMID:22275436)		 Ensembl
RGD		 PMID:22275436 GO_REF:0000107 NCBI chr 7:63,092,061...63,107,560
Ensembl chr 7:63,092,057...63,108,543 		JBrowse link
G Gpr143 G protein-coupled receptor 143 involved_in ISO (PMID:19717472) RGD PMID:19717472 NCBI chr  X:22,002,914...22,027,720
Ensembl chr  X:22,002,914...22,027,715 		JBrowse link
G Map2k1 mitogen activated protein kinase kinase 1 IDA positive regulation of bidirectional melanosome transport along microtubules RGD PMID:15753041 RGD:2293208 NCBI chr 8:64,683,449...64,754,900
Ensembl chr 8:64,683,449...64,755,147 		JBrowse link
G Mreg melanoregulin involved_in
acts_upstream_of_or_within		 IBA
ISO		 GO_REF:0000033
(PMID:22275436)		 GO_Central
RGD		 PMID:22275436 GO_REF:0000033 NCBI chr 9:73,786,727...73,842,081
Ensembl chr 9:73,787,267...73,842,087 		JBrowse link
G Myo5a myosin VA acts_upstream_of_or_within ISO MGI:1856004|MGI:1858077 (PMID:11266473), (PMID:24721909), (PMID:9133672), (PMID:9548375) RGD PMID:9133672 PMID:9548375 PMID:11266473 PMID:24721909 NCBI chr 8:75,811,985...75,980,049
Ensembl chr 8:75,812,412...75,975,918 		JBrowse link
G Rab11a RAB11a, member RAS oncogene family involved_in ISS
IBA
IEA
ISO		 GO_REF:0000024
GO_REF:0000033
GO_REF:0000107
(MGI:5487521|PMID:21291502)		 UniProt
GO_Central
Ensembl
RGD		 PMID:21291502 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 MGI:5487521 NCBI chr 8:65,223,698...65,246,461
Ensembl chr 8:65,222,949...65,246,525 		JBrowse link
G Rab11b RAB11B, member RAS oncogene family involved_in ISS
ISO		 GO_REF:0000024
(MGI:5487521|PMID:21291502)		 UniProt
RGD		 PMID:21291502 GO_REF:0000024 MGI:5487521 NCBI chr 7:14,521,448...14,534,589
Ensembl chr 7:14,521,368...14,534,593 		JBrowse link
G Rab17 RAB17, member RAS oncogene family involved_in ISO (MGI:5487521|PMID:21291502) RGD PMID:21291502 MGI:5487521 NCBI chr 9:91,552,924...91,566,759
Ensembl chr 9:91,553,464...91,566,451 		JBrowse link
G Rab1a RAB1A, member RAS oncogene family involved_in ISO (MGI:5526918|PMID:22854043) RGD PMID:22854043 MGI:5526918 NCBI chr14:94,422,219...94,448,799
Ensembl chr14:94,415,275...94,448,248 		JBrowse link
G Rab27a RAB27A, member RAS oncogene family acts_upstream_of_or_within ISO MGI:1856656 (PMID:11266473) RGD PMID:11266473 NCBI chr 8:73,782,730...73,836,630
Ensembl chr 8:73,782,694...73,847,829 		JBrowse link
negative regulation of developmental pigmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tpcn2 two pore segment channel 2 involved_in ISO (PMID:27140606)
(MGI:6219928|PMID:27231233)		 RGD PMID:27140606 PMID:27231233 MGI:6219928 NCBI chr 1:200,416,538...200,446,252
Ensembl chr 1:200,416,540...200,446,236 		JBrowse link
negative regulation of eye pigmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ihh Indian hedgehog signaling molecule acts_upstream_of_or_within ISO MGI:1934258 (PMID:17464332) RGD PMID:17464332 NCBI chr 9:76,504,315...76,510,532
Ensembl chr 9:76,504,315...76,510,532 		JBrowse link
pigment cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adamtsl4 ADAMTS-like 4 acts_upstream_of_or_within ISO (PMID:26405179) RGD PMID:26405179 NCBI chr 2:183,235,634...183,247,091
Ensembl chr 2:183,235,646...183,246,848 		JBrowse link
pigment cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cd63 Cd63 molecule involved_in ISO (MGI:5569478|PMID:21962903) RGD PMID:21962903 MGI:5569478 NCBI chr 7:1,325,108...1,340,447
Ensembl chr 7:1,325,103...1,399,178 		JBrowse link
pigment granule localization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Myo7a myosin VIIA acts_upstream_of_or_within ISO MGI:1856716|MGI:2155422 (PMID:14609561), (PMID:14978221), (PMID:15572405) RGD PMID:14609561 PMID:14978221 PMID:15572405 NCBI chr 1:152,342,611...152,414,171
Ensembl chr 1:152,344,448...152,414,157 		JBrowse link
G Rab27a RAB27A, member RAS oncogene family acts_upstream_of_or_within ISO MGI:1856656 (PMID:14978221), (PMID:15572405) RGD PMID:14978221 PMID:15572405 NCBI chr 8:73,782,730...73,836,630
Ensembl chr 8:73,782,694...73,847,829 		JBrowse link
pigment granule maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cd63 Cd63 molecule involved_in ISO
