TRAFD1 (TRAF-type zinc finger domain containing 1)

Gene: TRAFD1 (TRAF-type zinc finger domain containing 1) Homo sapiens

Analyze

Symbol:

TRAFD1

Name:

TRAF-type zinc finger domain containing 1

RGD ID:

1605702

HGNC Page

HGNC:24808

Description:

Predicted to enable metal ion binding activity. Predicted to be involved in negative regulation of innate immune response. Predicted to be active in mitochondrion.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

FLN29; FLN29 gene product; TRAF-type zinc finger domain-containing protein 1

RGD Orthologs

Alliance Genes

More Info

more info ...

Allele / Splice:

See ClinVar data

Latest Assembly:

GRCh38 - Human Genome Assembly GRCh38

Position:

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	112,125,560 - 112,153,604 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	112,125,538 - 112,153,604 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	12	112,563,364 - 112,591,408 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	111,047,764 - 111,075,795 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	12	112,188,835 - 112,216,894 (+)	NCBI		Celera
Cytogenetic Map	12	q24.13	NCBI
HuRef	12	109,576,492 - 109,604,551 (+)	NCBI		HuRef
CHM1_1	12	112,531,584 - 112,559,601 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	12	112,102,466 - 112,130,510 (+)	NCBI		T2T-CHM13v2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Experimental Liver Cirrhosis (EXP)

genetic disease (IAGP)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

1-naphthyl isothiocyanate (ISO)

17beta-estradiol (EXP)

2,3',4,4',5-Pentachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-hydroxypropanoic acid (EXP)

4,4'-diaminodiphenylmethane (ISO)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (ISO)

acetamide (ISO)

adefovir pivoxil (EXP)

aflatoxin B1 (EXP)

all-trans-retinoic acid (EXP)

ammonium chloride (ISO)

antirheumatic drug (EXP)

aristolochic acid A (EXP)

azoxystrobin (ISO)

benzo[a]pyrene (ISO)

bisphenol A (ISO)

bisphenol F (ISO)

bortezomib (EXP)

C60 fullerene (ISO)

cadmium dichloride (EXP)

caffeine (EXP)

capsaicin (ISO)

carbon nanotube (ISO)

chlordecone (ISO)

chlorpromazine (ISO)

chlorpyrifos (ISO)

chromium(6+) (ISO)

cidofovir anhydrous (EXP)

cisplatin (EXP)

clodronic acid (EXP)

clofibrate (ISO)

coumarin (EXP)

cyclosporin A (ISO)

diethylstilbestrol (EXP)

dioxygen (EXP)

doxorubicin (EXP)

elemental selenium (EXP)

enzyme inhibitor (EXP)

ethyl methanesulfonate (EXP)

fenofibrate (ISO)

flutamide (ISO)

formaldehyde (EXP)

FR900359 (EXP)

gentamycin (ISO)

glyphosate (ISO)

ifosfamide (EXP)

imidacloprid (ISO)

ivermectin (EXP)

metformin (ISO)

methyl methanesulfonate (EXP)

nickel atom (EXP)

oxaliplatin (ISO)

paracetamol (EXP,ISO)

pentachlorophenol (ISO)

perfluorooctane-1-sulfonic acid (ISO)

propiconazole (ISO)

rac-lactic acid (EXP)

selenium atom (EXP)

silver atom (ISO)

silver(0) (ISO)

sulforaphane (EXP)

sunitinib (EXP)

temozolomide (EXP)

thiabendazole (ISO)

thioacetamide (ISO)

topotecan (ISO)

trovafloxacin (ISO)

urethane (EXP)

valproic acid (ISO)

vitamin E (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

negative regulation of innate immune response (IBA,IEA,ISS)

response to cytokine (ISO)

Cellular Component

mitochondrion (IBA,IEA)

Molecular Function

metal ion binding (IEA)

protein binding (IPI)

References

References - curated

#	Reference Title	Reference Citation
1.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:8889548	PMID:12477932	PMID:15302935	PMID:15489334	PMID:16196087	PMID:16221674	PMID:16565220	PMID:16964243	PMID:17081983	PMID:17500595	PMID:17554300	PMID:18849341
PMID:19862010	PMID:21873635	PMID:21942715	PMID:23275563	PMID:23314748	PMID:23398456	PMID:23455922	PMID:23602568	PMID:24981174	PMID:25416956	PMID:25992615	PMID:26496610
PMID:26618866	PMID:26673895	PMID:26760575	PMID:26841866	PMID:26972000	PMID:27173435	PMID:27545878	PMID:28065597	PMID:28378594	PMID:28380382	PMID:28514442	PMID:29777862
PMID:29778605	PMID:30021884	PMID:30166453	PMID:30833792	PMID:31073040	PMID:31091453	PMID:31515488	PMID:31753913	PMID:32296183	PMID:32614325	PMID:33001583	PMID:33277362
PMID:33306668	PMID:33729478	PMID:33845483	PMID:33961781	PMID:34597346	PMID:34599178	PMID:34709727	PMID:34917906	PMID:35013556	PMID:35156780	PMID:35253629	PMID:35256949
PMID:35338135	PMID:35384245	PMID:35509820	PMID:35563538	PMID:35987950	PMID:36012204	PMID:36180527	PMID:36215168	PMID:36538041	PMID:36672782	PMID:38113892

Genomics

Comparative Map Data

TRAFD1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	112,125,560 - 112,153,604 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	112,125,538 - 112,153,604 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	12	112,563,364 - 112,591,408 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	111,047,764 - 111,075,795 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	12	112,188,835 - 112,216,894 (+)	NCBI		Celera
Cytogenetic Map	12	q24.13	NCBI
HuRef	12	109,576,492 - 109,604,551 (+)	NCBI		HuRef
CHM1_1	12	112,531,584 - 112,559,601 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	12	112,102,466 - 112,130,510 (+)	NCBI		T2T-CHM13v2.0

