Trafd1 (TRAF type zinc finger domain containing 1) - Rat Genome Database

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Gene: Trafd1 (TRAF type zinc finger domain containing 1) Rattus norvegicus
Analyze
Symbol: Trafd1
Name: TRAF type zinc finger domain containing 1
RGD ID: 620171
Description: Predicted to enable zinc ion binding activity. Involved in response to cytokine. Predicted to be active in mitochondrion. Orthologous to human TRAFD1 (TRAF-type zinc finger domain containing 1); INTERACTS WITH 1-naphthyl isothiocyanate; 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-diaminodiphenylmethane.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Fln29; FLN29 gene product; TRAF-type zinc finger domain-containing protein 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: Trafd1em1Mcwi  
Genetic Models: SS-Trafd1em1Mcwi
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81240,826,251 - 40,840,169 (+)NCBIGRCr8
mRatBN7.21235,165,606 - 35,179,525 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1235,165,606 - 35,179,525 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1236,339,582 - 36,353,644 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01236,950,791 - 36,964,849 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01236,003,227 - 36,017,285 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01240,695,520 - 40,709,438 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1240,695,520 - 40,709,462 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01242,562,635 - 42,576,553 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41236,301,824 - 36,315,741 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11236,175,415 - 36,177,595 (+)NCBI
Celera1236,831,217 - 36,845,023 (+)NCBICelera
Cytogenetic Map12q16NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
1-naphthyl isothiocyanate  (EXP)
17beta-estradiol  (ISO)
2,3',4,4',5-Pentachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-hydroxypropanoic acid  (ISO)
4,4'-diaminodiphenylmethane  (EXP)
4,4'-sulfonyldiphenol  (EXP)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
adefovir pivoxil  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
ammonium chloride  (EXP)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
azoxystrobin  (EXP)
benzo[a]pyrene  (ISO)
bisphenol A  (EXP)
bisphenol F  (EXP)
bortezomib  (ISO)
C60 fullerene  (EXP)
cadmium dichloride  (ISO)
caffeine  (ISO)
capsaicin  (EXP)
carbon nanotube  (ISO)
chlordecone  (ISO)
chlorpromazine  (EXP)
chlorpyrifos  (EXP)
chromium(6+)  (ISO)
cidofovir anhydrous  (ISO)
cisplatin  (ISO)
clodronic acid  (ISO)
clofibrate  (ISO)
copper(II) chloride  (ISO)
coumarin  (ISO)
cyclosporin A  (EXP)
DDE  (ISO)
diethylstilbestrol  (ISO)
dioxygen  (ISO)
doxorubicin  (ISO)
elemental selenium  (ISO)
enzyme inhibitor  (ISO)
ethyl methanesulfonate  (ISO)
fenofibrate  (EXP)
flutamide  (EXP)
formaldehyde  (ISO)
FR900359  (ISO)
gentamycin  (EXP)
glyphosate  (EXP)
ifosfamide  (ISO)
imidacloprid  (EXP)
ivermectin  (ISO)
metformin  (EXP)
methyl methanesulfonate  (ISO)
nickel atom  (ISO)
oxaliplatin  (EXP)
paracetamol  (EXP,ISO)
pentachlorophenol  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
propiconazole  (ISO)
rac-lactic acid  (ISO)
selenium atom  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sulforaphane  (ISO)
sunitinib  (ISO)
temozolomide  (ISO)
thiabendazole  (EXP)
thioacetamide  (EXP)
thiram  (ISO)
titanium dioxide  (ISO)
topotecan  (EXP)
triphenyl phosphate  (ISO)
trovafloxacin  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vitamin E  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Cytokine-induced down-regulation of zfm1/splicing factor-1 promotes smooth muscle cell proliferation. Cattaruzza M, etal., J Biol Chem 2002 Feb 22;277(8):6582-9.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
4. GOA pipeline RGD automated data pipeline
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Comprehensive gene review and curation RGD comprehensive gene curation
7. Information Derived from GenBank Report RGD, Sept. 2003
Additional References at PubMed
PMID:12477932   PMID:15057822   PMID:15489334   PMID:18849341  


Genomics

Comparative Map Data
Trafd1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81240,826,251 - 40,840,169 (+)NCBIGRCr8
mRatBN7.21235,165,606 - 35,179,525 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1235,165,606 - 35,179,525 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1236,339,582 - 36,353,644 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01236,950,791 - 36,964,849 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01236,003,227 - 36,017,285 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01240,695,520 - 40,709,438 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1240,695,520 - 40,709,462 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01242,562,635 - 42,576,553 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41236,301,824 - 36,315,741 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11236,175,415 - 36,177,595 (+)NCBI