ISS		 (PMID:21962903)
GO_REF:0000024		 RGD
UniProt		 PMID:21962903 GO_REF:0000024 NCBI chr 7:1,325,108...1,340,447
Ensembl chr 7:1,325,103...1,399,178 		JBrowse link
pigment granule organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcl2 BCL2, apoptosis regulator involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:2158305 (PMID:8758925)		 Ensembl
RGD		 PMID:8758925 GO_REF:0000107 NCBI chr13:22,689,783...22,853,920
Ensembl chr13:22,684,989...22,853,743
Ensembl chr13:22,684,989...22,853,743 		JBrowse link
G Lyst lysosomal trafficking regulator acts_upstream_of_or_within ISO MGI:1855968 (PMID:1278263) RGD PMID:1278263 NCBI chr17:86,241,384...86,443,501
Ensembl chr17:86,241,384...86,443,480 		JBrowse link
pigment granule transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Myo7a myosin VIIA acts_upstream_of_or_within ISO MGI:1856716|MGI:2155422 (PMID:15572405), (PMID:9620764) RGD PMID:9620764 PMID:15572405 NCBI chr 1:152,342,611...152,414,171
Ensembl chr 1:152,344,448...152,414,157 		JBrowse link
G Rab27a RAB27A, member RAS oncogene family acts_upstream_of_or_within ISO MGI:1856656 (PMID:15572405) RGD PMID:15572405 NCBI chr 8:73,782,730...73,836,630
Ensembl chr 8:73,782,694...73,847,829 		JBrowse link
pigment metabolic process involved in pigmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mfsd12 major facilitator superfamily domain containing 12 involved_in ISO
IBA		 (PMID:33208952)
GO_REF:0000033
(MGI:6492453|PMID:33208952)
(PMID:31117290)		 RGD
GO_Central		 PMID:31117290 PMID:33208952 GO_REF:0000033 MGI:6492453 NCBI chr 7:8,345,171...8,354,050
Ensembl chr 7:8,347,314...8,353,988 		JBrowse link
G Tbx2 T-box transcription factor 2 acts_upstream_of_negative_effect ISO (MGI:6814712|PMID:26971330) RGD PMID:26971330 MGI:6814712 NCBI chr10:70,679,670...70,688,868
Ensembl chr10:70,679,518...70,688,529 		JBrowse link
positive regulation of developmental pigmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bax BCL2 associated X, apoptosis regulator acts_upstream_of_or_within ISO MGI:99702 (PMID:9241272) RGD PMID:9241272 NCBI chr 1:95,940,001...95,945,407
Ensembl chr 1:95,938,808...95,945,368 		JBrowse link
G Bcl2 BCL2, apoptosis regulator acts_upstream_of_or_within ISO MGI:88138 (PMID:9241272) RGD PMID:9241272 NCBI chr13:22,689,783...22,853,920
Ensembl chr13:22,684,989...22,853,743
Ensembl chr13:22,684,989...22,853,743 		JBrowse link
positive regulation of melanocyte differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adamts20 ADAM metallopeptidase with thrombospondin type 1 motif, 20 acts_upstream_of_or_within ISO MGI:1916320|MGI:3766915 (PMID:18454205) RGD PMID:18454205 NCBI chr 7:125,396,227...125,528,020
Ensembl chr 7:125,397,734...125,527,777 		JBrowse link
G Adamts9 ADAM metallopeptidase with thrombospondin type 1 motif, 9 acts_upstream_of_or_within ISO MGI:2660628 (PMID:18454205) RGD PMID:18454205 NCBI chr 4:125,290,633...125,462,988
Ensembl chr 4:125,291,490...125,462,929 		JBrowse link
G Bcl2 BCL2, apoptosis regulator involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:2158305 (PMID:16427619)		 Ensembl
RGD		 PMID:16427619 GO_REF:0000107 NCBI chr13:22,689,783...22,853,920
Ensembl chr13:22,684,989...22,853,743
Ensembl chr13:22,684,989...22,853,743 		JBrowse link
G Kitlg KIT ligand acts_upstream_of_or_within ISO (PMID:16427619) RGD PMID:16427619 NCBI chr 7:34,896,075...34,977,215
Ensembl chr 7:34,896,053...34,977,214 		JBrowse link
G Zeb2 zinc finger E-box binding homeobox 2 involved_in ISO (MGI:5574413|PMID:24769727) RGD PMID:24769727 MGI:5574413 NCBI chr 3:29,214,581...29,344,890
Ensembl chr 3:29,218,301...29,345,157 		JBrowse link
positive regulation of melanosome transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdh3 cadherin 3 involved_in ISO (PMID:23334344) RGD PMID:23334344 NCBI chr19:34,393,596...34,444,084
Ensembl chr19:34,393,727...34,444,084 		JBrowse link
positive regulation of pigment cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bloc1s5 biogenesis of lysosomal organelles complex 1 subunit 5 involved_in ISO (PMID:17182842) RGD PMID:17182842 NCBI chr17:26,171,965...26,197,276