Trafd1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	121,509,788 - 121,524,543 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	121,509,788 - 121,523,695 (-)	Ensembl		GRCm39 Ensembl
GRCm38	5	121,371,725 - 121,386,570 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	121,371,725 - 121,385,632 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	5	121,821,734 - 121,835,624 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	5	121,632,347 - 121,646,188 (-)	NCBI		MGSCv36	mm8
Celera	5	118,461,669 - 118,475,526 (-)	NCBI		Celera
Cytogenetic Map	5	F	NCBI
cM Map	5	61.78	NCBI

Trafd1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	12	40,826,251 - 40,840,169 (+)	NCBI		GRCr8
mRatBN7.2	12	35,165,606 - 35,179,525 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	12	35,165,606 - 35,179,525 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	12	36,339,582 - 36,353,644 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	12	36,950,791 - 36,964,849 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	12	36,003,227 - 36,017,285 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	12	40,695,520 - 40,709,438 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	12	40,695,520 - 40,709,462 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	12	42,562,635 - 42,576,553 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	12	36,301,824 - 36,315,741 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	12	36,175,415 - 36,177,595 (+)	NCBI
Celera	12	36,831,217 - 36,845,023 (+)	NCBI		Celera
Cytogenetic Map	12	q16	NCBI

Trafd1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955482	8,693,323 - 8,710,226 (+)	NCBI	ChiLan1.0	ChiLan1.0

TRAFD1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	10	120,216,735 - 120,244,190 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	12	120,213,127 - 120,240,582 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	109,722,290 - 109,749,731 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	113,117,103 - 113,144,336 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	113,117,145 - 113,144,336 (+)	Ensembl	panpan1.1		panPan2

TRAFD1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	26	9,721,991 - 9,746,943 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	26	9,722,083 - 9,746,614 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	26	9,840,780 - 9,865,724 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	26	9,960,017 - 9,984,977 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	26	9,960,072 - 9,984,976 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	26	9,936,935 - 9,961,873 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	26	10,000,247 - 10,025,207 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	26	10,047,766 - 10,072,720 (+)	NCBI		UU_Cfam_GSD_1.0

Trafd1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	147,861,834 - 147,884,861 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936668	2,360,724 - 2,385,167 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936668	2,360,755 - 2,383,750 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TRAFD1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	39,549,851 - 39,579,781 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	14	39,549,849 - 39,579,781 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	42,052,800 - 42,069,112 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TRAFD1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	107,364,548 - 107,392,230 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	11	107,364,534 - 107,392,262 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666037	137,700,189 - 137,727,739 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Trafd1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624747	20,034,803 - 20,057,197 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in TRAFD1
26 total Variants