Celera1236,831,217 - 36,845,023 (+)NCBICelera
Cytogenetic Map12q16NCBI
TRAFD1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812112,125,560 - 112,153,604 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12112,125,538 - 112,153,604 (+)EnsemblGRCh38hg38GRCh38
GRCh3712112,563,364 - 112,591,408 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3612111,047,764 - 111,075,795 (+)NCBINCBI36Build 36hg18NCBI36
Celera12112,188,835 - 112,216,894 (+)NCBICelera
Cytogenetic Map12q24.13NCBI
HuRef12109,576,492 - 109,604,551 (+)NCBIHuRef
CHM1_112112,531,584 - 112,559,601 (+)NCBICHM1_1
T2T-CHM13v2.012112,102,466 - 112,130,510 (+)NCBIT2T-CHM13v2.0
Trafd1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395121,509,788 - 121,524,543 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5121,509,788 - 121,523,695 (-)EnsemblGRCm39 Ensembl
GRCm385121,371,725 - 121,386,570 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5121,371,725 - 121,385,632 (-)EnsemblGRCm38mm10GRCm38
MGSCv375121,821,734 - 121,835,624 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365121,632,347 - 121,646,188 (-)NCBIMGSCv36mm8
Celera5118,461,669 - 118,475,526 (-)NCBICelera
Cytogenetic Map5FNCBI
cM Map561.78NCBI
Trafd1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554828,693,323 - 8,710,226 (+)NCBIChiLan1.0ChiLan1.0
TRAFD1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v210120,216,735 - 120,244,190 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan112120,213,127 - 120,240,582 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v012109,722,290 - 109,749,731 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.112113,117,103 - 113,144,336 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12113,117,145 - 113,144,336 (+)Ensemblpanpan1.1panPan2
TRAFD1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1269,721,991 - 9,746,943 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl269,722,083 - 9,746,614 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha269,840,780 - 9,865,724 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0269,960,017 - 9,984,977 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl269,960,072 - 9,984,976 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1269,936,935 - 9,961,873 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02610,000,247 - 10,025,207 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02610,047,766 - 10,072,720 (+)NCBIUU_Cfam_GSD_1.0
Trafd1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118147,861,834 - 147,884,861 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366682,360,724 - 2,385,167 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366682,360,755 - 2,383,750 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TRAFD1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1439,549,851 - 39,579,781 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11439,549,849 - 39,579,781 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21442,052,800 - 42,069,112 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TRAFD1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111107,364,548 - 107,392,230 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl11107,364,534 - 107,392,262 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037137,700,189 - 137,727,739 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Trafd1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474720,034,803 - 20,057,197 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Trafd1
54 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:583
Count of miRNA genes:273
Interacting mature miRNAs:340
Transcripts:ENSRNOT00000033984
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631560Apr1Acute phase response QTL 16.1orosomucoid 1 amount (VT:0010541)plasma orosomucoid 1 level (CMO:0001467)121914436246669029Rat
8552964Pigfal17Plasma insulin-like growth factor 1 level QTL 173.5blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449546669029Rat
8693635Alc28Alcohol consumption QTL 282.70.439drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)122308134044726024Rat
61324Eae5Experimental allergic encephalomyelitis QTL 514nervous system integrity trait (VT:0010566)percentage of study population developing relapsing-remitting experimental autoimmune encephalomyelitis during a period of time (CMO:0001402)121961087046669029Rat
9590147Scort7Serum corticosterone level QTL 713.610.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)12142110980Rat
1549829Scl48Serum cholesterol level QTL 485blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)12960327746669029Rat
737822Alc10Alcohol consumption QTL 102.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)121961087040218516Rat
