Trafd1 (TRAF-type zinc finger domain containing 1) - Rat Genome Database

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Gene: Trafd1 (TRAF-type zinc finger domain containing 1) Chinchilla lanigera
Analyze
Symbol: Trafd1
Name: TRAF-type zinc finger domain containing 1
RGD ID: 8713916
Description: INVOLVED IN negative regulation of innate immune response (ortholog); response to cytokine (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: TRAF-type zinc finger domain-containing protein 1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554828,693,323 - 8,710,226 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species

Genomics

Comparative Map Data
Trafd1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554828,693,323 - 8,710,226 (+)NCBIChiLan1.0ChiLan1.0
TRAFD1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812112,125,560 - 112,153,604 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12112,125,538 - 112,153,604 (+)EnsemblGRCh38hg38GRCh38
GRCh3712112,563,364 - 112,591,408 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3612111,047,764 - 111,075,795 (+)NCBINCBI36Build 36hg18NCBI36
Celera12112,188,835 - 112,216,894 (+)NCBICelera
Cytogenetic Map12q24.13NCBI
HuRef12109,576,492 - 109,604,551 (+)NCBIHuRef
CHM1_112112,531,584 - 112,559,601 (+)NCBICHM1_1
T2T-CHM13v2.012112,102,466 - 112,130,510 (+)NCBIT2T-CHM13v2.0
Trafd1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395121,509,788 - 121,524,543 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5121,509,788 - 121,523,695 (-)EnsemblGRCm39 Ensembl
GRCm385121,371,725 - 121,386,570 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5121,371,725 - 121,385,632 (-)EnsemblGRCm38mm10GRCm38
MGSCv375121,821,734 - 121,835,624 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365121,632,347 - 121,646,188 (-)NCBIMGSCv36mm8
Celera5118,461,669 - 118,475,526 (-)NCBICelera
Cytogenetic Map5FNCBI
cM Map561.78NCBI
Trafd1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81240,826,251 - 40,840,169 (+)NCBIGRCr8
mRatBN7.21235,165,606 - 35,179,525 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1235,165,606 - 35,179,525 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1236,339,582 - 36,353,644 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01236,950,791 - 36,964,849 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01236,003,227 - 36,017,285 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01240,695,520 - 40,709,438 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1240,695,520 - 40,709,462 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01242,562,635 - 42,576,553 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41236,301,824 - 36,315,741 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11236,175,415 - 36,177,595 (+)NCBI
Celera1236,831,217 - 36,845,023 (+)NCBICelera
Cytogenetic Map12q16NCBI
TRAFD1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v210120,216,735 - 120,244,190 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan112120,213,127 - 120,240,582 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v012109,722,290 - 109,749,731 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.112113,117,103 - 113,144,336 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12113,117,145 - 113,144,336 (+)Ensemblpanpan1.1panPan2
TRAFD1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1269,721,991 - 9,746,943 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl269,722,083 - 9,746,614 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha269,840,780 - 9,865,724 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0269,960,017 - 9,984,977 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl269,960,072 - 9,984,976 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1269,936,935 - 9,961,873 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02610,000,247 - 10,025,207 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02610,047,766 - 10,072,720 (+)NCBIUU_Cfam_GSD_1.0
Trafd1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118147,861,834 - 147,884,861 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366682,360,724 - 2,385,167 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366682,360,755 - 2,383,750 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TRAFD1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1439,549,851 - 39,579,781 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11439,549,849 - 39,579,781 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21442,052,800 - 42,069,112 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TRAFD1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111107,364,548 - 107,392,230 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl11107,364,534 - 107,392,262 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037137,700,189 - 137,727,739 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Trafd1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474720,034,803 - 20,057,197 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_005403189   ⟹   XP_005403246
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554828,693,323 - 8,710,226 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005403246 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000013483.1
RefSeq Acc Id: XP_005403246   ⟸   XM_005403189
- Sequence:


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000009321 UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000013637.1 UniProtKB/TrEMBL
InterPro Innate_Immune_Apopt_Reg UniProtKB/TrEMBL
NCBI Gene Trafd1 ENTREZGENE
PANTHER TRAF-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 UniProtKB/TrEMBL
  TRAF-TYPE ZINC FINGER PROTEIN-RELATED UniProtKB/TrEMBL
UniProt A0A8C2VIV2_CHILA UniProtKB/TrEMBL