Clinical Variants

Name	Type	Condition(s)	Position(s)	Clinical significance
GRCh38/hg38 12q23.3-24.13(chr12:105234677-112194686)x1	copy number loss	See cases [RCV000050807]	Chr12:105234677..112194686 [GRCh38] Chr12:105628455..112632490 [GRCh37] Chr12:104152585..111116873 [NCBI36] Chr12:12q23.3-24.13	pathogenic
GRCh38/hg38 12p13.33-q24.33(chr12:121271-133196807)x3	copy number gain	See cases [RCV000139555]	Chr12:121271..133196807 [GRCh38] Chr12:282465..133773393 [GRCh37] Chr12:100698..132283466 [NCBI36] Chr12:12p13.33-q24.33	pathogenic
GRCh37/hg19 12p13.33-q24.33(chr12:1-133851895)x3	copy number gain	See cases [RCV000258805]	Chr12:1..133851895 [GRCh37] Chr12:12p13.33-q24.33	pathogenic\|likely pathogenic
GRCh37/hg19 12p13.33-q24.33(chr12:173787-133777902)x3	copy number gain	See cases [RCV000510482]	Chr12:173787..133777902 [GRCh37] Chr12:12p13.33-q24.33	pathogenic
GRCh37/hg19 12p13.33-q24.33(chr12:173787-133777902)	copy number gain	See cases [RCV000511643]	Chr12:173787..133777902 [GRCh37] Chr12:12p13.33-q24.33	pathogenic
NM_006700.3(TRAFD1):c.1660G>T (p.Ala554Ser)	single nucleotide variant	Inborn genetic diseases [RCV003287588]	Chr12:112152467 [GRCh38] Chr12:112590271 [GRCh37] Chr12:12q24.13	uncertain significance
NM_006700.3(TRAFD1):c.29C>A (p.Thr10Asn)	single nucleotide variant	Inborn genetic diseases [RCV003285729]	Chr12:112130551 [GRCh38] Chr12:112568355 [GRCh37] Chr12:12q24.13	uncertain significance
NM_006700.3(TRAFD1):c.166G>A (p.Ala56Thr)	single nucleotide variant	Inborn genetic diseases [RCV003289042]	Chr12:112134856 [GRCh38] Chr12:112572660 [GRCh37] Chr12:12q24.13	uncertain significance
GRCh37/hg19 12p13.33-q24.33(chr12:621220-133779118)x3	copy number gain	not provided [RCV000750253]	Chr12:621220..133779118 [GRCh37] Chr12:12p13.33-q24.33	pathogenic
GRCh37/hg19 12p13.33-q24.33(chr12:191619-133777645)x3	copy number gain	not provided [RCV000750246]	Chr12:191619..133777645 [GRCh37] Chr12:12p13.33-q24.33	pathogenic
NM_006700.3(TRAFD1):c.696G>A (p.Glu232=)	single nucleotide variant	not provided [RCV000970874]	Chr12:112142141 [GRCh38] Chr12:112579945 [GRCh37] Chr12:12q24.13	benign
NM_006700.3(TRAFD1):c.823G>A (p.Gly275Ser)	single nucleotide variant	Inborn genetic diseases [RCV003252696]	Chr12:112142268 [GRCh38] Chr12:112580072 [GRCh37] Chr12:12q24.13	uncertain significance
NM_006700.3(TRAFD1):c.1490G>A (p.Arg497Gln)	single nucleotide variant	Inborn genetic diseases [RCV002990599]	Chr12:112152011 [GRCh38] Chr12:112589815 [GRCh37] Chr12:12q24.13	likely benign
NM_006700.3(TRAFD1):c.435G>C (p.Glu145Asp)	single nucleotide variant	Inborn genetic diseases [RCV002727639]	Chr12:112141016 [GRCh38] Chr12:112578820 [GRCh37] Chr12:12q24.13	uncertain significance
NM_006700.3(TRAFD1):c.1361C>G (p.Pro454Arg)	single nucleotide variant	Inborn genetic diseases [RCV002727767]	Chr12:112151882 [GRCh38] Chr12:112589686 [GRCh37] Chr12:12q24.13	uncertain significance
NM_006700.3(TRAFD1):c.1643A>C (p.Asn548Thr)	single nucleotide variant	Inborn genetic diseases [RCV002778598]	Chr12:112152450 [GRCh38] Chr12:112590254 [GRCh37] Chr12:12q24.13	uncertain significance
NM_006700.3(TRAFD1):c.1636G>A (p.Gly546Ser)	single nucleotide variant	Inborn genetic diseases [RCV002848858]	Chr12:112152443 [GRCh38] Chr12:112590247 [GRCh37] Chr12:12q24.13	uncertain significance
NM_006700.3(TRAFD1):c.800G>A (p.Cys267Tyr)	single nucleotide variant	Inborn genetic diseases [RCV002998596]	Chr12:112142245 [GRCh38] Chr12:112580049 [GRCh37] Chr12:12q24.13	uncertain significance
NM_006700.3(TRAFD1):c.1354A>G (p.Ser452Gly)	single nucleotide variant	Inborn genetic diseases [RCV002703658]	Chr12:112151875 [GRCh38] Chr12:112589679 [GRCh37] Chr12:12q24.13	uncertain significance
NM_006700.3(TRAFD1):c.505C>T (p.Leu169Phe)	single nucleotide variant	Inborn genetic diseases [RCV002662222]	Chr12:112141086 [GRCh38] Chr12:112578890 [GRCh37] Chr12:12q24.13	uncertain significance
NM_006700.3(TRAFD1):c.1525G>A (p.Gly509Arg)	single nucleotide variant	Inborn genetic diseases [RCV002641581]	Chr12:112152046 [GRCh38] Chr12:112589850 [GRCh37] Chr12:12q24.13	uncertain significance
NM_006700.3(TRAFD1):c.394C>G (p.Pro132Ala)	single nucleotide variant	Inborn genetic diseases [RCV002850179]	Chr12:112140975 [GRCh38] Chr12:112578779 [GRCh37] Chr12:12q24.13	uncertain significance
NM_006700.3(TRAFD1):c.1360C>T (p.Pro454Ser)	single nucleotide variant	Inborn genetic diseases [RCV002764109]	Chr12:112151881 [GRCh38] Chr12:112589685 [GRCh37] Chr12:12q24.13	uncertain significance
NM_006700.3(TRAFD1):c.1580C>T (p.Pro527Leu)	single nucleotide variant	Inborn genetic diseases [RCV002985955]	Chr12:112152101 [GRCh38] Chr12:112589905 [GRCh37] Chr12:12q24.13	uncertain significance
NM_006700.3(TRAFD1):c.322T>G (p.Tyr108Asp)	single nucleotide variant	Inborn genetic diseases [RCV002835813]	Chr12:112140903 [GRCh38] Chr12:112578707 [GRCh37] Chr12:12q24.13	uncertain significance
NM_006700.3(TRAFD1):c.1723G>C (p.Asp575His)	single nucleotide variant	Inborn genetic diseases [RCV002814242]	Chr12:112152765 [GRCh38] Chr12:112590569 [GRCh37] Chr12:12q24.13	uncertain significance
NM_006700.3(TRAFD1):c.1051G>C (p.Asp351His)	single nucleotide variant	Inborn genetic diseases [RCV003193241]	Chr12:112148197 [GRCh38] Chr12:112586001 [GRCh37] Chr12:12q24.13	uncertain significance
NM_006700.3(TRAFD1):c.1304A>G (p.Asp435Gly)	single nucleotide variant	Inborn genetic diseases [RCV003179153]	Chr12:112151825 [GRCh38] Chr12:112589629 [GRCh37] Chr12:12q24.13	uncertain significance
NM_006700.3(TRAFD1):c.1406C>T (p.Thr469Ile)	single nucleotide variant	Inborn genetic diseases [RCV003287587]	Chr12:112151927 [GRCh38] Chr12:112589731 [GRCh37] Chr12:12q24.13	uncertain significance
NM_006700.3(TRAFD1):c.1648C>T (p.Arg550Trp)	single nucleotide variant	Inborn genetic diseases [RCV003355984]	Chr12:112152455 [GRCh38] Chr12:112590259 [GRCh37] Chr12:12q24.13	uncertain significance