70169Eae13Experimental allergic encephalomyelitis QTL 130.032nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)122413920236638073Rat
1600386Calcic2Intracellular calcium level QTL 20.001platelet physiology trait (VT:0005464)platelet intracellular calcium level (CMO:0000922)122806443346669029Rat
1302792Scl21Serum cholesterol level QTL 213.80.0011blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)12719673046669029Rat
1556747Calcic1Intracellular calcium level QTL 13.6platelet calcium amount (VT:0010500)platelet intracellular calcium level (CMO:0000922)122806443340130419Rat
631829Alc6Alcohol consumption QTL 64.7consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)122860752637691617Rat
8693658Alc33Alcohol consumption QTL 332.10.68drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)122308134043551788Rat
1331761Bp218Blood pressure QTL 2182.973arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)121107382545055165Rat
8694179Bw150Body weight QTL 1502.90.001body mass (VT:0001259)body weight gain (CMO:0000420)12142110980Rat
7411545Bw128Body weight QTL 1285.20.001body mass (VT:0001259)body weight gain (CMO:0000420)12142110980Rat
7411547Bw129Body weight QTL 1290.001body mass (VT:0001259)body weight gain (CMO:0000420)6556449546669029Rat
737979Pia22Pristane induced arthritis QTL 2253.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)12144465750Rat
1298081Cia25Collagen induced arthritis QTL 254.7joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)121961088935682913Rat
2300186Bmd59Bone mineral density QTL 597.10.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)121047413746669029Rat
7411660Foco28Food consumption QTL 2810.90.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
70213Niddm27Non-insulin dependent diabetes mellitus QTL 273.72blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)121983578938193007Rat
7411641Foco19Food consumption QTL 1927.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
7411643Foco20Food consumption QTL 200.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)122032881946669029Rat
5684888Pia42Pristane induced arthritis QTL 42joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)121961087042828880Rat
1549912Bp268Blood pressure QTL 268arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)101318273646669029Rat
2302060Pia37Pristane induced arthritis QTL 376.10.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)121319815746669029Rat
1641928Alcrsp5Alcohol response QTL 5response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)121281238546669029Rat
1300162Bp188Blood pressure QTL 1883.19arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)123210317445899022Rat
8552912Pigfal6Plasma insulin-like growth factor 1 level QTL 65blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449846669029Rat
10059594Kidm46Kidney mass QTL 463.790.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)12610757946669029Rat
9590086Insglur6Insulin/glucose ratio QTL 618.970.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)12142110980Rat
8552918Pigfal7Plasma insulin-like growth factor 1 level QTL 7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449546669029Rat
1549902Bp269Blood pressure QTL 269arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)121318273646669029Rat
61404Bw120Body weight QTL 1205.1body mass (VT:0001259)body mass index (BMI) (CMO:0000105)121235161946669029Rat
1300175Cm5Cardiac mass QTL 53.78heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)122806443345899022Rat
1331787Rf41Renal function QTL 412.998kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)122806455740218380Rat
2293699Bss49Bone structure and strength QTL 495.610.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)121047413746669029Rat
634351Apr5Acute phase response QTL 56.7blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)12144503507Rat
634350Apr4Acute phase response QTL 46orosomucoid 1 amount (VT:0010541)plasma orosomucoid 1 level (CMO:0001467)12117200546172005Rat
7387292Kidm42Kidney mass QTL 423.030.0004kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)12136247923Rat
61421Cia12Collagen induced arthritis QTL 124.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)121363552335682913Rat
2303569Gluco44Glucose level QTL 442blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)121281238546669029Rat
7411586Foco5Food consumption QTL 55.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
2303575Insul14Insulin level QTL 144blood insulin amount (VT:0001560)blood insulin level (CMO:0000349)12142450532Rat
7411588Foco6Food consumption QTL 60.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
2302042Pia38Pristane induced arthritis QTL 383.50.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)12144503507Rat
7411595Foco9Food consumption QTL 940.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
7411597Foco10Food consumption QTL 100.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