Ensembl chr17:26,172,018...26,197,251 		JBrowse link
G Bloc1s6 biogenesis of lysosomal organelles complex 1 subunit 6 involved_in ISS
ISO		 GO_REF:0000024
(PMID:17182842)		 UniProt
RGD		 PMID:17182842 GO_REF:0000024 NCBI chr 3:109,816,397...109,826,528
Ensembl chr 3:109,816,366...109,828,308 		JBrowse link
regulation of developmental pigmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adamts20 ADAM metallopeptidase with thrombospondin type 1 motif, 20 acts_upstream_of_or_within ISO MGI:1916320|MGI:2675831|MGI:3766915|MGI:96677 (PMID:14138974), (PMID:18454205) RGD PMID:14138974 PMID:18454205 NCBI chr 7:125,396,227...125,528,020
Ensembl chr 7:125,397,734...125,527,777 		JBrowse link
G Adamts9 ADAM metallopeptidase with thrombospondin type 1 motif, 9 acts_upstream_of_or_within ISO MGI:2660628 (PMID:18454205) RGD PMID:18454205 NCBI chr 4:125,290,633...125,462,988
Ensembl chr 4:125,291,490...125,462,929 		JBrowse link
G Bcl2 BCL2, apoptosis regulator acts_upstream_of_or_within ISO MGI:1197519 (PMID:15818405) RGD PMID:15818405 NCBI chr13:22,689,783...22,853,920
Ensembl chr13:22,684,989...22,853,743
Ensembl chr13:22,684,989...22,853,743 		JBrowse link
G Bcl2l11 Bcl2-like 11 acts_upstream_of_or_within ISO MGI:88138 (PMID:15818405) RGD PMID:15818405 NCBI chr 3:115,366,783...115,404,068
Ensembl chr 3:115,366,646...115,404,068 		JBrowse link
G Edn3 endothelin 3 acts_upstream_of_or_within ISO MGI:1856392 (PMID:14138974) RGD PMID:14138974 NCBI chr 3:163,562,307...163,586,636
Ensembl chr 3:163,562,520...163,585,093 		JBrowse link
G Vps33a VPS33A core subunit of CORVET and HOPS complexes involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:1856687 (PMID:12538872)		 Ensembl
RGD		 PMID:12538872 GO_REF:0000107 NCBI chr12:33,024,596...33,051,399
Ensembl chr12:33,024,650...33,051,393 		JBrowse link
regulation of eye pigmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Spns2 SPNS lysolipid transporter 2, sphingosine-1-phosphate acts_upstream_of_or_within ISO MGI:4460276 (PMID:22664872) RGD PMID:22664872 NCBI chr10:57,067,348...57,105,969
Ensembl chr10:57,066,897...57,105,957 		JBrowse link
regulation of melanocyte differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gna11 G protein subunit alpha 11 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:2682213 (PMID:15322542)		 Ensembl
RGD		 PMID:15322542 GO_REF:0000107 NCBI chr 7:8,163,520...8,177,863
Ensembl chr 7:8,162,750...8,179,812 		JBrowse link
G Gnaq G protein subunit alpha q involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:2681766 (PMID:15322542)		 Ensembl
RGD		 PMID:15322542 GO_REF:0000107 NCBI chr 1:213,425,631...213,671,947
Ensembl chr 1:213,424,465...213,667,672 		JBrowse link
regulation of melanosome organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gpr143 G protein-coupled receptor 143 involved_in ISO (MGI:3813974|PMID:18697795) RGD PMID:18697795 MGI:3813974 NCBI chr  X:22,002,914...22,027,720
Ensembl chr  X:22,002,914...22,027,715 		JBrowse link
G Zeb2 zinc finger E-box binding homeobox 2 involved_in ISO (MGI:5574413|PMID:24769727) RGD PMID:24769727 MGI:5574413 NCBI chr 3:29,214,581...29,344,890
Ensembl chr 3:29,218,301...29,345,157 		JBrowse link
regulation of melanosome transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gpr143 G protein-coupled receptor 143 involved_in ISO (MGI:3813974|PMID:18697795) RGD PMID:18697795 MGI:3813974 NCBI chr  X:22,002,914...22,027,720
Ensembl chr  X:22,002,914...22,027,715 		JBrowse link
rhodopsin metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Grk3 G protein-coupled receptor kinase 3 IMP RGD PMID:17573483 RGD:5685371 NCBI chr12:43,624,778...43,735,375
Ensembl chr12:43,624,897...43,731,262 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19692
    pigmentation 106
      cellular pigmentation + 44
      developmental pigmentation + 55
      ocellus pigmentation + 0
      pigment accumulation + 10
      pigment metabolic process involved in pigmentation + 3
      regulation of pigmentation + 16
paths to the root