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	2084
Count of miRNA genes:	846
Interacting mature miRNAs:	1019
Transcripts:	ENST00000257604, ENST00000412615, ENST00000547063, ENST00000548092, ENST00000548277, ENST00000549358, ENST00000550051, ENST00000552890, ENST00000552896
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region

RH64950

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	12	112,574,472 - 112,574,660	UniSTS	GRCh37
Build 36	12	111,058,855 - 111,059,043	RGD	NCBI36
Celera	12	112,199,958 - 112,200,146	RGD
Cytogenetic Map	12	q	UniSTS
HuRef	12	109,587,615 - 109,587,803	UniSTS
GeneMap99-GB4 RH Map	12	443.64	UniSTS
NCBI RH Map	12	719.5	UniSTS

D12S1234E

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	12	112,572,566 - 112,572,864	UniSTS	GRCh37
Build 36	12	111,056,949 - 111,057,247	RGD	NCBI36
Celera	12	112,198,052 - 112,198,350	RGD
Cytogenetic Map	12	q	UniSTS
HuRef	12	109,585,709 - 109,586,007	UniSTS

D1S2331E

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	12	112,578,652 - 112,578,742	UniSTS	GRCh37
Build 36	12	111,063,035 - 111,063,125	RGD	NCBI36
Celera	12	112,204,138 - 112,204,228	RGD
Cytogenetic Map	12	q	UniSTS
HuRef	12	109,591,795 - 109,591,885	UniSTS

SHGC-149403

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	12	112,586,187 - 112,586,514	UniSTS	GRCh37
Build 36	12	111,070,570 - 111,070,897	RGD	NCBI36
Celera	12	112,211,673 - 112,212,000	RGD
Cytogenetic Map	12	q	UniSTS
HuRef	12	109,599,330 - 109,599,657	UniSTS
TNG Radiation Hybrid Map	12	54941.0	UniSTS

D12S275E

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	12	112,578,701 - 112,578,820	UniSTS	GRCh37
Build 36	12	111,063,084 - 111,063,203	RGD	NCBI36
Celera	12	112,204,187 - 112,204,306	RGD
Cytogenetic Map	12	q	UniSTS
HuRef	12	109,591,844 - 109,591,963	UniSTS

A006C17

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	12	112,591,220 - 112,591,351	UniSTS	GRCh37
Build 36	12	111,075,603 - 111,075,734	RGD	NCBI36
Celera	12	112,216,706 - 112,216,837	RGD
Cytogenetic Map	12	q	UniSTS
HuRef	12	109,604,363 - 109,604,494	UniSTS
GeneMap99-GB4 RH Map	12	443.75	UniSTS

A009D45

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	12	112,574,508 - 112,574,721	UniSTS	GRCh37
Build 36	12	111,058,891 - 111,059,104	RGD	NCBI36
Celera	12	112,199,994 - 112,200,207	RGD
Cytogenetic Map	12	q	UniSTS
HuRef	12	109,587,651 - 109,587,864	UniSTS
GeneMap99-GB4 RH Map	12	443.75	UniSTS
NCBI RH Map	12	718.7	UniSTS

L17746

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	12	112,564,922 - 112,565,884	UniSTS	GRCh37
Celera	12	112,190,408 - 112,191,370	UniSTS
Cytogenetic Map	12	q	UniSTS
HuRef	12	109,578,065 - 109,579,027	UniSTS

G32459

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	12	112,574,508 - 112,574,721	UniSTS	GRCh37
Celera	12	112,199,994 - 112,200,207	UniSTS
Cytogenetic Map	12	q	UniSTS
HuRef	12	109,587,651 - 109,587,864	UniSTS

A002Y44

Human Assembly	Chr	Position (strand)	Source
Cytogenetic Map	12	q	UniSTS
GeneMap99-GB4 RH Map	12	443.64	UniSTS
NCBI RH Map	12	719.5	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system

circulatory system

endocrine system

exocrine system

hemolymphoid system

hepatobiliary system

integumental system

musculoskeletal system

nervous system

renal system

reproductive system

respiratory system

sensory system

visual system

adipose tissue

appendage

entire extraembryonic component

pharyngeal arch

High

Medium

2364

2537

1392

329

1904

175

3684

1246

2363

353

1450

1608

171

1183

2116

Low

454

334

295

290

673

951

1371

672

Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001143906	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_006700	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AB007447	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC073575	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK122620	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK291331	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK295474	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK309916	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK312601	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC003553	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BG828961	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CA314188	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH471054	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CP068266	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	HF583873	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENST00000257604 ⟹ ENSP00000257604

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	12	112,125,545 - 112,153,603 (+)	Ensembl

RefSeq Acc Id:

ENST00000412615 ⟹ ENSP00000396526

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	12	112,125,560 - 112,153,604 (+)	Ensembl

RefSeq Acc Id:

ENST00000547063 ⟹ ENSP00000449297

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	12	112,125,554 - 112,142,148 (+)	Ensembl

RefSeq Acc Id:

ENST00000548092 ⟹ ENSP00000473800

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	12	112,125,557 - 112,140,910 (+)	Ensembl

RefSeq Acc Id:

ENST00000548277

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	12	112,141,953 - 112,148,213 (+)	Ensembl

RefSeq Acc Id:

ENST00000549358 ⟹ ENSP00000449319

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	12	112,125,545 - 112,140,986 (+)	Ensembl

RefSeq Acc Id:

ENST00000550051

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	12	112,125,538 - 112,141,491 (+)	Ensembl

RefSeq Acc Id:

ENST00000552890 ⟹ ENSP00000447340

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	12	112,125,560 - 112,149,808 (+)	Ensembl

RefSeq Acc Id:

