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Pathways
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PATHWAY ONTOLOGY - ANNOTATIONS

The Pathway Ontology (PW), is currently being developed at the Rat Genome Database. For more information about this vocabulary, please see Petri et al. The rat genome database pathway portal. Database (Oxford). 2011 Apr 8;2011:bar010. Print 2011 or contact us (https://rgd.mcw.edu/rgdweb/contact/contactus.html).
Term:glycogen biosynthetic pathway
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Accession:PW:0000532 term browser browse the term
Definition:Those metabolic reactions leading to the biosynthesis of glycogen, a highly branched polysaccharide. Glycogen is the storage form of glucose in the cell; it represents an energy reserve that can be mobilized when and where there is a need for glucose.
Synonyms:related_synonym: Glycogen synthesis;   glycogen biosynthetic process;   glycogenesis
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show annotations for term's descendants           Sort by:
glycogen biosynthetic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gbe1 1,4-alpha-glucan branching enzyme 1 IDA RGD PMID:6449198 RGD:1642743 NCBI chr11:22,181,194...22,446,640
Ensembl chr11:22,181,103...22,446,638 		JBrowse link
G Gck glucokinase IDA RGD PMID:15138155 RGD:1582633 NCBI chr14:84,999,019...85,041,098
Ensembl chr14:84,999,020...85,040,949 		JBrowse link
G Gsk3a glycogen synthase kinase 3 alpha ISO RGD PMID:17530463 RGD:2306093 NCBI chr 1:89,943,669...89,953,514
Ensembl chr 1:89,943,669...89,953,593 		JBrowse link
G Gsk3b glycogen synthase kinase 3 beta ISO RGD PMID:17530463 RGD:2306093 NCBI chr11:76,004,502...76,154,665
Ensembl chr11:76,009,507...76,153,249 		JBrowse link
G Gyg1 glycogenin 1 IDA RGD PMID:8224611 PMID:10710493 RGD:2303736, RGD:2304070 NCBI chr 2:104,540,927...104,583,038
Ensembl chr 2:104,540,533...104,582,818 		JBrowse link
G Gys1 glycogen synthase 1 ISO
IDA 		RGD PMID:12297270 PMID:6449198 RGD:2304106, RGD:1642743 NCBI chr 1:105,051,916...105,071,763
Ensembl chr 1:105,051,961...105,072,419 		JBrowse link
G Gys2 glycogen synthase 2 IDA
ISO 		RGD PMID:15138155 PMID:12297270 PMID:6449198 RGD:1582633, RGD:2304106, RGD:1642743 NCBI chr 4:177,096,063...177,137,236
Ensembl chr 4:177,096,063...177,137,236 		JBrowse link
G Pgm1 phosphoglucomutase 1 ISO RGD PMID:9549096 RGD:2304188 NCBI chr 5:119,710,734...119,770,159
Ensembl chr 5:119,710,737...119,770,159 		JBrowse link
G Pgm2 phosphoglucomutase 2 ISO RGD PMID:9549096 RGD:2304188 NCBI chr14:44,519,906...44,553,420
Ensembl chr14:44,519,906...44,553,770 		JBrowse link
G Pgm3 phosphoglucomutase 3 ISO RGD PMID:9549096 RGD:2304188 NCBI chr 8:96,398,331...96,416,045
Ensembl chr 8:96,398,269...96,416,021 		JBrowse link
G Ppp1ca protein phosphatase 1 catalytic subunit alpha ISO
IDA 		RGD PMID:14715909 PMID:7720853 RGD:2304325, RGD:2304267 NCBI chr 1:210,914,576...210,918,193
Ensembl chr 1:210,914,567...210,918,193 		JBrowse link
G Ppp1cb protein phosphatase 1 catalytic subunit beta ISO
IDA 		RGD PMID:14715909 PMID:7720853 RGD:2304325, RGD:2304267 NCBI chr 6:29,681,099...29,712,835
Ensembl chr 6:29,681,100...29,712,924 		JBrowse link
G Ppp1cc protein phosphatase 1 catalytic subunit gamma ISO RGD PMID:14715909 RGD:2304325 NCBI chr12:40,043,822...40,061,301
Ensembl chr12:40,043,822...40,061,341 		JBrowse link
G Ppp1r3a protein phosphatase 1, regulatory subunit 3A ISO RGD PMID:14715909 RGD:2304325 NCBI chr 4:43,905,648...43,946,236
Ensembl chr 4:43,905,648...43,946,236 		JBrowse link
G Ppp1r3b protein phosphatase 1, regulatory subunit 3B ISO
IDA 		RGD PMID:14715909 PMID:7720853 PMID:11716774 RGD:2304325, RGD:2304267, RGD:2306167 NCBI chr16:63,533,318...63,545,683
Ensembl chr16:63,532,842...63,549,997 		JBrowse link
G Ppp1r3c protein phosphatase 1, regulatory subunit 3C IDA RGD PMID:11716774 RGD:2306167 NCBI chr 1:243,873,524...243,878,527
Ensembl chr 1:243,871,704...243,878,835 		JBrowse link
G Ppp1r3d protein phosphatase 1, regulatory subunit 3D IDA RGD PMID:11716774 RGD:2306167 NCBI chr 3:185,880,087...185,883,158
Ensembl chr 3:185,876,709...185,883,703 		JBrowse link
G Ppp1r3e protein phosphatase 1, regulatory subunit 3E IDA RGD PMID:15752363 RGD:2306166 NCBI chr15:32,318,435...32,319,595 JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  pathway 6091
    classic metabolic pathway 1853
      carbohydrate metabolic pathway 526
        glycogen metabolic pathway 31
          glycogen biosynthetic pathway 18
            altered glycogen biosynthetic pathway 0
Path 2
Term Annotations click to browse term
  pathway 6091
    regulatory pathway 3864
      homeostasis pathway 1772
        organic chemical homeostasis pathway 767
          glucose homeostasis pathway 344
            glucose utilization pathway 121
              glucose storage pathway 18
                glycogen biosynthetic pathway 18
                  altered glycogen biosynthetic pathway 0
paths to the root