631543Bp83Blood pressure QTL 835.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)121555082638478808Rat

Markers in Region
RH131011  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21235,179,271 - 35,179,454 (+)MAPPERmRatBN7.2
Rnor_6.01240,709,185 - 40,709,367NCBIRnor6.0
Rnor_5.01242,576,300 - 42,576,482UniSTSRnor5.0
RGSC_v3.41236,315,488 - 36,315,670UniSTSRGSC3.4
Celera1236,844,770 - 36,844,952UniSTS
RH 3.4 Map12594.4UniSTS
Cytogenetic Map12q16UniSTS


Genetic Models
This gene Trafd1 is modified in the following models/strains:
SS-Trafd1em1Mcwi    


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000033984   ⟹   ENSRNOP00000036651
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1235,165,606 - 35,179,525 (+)Ensembl
Rnor_6.0 Ensembl1240,695,520 - 40,709,438 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000091375   ⟹   ENSRNOP00000072077
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1235,171,975 - 35,178,659 (+)Ensembl
Rnor_6.0 Ensembl1240,695,756 - 40,709,462 (+)Ensembl
RefSeq Acc Id: NM_053760   ⟹   NP_446212
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81240,826,251 - 40,840,169 (+)NCBI
mRatBN7.21235,165,606 - 35,179,525 (+)NCBI
Rnor_6.01240,695,520 - 40,709,438 (+)NCBI
Rnor_5.01242,562,635 - 42,576,553 (+)NCBI
RGSC_v3.41236,301,824 - 36,315,741 (+)RGD
Celera1236,831,217 - 36,845,023 (+)RGD
Sequence:
RefSeq Acc Id: XM_006249376   ⟹   XP_006249438
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81240,826,406 - 40,840,169 (+)NCBI
mRatBN7.21235,165,763 - 35,179,525 (+)NCBI
Rnor_6.01240,695,712 - 40,709,438 (+)NCBI
Rnor_5.01242,562,635 - 42,576,553 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_446212 (Get FASTA)   NCBI Sequence Viewer  
  XP_006249438 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH88344 (Get FASTA)   NCBI Sequence Viewer  
  AAK32141 (Get FASTA)   NCBI Sequence Viewer  
  EDM13743 (Get FASTA)   NCBI Sequence Viewer  
  EDM13744 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000036651.4
  ENSRNOP00000072077.2
GenBank Protein Q99MM4 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_446212   ⟸   NM_053760
- UniProtKB: Q99MM4 (UniProtKB/Swiss-Prot),   Q5M806 (UniProtKB/Swiss-Prot),   G3V959 (UniProtKB/TrEMBL),   A6J1F4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006249438   ⟸   XM_006249376
- Peptide Label: isoform X1
- UniProtKB: Q99MM4 (UniProtKB/Swiss-Prot),   Q5M806 (UniProtKB/Swiss-Prot),   G3V959 (UniProtKB/TrEMBL),   A6J1F4 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000036651   ⟸   ENSRNOT00000033984
Ensembl Acc Id: ENSRNOP00000072077   ⟸   ENSRNOT00000091375
Protein Domains
TRAF-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q99MM4-F1-model_v2 AlphaFold Q99MM4 1-576 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698657
Promoter ID:EPDNEW_R9182
Type:multiple initiation site
Name:Trafd1_1
Description:TRAF type zinc finger domain containing 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R9183  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01240,695,545 - 40,695,605EPDNEW
RGD ID:13698661
Promoter ID:EPDNEW_R9183
Type:initiation region
Name:Trafd1_2
Description:TRAF type zinc finger domain containing 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R9182  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01240,695,754 - 40,695,814EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:620171 AgrOrtholog
BioCyc Gene G2FUF-19205 BioCyc
Ensembl Genes ENSRNOG00000001351 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000033984.6 UniProtKB/TrEMBL
  ENSRNOT00000091375.2 UniProtKB/TrEMBL
Gene3D-CATH 3.30.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Innate_Immune_Apopt_Reg UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TRAFD1-XIAF1_Znf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_TRAF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:114635 UniProtKB/TrEMBL
NCBI Gene 114635 ENTREZGENE
PANTHER TRAF-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TRAF-TYPE ZINC FINGER PROTEIN-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam TRAFD1-XIAF1_ZnF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Trafd1 PhenoGen
PROSITE ZF_TRAF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000001351 RatGTEx
UniProt A0A0G2K224_RAT UniProtKB/TrEMBL
  A6J1F4 ENTREZGENE, UniProtKB/TrEMBL
  G3V959 ENTREZGENE, UniProtKB/TrEMBL
  Q5M806 ENTREZGENE
  Q99MM4 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q5M806 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-02-19 Trafd1  TRAF type zinc finger domain containing 1  Fln29  FLN29 gene product  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-20 Fln29  FLN29 gene product      Symbol and Name status set to approved 1299863 APPROVED
2002-08-07 Fln29  FLN29 gene product      Symbol and Name status set to provisional 70820 PROVISIONAL