ENST00000552896 ⟹ ENSP00000450357

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	12	112,125,563 - 112,142,295 (+)	Ensembl

RefSeq Acc Id:

NM_001143906 ⟹ NP_001137378

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	12	112,125,560 - 112,153,604 (+)	NCBI
GRCh37	12	112,563,349 - 112,591,408 (+)	RGD
Celera	12	112,188,835 - 112,216,894 (+)	RGD
HuRef	12	109,576,492 - 109,604,551 (+)	RGD
CHM1_1	12	112,531,584 - 112,559,601 (+)	NCBI
T2T-CHM13v2.0	12	112,102,466 - 112,130,510 (+)	NCBI

Sequence:

show sequence

AGAGGAGGCTCCGTGTCTGCAGCTAGTGTGTCAACTCAGCGTTTCTCCTCTCGTCCCTGGTGAG
GTGTAGCGGCGGCACGCGGCTGGAGATCCCCTGTGGCCTCCAGTTTAGGAAGGGTCCAGCATCC
CAAGGGAGGGGTGTGTGGGCGAGGGGTCTCTGGGCCCGGGGTCGCGGCTGTGAGGAGAGGATGC
CCGCGCGGCGGCATCTCAGGCACCTGGAGGAGGCCGCGCTTTCTCCTCAGGGAACCGGCGCCTT
GGCAGCCCCCGGCGACGCCGCCCCCTTCGCGGCCTAGGTTGGTCTGGTGAGCCGGGAAGCGGGC
GTCGTTCGCAGCGCCGCTGTGACCACCGCGTCCCGGGCGGAGCTGGGCTCAGTGCCGGCCTGGG
CCTAGAGTCCGAGCCTCGAGCTGCCGGCGTGGGGGGTCGCGAGTGGCCTAATGCGGCCTCGAAG
CCGAAGGACCCGAGTCCGAGCTCGCACTCCGACCCGCTGGTGCTGTGGAAAACTCAGGTGGCCT
TCCGCTTTCGTAGCCTCTAAAGTGGGGACCAAGACTTTCACCTCTTAGGATTGTAGTCGGGATT
AAAAGATTTTCCCGGAAGAGCTAAAGATGGCTGAATTTCTAGATGACCAGGAAACTCGACTGTG
TGACAACTGCAAAAAAGAAATTCCTGTGTTTAACTTTACCATCCATGAGATCCACTGTCAAAGG
AACATTGGTATGTGTCCTACCTGTAAGGAACCATTTCCCAAATCTGACATGGAGACTCACATGG
CTGCAGAACACTGTCAGGTGACCTGCAAATGTAACAAGAAGTTGGAGAAGAGGCTGTTAAAGAA
GCATGAGGAGACTGAGTGCCCTTTGCGGCTTGCTGTCTGCCAGCACTGTGATTTAGAACTTTCC
ATTCTCAAACTGAAGGAACATGAAGATTATTGTGGTGCCCGGACGGAACTATGTGGCAACTGTG
GTCGCAATGTCCTTGTGAAAGATCTGAAGACTCACCCTGAAGTTTGTGGGAGAGAGGGGGAGGA
AAAGAGAAATGAGGTTGCCATACCTCCTAATGCATATGATGAATCTTGGGGTCAGGATGGAATC
TGGATTGCATCCCAACTCCTCAGACAAATTGAGGCTCTGGACCCACCCATGAGGCTGCCGCGAA
GGCCCCTGAGAGCCTTTGAATCAGATGTTTTCCACAATAGAACTACCAACCAAAGGAACATTAC
AGCCCAGGTTTCAATTCAGAATAATCTGTTTGAAGAACAAGAGAGGCAGGAAAGGAATAGAGGC
CAACAGCCCCCCAAAGAGGGTGGTGAAGAGAGTGCAAACTTGGACTTCATGTTGGCCCTAAGTC
TGCAAAATGAAGGCCAAGCCTCCAGTGTGGCAGAGCAGGACTTCTGGAGGGCCGTATGTGAGGC
CGACCAGTCTCATGGCGGTCCCAGGTCTCTCAGTGACATAAAGGGTGCAGCTGACGAGATCATG
TTGCCTTGTGAATTTTGTGAGGAGCTCTACCCAGAGGAACTGCTGATTGACCATCAGACAAGCT
GTAACCCTTCACGTGCCTTACCTTCACTCAATACTGGCAGCTCTTCCCCCAGAGGGGTGGAGGA
ACCTGATGTCATCTTCCAGAACTTCTTGCAACAGGCTGCAAGTAACCAGTTAGACTCTTTGATG
GGCCTGAGCAATTCACACCCTGTGGAGGAGAGCATCATTATCCCATGTGAATTCTGTGGGGTAC
AGCTGGAAGAGGAGGTGCTGTTCCATCACCAGGACCAGTGTGACCAACGCCCAGCCACTGCAAC
CAACCATGTGACAGAGGGGATTCCTAGACTGGATTCCCAGCCTCAAGAGACCTCACCAGAGCTG
CCCAGGAGGCGTGTCAGACACCAGGGAGACCTGTCTTCTGGTTACCTGGATGATACTAAGCAGG
AAACAGCTAATGGGCCCACCTCCTGTCTGCCTCCCAGCCGACCCATTAACAATATGACAGCTAC
CTATAACCAGCTATCGAGATCAACATCAGGCCCCAGACCTGGGTGCCAGCCCAGCTCTCCTTGT
GTGCCGAAGCTCAGCAACTCAGACAGCCAGGACATCCAGGGGCGGAATCGAGACAGCCAGAATG
GGGCCATAGCCCCTGGGCACGTTTCAGTGATTCGCCCTCCTCAAAATCTCTACCCAGAAAACAT
TGTGCCCTCTTTCTCCCCTGGGCCTTCAGGGAGATACGGAGCTAGTGGTAGGAGTGAAGGTGGC
AGGAATTCCCGGGTCACCCCTGCAGCTGCCAACTACCGCAGCAGAACTGCAAAGGCAAAGCCTT
CCAAGCAACAGGGAGCTGGGGATGCAGAAGAGGAAGAGGAGGAGTAATGGTGTCTCCAGAGACT
TTACATCGGTTCCTGTCTTCTGTGCACAGCAGCACTTGCCGCTGTGCAGGCCCACCTCTTTGGC
TCTTTGGGTGGGAGAGTTTTTCCAGATTTTAGATTTTTCTAGGTTATGGCCATTTTGTGTCTTT
TGAGGTTGTGCTGTGGGGGTTTGGGTTTGAGGGAAGGGAGCAGGGTGGCGGTTGAGGAACGCTT
CAGCCTTAGCTGCTACCTTTCGGCAGCAGTGAAATACAAGCTGCAGCCTCGGCTGCCAGGGCTC
CCTTTTGACTTATTGTCGCCACTGCCCCTTGGTGCTGTGTGGTCCCAGTGGAAGGAGGGGAAGA
TTTTGGAAACCTGGTAGCCACCAGTAAGGTGATTCTCTGCCCTGTTGGGGCCTAAATTTGGGGG
CTTTTGGGCAACCTCTCCGTGTACTGCGTCTGTCCACACTCGATTGGGCCCCAGGTGTGTATGA
GGCGCTCTGGTAAGGTGCTCAGGCCAGTTGCAATGTCTGTCAGTAACGAGGCTTTTGATGTGTT
GAGCTGGAGGTGAGTGGACCGGGGGCTGTGTTTTAAGCTGCTTCCTTGGCATTTGGCATCACTG
CCTTCTGTTCCCGGGGGAGCATGGATCTTTTGTCCTCACTGCTTTCTAATGGGGAGGGCTGAGG
GCTCCCTGTCCCCACAGCAGGTATGTTGGGCTCTGCCCCAGCCCCACACTTGCTCTGAAAACCA
AGTGTCAGAGCCCCTTCCCCTTGTTTTTATTTTACTGTTATAATAATTATTAACTTCCTTGTAA
TAGAAATAAAGTTTGTACTTGGAGTTCA

hide sequence

RefSeq Acc Id:

NM_006700 ⟹ NP_006691

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	12	112,125,560 - 112,153,604 (+)	NCBI
GRCh37	12	112,563,349 - 112,591,408 (+)	RGD
Build 36	12	111,047,764 - 111,075,795 (+)	NCBI Archive
Celera	12	112,188,835 - 112,216,894 (+)	RGD
HuRef	12	109,576,492 - 109,604,551 (+)	RGD
CHM1_1	12	112,531,584 - 112,559,601 (+)	NCBI
T2T-CHM13v2.0	12	112,102,466 - 112,130,510 (+)	NCBI

Sequence:

show sequence

AGAGGAGGCTCCGTGTCTGCAGCTAGTGTGTCAACTCAGCGTTTCTCCTCTCGTCCCTGGAAGA
GCTAAAGATGGCTGAATTTCTAGATGACCAGGAAACTCGACTGTGTGACAACTGCAAAAAAGAA
ATTCCTGTGTTTAACTTTACCATCCATGAGATCCACTGTCAAAGGAACATTGGTATGTGTCCTA
CCTGTAAGGAACCATTTCCCAAATCTGACATGGAGACTCACATGGCTGCAGAACACTGTCAGGT
GACCTGCAAATGTAACAAGAAGTTGGAGAAGAGGCTGTTAAAGAAGCATGAGGAGACTGAGTGC
CCTTTGCGGCTTGCTGTCTGCCAGCACTGTGATTTAGAACTTTCCATTCTCAAACTGAAGGAAC
ATGAAGATTATTGTGGTGCCCGGACGGAACTATGTGGCAACTGTGGTCGCAATGTCCTTGTGAA
AGATCTGAAGACTCACCCTGAAGTTTGTGGGAGAGAGGGGGAGGAAAAGAGAAATGAGGTTGCC
ATACCTCCTAATGCATATGATGAATCTTGGGGTCAGGATGGAATCTGGATTGCATCCCAACTCC
TCAGACAAATTGAGGCTCTGGACCCACCCATGAGGCTGCCGCGAAGGCCCCTGAGAGCCTTTGA
ATCAGATGTTTTCCACAATAGAACTACCAACCAAAGGAACATTACAGCCCAGGTTTCAATTCAG
AATAATCTGTTTGAAGAACAAGAGAGGCAGGAAAGGAATAGAGGCCAACAGCCCCCCAAAGAGG
GTGGTGAAGAGAGTGCAAACTTGGACTTCATGTTGGCCCTAAGTCTGCAAAATGAAGGCCAAGC
CTCCAGTGTGGCAGAGCAGGACTTCTGGAGGGCCGTATGTGAGGCCGACCAGTCTCATGGCGGT
CCCAGGTCTCTCAGTGACATAAAGGGTGCAGCTGACGAGATCATGTTGCCTTGTGAATTTTGTG
AGGAGCTCTACCCAGAGGAACTGCTGATTGACCATCAGACAAGCTGTAACCCTTCACGTGCCTT
ACCTTCACTCAATACTGGCAGCTCTTCCCCCAGAGGGGTGGAGGAACCTGATGTCATCTTCCAG
AACTTCTTGCAACAGGCTGCAAGTAACCAGTTAGACTCTTTGATGGGCCTGAGCAATTCACACC
CTGTGGAGGAGAGCATCATTATCCCATGTGAATTCTGTGGGGTACAGCTGGAAGAGGAGGTGCT
GTTCCATCACCAGGACCAGTGTGACCAACGCCCAGCCACTGCAACCAACCATGTGACAGAGGGG
ATTCCTAGACTGGATTCCCAGCCTCAAGAGACCTCACCAGAGCTGCCCAGGAGGCGTGTCAGAC
ACCAGGGAGACCTGTCTTCTGGTTACCTGGATGATACTAAGCAGGAAACAGCTAATGGGCCCAC
CTCCTGTCTGCCTCCCAGCCGACCCATTAACAATATGACAGCTACCTATAACCAGCTATCGAGA
TCAACATCAGGCCCCAGACCTGGGTGCCAGCCCAGCTCTCCTTGTGTGCCGAAGCTCAGCAACT
CAGACAGCCAGGACATCCAGGGGCGGAATCGAGACAGCCAGAATGGGGCCATAGCCCCTGGGCA
CGTTTCAGTGATTCGCCCTCCTCAAAATCTCTACCCAGAAAACATTGTGCCCTCTTTCTCCCCT
GGGCCTTCAGGGAGATACGGAGCTAGTGGTAGGAGTGAAGGTGGCAGGAATTCCCGGGTCACCC
CTGCAGCTGCCAACTACCGCAGCAGAACTGCAAAGGCAAAGCCTTCCAAGCAACAGGGAGCTGG
GGATGCAGAAGAGGAAGAGGAGGAGTAATGGTGTCTCCAGAGACTTTACATCGGTTCCTGTCTT
CTGTGCACAGCAGCACTTGCCGCTGTGCAGGCCCACCTCTTTGGCTCTTTGGGTGGGAGAGTTT
TTCCAGATTTTAGATTTTTCTAGGTTATGGCCATTTTGTGTCTTTTGAGGTTGTGCTGTGGGGG
TTTGGGTTTGAGGGAAGGGAGCAGGGTGGCGGTTGAGGAACGCTTCAGCCTTAGCTGCTACCTT
TCGGCAGCAGTGAAATACAAGCTGCAGCCTCGGCTGCCAGGGCTCCCTTTTGACTTATTGTCGC
CACTGCCCCTTGGTGCTGTGTGGTCCCAGTGGAAGGAGGGGAAGATTTTGGAAACCTGGTAGCC
ACCAGTAAGGTGATTCTCTGCCCTGTTGGGGCCTAAATTTGGGGGCTTTTGGGCAACCTCTCCG
TGTACTGCGTCTGTCCACACTCGATTGGGCCCCAGGTGTGTATGAGGCGCTCTGGTAAGGTGCT
CAGGCCAGTTGCAATGTCTGTCAGTAACGAGGCTTTTGATGTGTTGAGCTGGAGGTGAGTGGAC
CGGGGGCTGTGTTTTAAGCTGCTTCCTTGGCATTTGGCATCACTGCCTTCTGTTCCCGGGGGAG
CATGGATCTTTTGTCCTCACTGCTTTCTAATGGGGAGGGCTGAGGGCTCCCTGTCCCCACAGCA
GGTATGTTGGGCTCTGCCCCAGCCCCACACTTGCTCTGAAAACCAAGTGTCAGAGCCCCTTCCC
CTTGTTTTTATTTTACTGTTATAATAATTATTAACTTCCTTGTAATAGAAATAAAGTTTGTACT
TGGAGTTCA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001137378	(Get FASTA)	NCBI Sequence Viewer
	NP_006691	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH03553	(Get FASTA)	NCBI Sequence Viewer
	BAA22541	(Get FASTA)	NCBI Sequence Viewer
	BAF84020	(Get FASTA)	NCBI Sequence Viewer
	BAG58401	(Get FASTA)	NCBI Sequence Viewer
	CCQ43370	(Get FASTA)	NCBI Sequence Viewer
	EAW97995	(Get FASTA)	NCBI Sequence Viewer
	EAW97996	(Get FASTA)	NCBI Sequence Viewer
	EAW97997	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSP00000257604
	ENSP00000257604.5
	ENSP00000396526
	ENSP00000396526.2
	ENSP00000447340.1
	ENSP00000449297.1
	ENSP00000449319.1
	ENSP00000450357.1
	ENSP00000473800.1
GenBank Protein	O14545	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001137378 ⟸ NM_001143906

- UniProtKB:

A8K5L6 (UniProtKB/Swiss-Prot), B4DI89 (UniProtKB/Swiss-Prot), O14545 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MAEFLDDQETRLCDNCKKEIPVFNFTIHEIHCQRNIGMCPTCKEPFPKSDMETHMAAEHCQVTC
KCNKKLEKRLLKKHEETECPLRLAVCQHCDLELSILKLKEHEDYCGARTELCGNCGRNVLVKDL
KTHPEVCGREGEEKRNEVAIPPNAYDESWGQDGIWIASQLLRQIEALDPPMRLPRRPLRAFESD
VFHNRTTNQRNITAQVSIQNNLFEEQERQERNRGQQPPKEGGEESANLDFMLALSLQNEGQASS
VAEQDFWRAVCEADQSHGGPRSLSDIKGAADEIMLPCEFCEELYPEELLIDHQTSCNPSRALPS
LNTGSSSPRGVEEPDVIFQNFLQQAASNQLDSLMGLSNSHPVEESIIIPCEFCGVQLEEEVLFH
HQDQCDQRPATATNHVTEGIPRLDSQPQETSPELPRRRVRHQGDLSSGYLDDTKQETANGPTSC
LPPSRPINNMTATYNQLSRSTSGPRPGCQPSSPCVPKLSNSDSQDIQGRNRDSQNGAIAPGHVS
VIRPPQNLYPENIVPSFSPGPSGRYGASGRSEGGRNSRVTPAAANYRSRTAKAKPSKQQGAGDA
EEEEEE

hide sequence

RefSeq Acc Id:

NP_006691 ⟸ NM_006700

- UniProtKB:

A8K5L6 (UniProtKB/Swiss-Prot), B4DI89 (UniProtKB/Swiss-Prot), O14545 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MAEFLDDQETRLCDNCKKEIPVFNFTIHEIHCQRNIGMCPTCKEPFPKSDMETHMAAEHCQVTC
KCNKKLEKRLLKKHEETECPLRLAVCQHCDLELSILKLKEHEDYCGARTELCGNCGRNVLVKDL
KTHPEVCGREGEEKRNEVAIPPNAYDESWGQDGIWIASQLLRQIEALDPPMRLPRRPLRAFESD
VFHNRTTNQRNITAQVSIQNNLFEEQERQERNRGQQPPKEGGEESANLDFMLALSLQNEGQASS
VAEQDFWRAVCEADQSHGGPRSLSDIKGAADEIMLPCEFCEELYPEELLIDHQTSCNPSRALPS
LNTGSSSPRGVEEPDVIFQNFLQQAASNQLDSLMGLSNSHPVEESIIIPCEFCGVQLEEEVLFH
HQDQCDQRPATATNHVTEGIPRLDSQPQETSPELPRRRVRHQGDLSSGYLDDTKQETANGPTSC
LPPSRPINNMTATYNQLSRSTSGPRPGCQPSSPCVPKLSNSDSQDIQGRNRDSQNGAIAPGHVS
VIRPPQNLYPENIVPSFSPGPSGRYGASGRSEGGRNSRVTPAAANYRSRTAKAKPSKQQGAGDA
EEEEEE

hide sequence

RefSeq Acc Id:

ENSP00000396526 ⟸ ENST00000412615

RefSeq Acc Id:

ENSP00000257604 ⟸ ENST00000257604

RefSeq Acc Id:

ENSP00000449297 ⟸ ENST00000547063

RefSeq Acc Id:

ENSP00000473800 ⟸ ENST00000548092

RefSeq Acc Id:

ENSP00000449319 ⟸ ENST00000549358

RefSeq Acc Id:

ENSP00000450357 ⟸ ENST00000552896

RefSeq Acc Id:

ENSP00000447340 ⟸ ENST00000552890

Protein Domains

TRAFD1/XAF1 zinc finger

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-O14545-F1-model_v2	AlphaFold	O14545	1-582	view protein structure

Promoters

RGD ID:

6790567

Promoter ID:

HG_KWN:16708

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

CD4+TCell, CD4+TCell_12Hour, CD4+TCell_2Hour, HeLa_S3, Jurkat, K562, Lymphoblastoid, NB4

Transcripts:

UC001TTO.1, UC001TTP.1, UC009ZWB.1

Position:

Human Assembly	Chr	Position (strand)	Source
Build 36	12	111,047,509 - 111,048,009 (+)	MPROMDB

RGD ID:

7225453

Promoter ID:

EPDNEW_H18473

Type:

initiation region

Name:

TRAFD1_1

Description:

TRAF-type zinc finger domain containing 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	12	112,125,560 - 112,125,620	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	HGNC:24808	AgrOrtholog
COSMIC	TRAFD1	COSMIC
Ensembl Genes	ENSG00000135148	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript	ENST00000257604	ENTREZGENE
	ENST00000257604.9	UniProtKB/Swiss-Prot
	ENST00000412615	ENTREZGENE
	ENST00000412615.7	UniProtKB/Swiss-Prot
	ENST00000547063.5	UniProtKB/TrEMBL
	ENST00000548092.5	UniProtKB/TrEMBL
	ENST00000549358.5	UniProtKB/TrEMBL
	ENST00000552890.5	UniProtKB/Swiss-Prot
	ENST00000552896.1	UniProtKB/TrEMBL
Gene3D-CATH	3.30.40.10	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx	ENSG00000135148	GTEx
HGNC ID	HGNC:24808	ENTREZGENE
Human Proteome Map	TRAFD1	Human Proteome Map
InterPro	TRAFD1-XIAF1_Znf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Znf_RING/FYVE/PHD	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	hsa:10906	UniProtKB/Swiss-Prot
NCBI Gene	10906	ENTREZGENE
OMIM	613197	OMIM
PANTHER	TRAF-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN 1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	TRAF-TYPE ZINC FINGER PROTEIN-RELATED	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	TRAFD1-XIAF1_ZnF	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB	PA142670704	PharmGKB
Superfamily-SCOP	TRAF domain-like	UniProtKB/TrEMBL
UniProt	A8K5L6	ENTREZGENE
	B4DI89	ENTREZGENE
	F8VNX8_HUMAN	UniProtKB/TrEMBL
	F8VVF3_HUMAN	UniProtKB/TrEMBL
	F8VWK2_HUMAN	UniProtKB/TrEMBL
	L8E7W3_HUMAN	UniProtKB/TrEMBL
	O14545	ENTREZGENE
	S4R2Z9_HUMAN	UniProtKB/TrEMBL
	TRAD1_HUMAN	UniProtKB/Swiss-Prot
UniProt Secondary	A8K5L6	UniProtKB/Swiss-Prot
	B4DI89	UniProtKB/Swiss-Prot

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD