D9Rat61 Marker Search Result - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

Marker: D9Rat61

Symbol: D9Rat61
Previously known as: oxsts11716; R0083-C04; 
RGD ID: 39096
Expected Size: 198 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8960,379,186 - 60,379,384 (+)Marker Load Pipeline
Rnor_6.0957,832,582 - 57,832,779NCBIRnor6.0
Rnor_5.0957,529,588 - 57,529,785UniSTSRnor5.0
RGSC_v3.4950,062,289 - 50,062,486UniSTSRGSC3.4
RGSC_v3.4950,062,288 - 50,062,486RGDRGSC3.4
RGSC_v3.1950,063,616 - 50,063,983RGD
Celera950,453,991 - 50,454,200UniSTS
SHRSP x BN Map941.0298UniSTS
SHRSP x BN Map941.0298RGD
FHH x ACI Map936.8RGD
Is Marker For: Strains:   AVN/Orl   BBDP/Rhw   BBDR/Rhw   BC/CpbU   BDIX/Han   BDVII/Cub   BN/SsNHsd   BUF/Pit   DA/PitN   DON/Melb   F344/Pit   FHH/Eur   IS/Kyo   LE/Mol   LEW/Pit   LH/Mav   MHS/Gib   MNRA/N   WN/N   WKY/OlaHsd   WTC/Kyo   LOU/CHan   MNR/N   MR/Pit   ODU/N   WIST/Nhg   SR/Jr   MNS/Gib   NP9   OKA/Wsl   OM/Ztm   P5C   PVG/Pit   SD/Rij   SHR/OlaHsd   SHRSP/Riv   WAG/RijKyo   GK/KyoSwe   ACI/N   BN-Lx/Cub   LN/Mav   GH/Omr   NEDH/K   SS/Jr   COP/OlaHsd  


Annotation


References - curated
# Reference Title Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
3. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
4. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer TTTTGAGCAAAATAGAACAATGTG
Reverse Primer AGGCAAATGGGAAAGACAGA
 
Template 
CNATGCCTGCAGGTCGACTCTAGAGGATCCCCACTACATTTGAAAAATATTCTGAATATTTCTT
TAGAGTAGCTTGAGAAAATGTTAAAGCTTTAGTATTCAAATCTCTAGAACAAATAGGCAAATGG
GAAAGACAGACACAGACAGACACACACACACACACACACACACACACACACAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAATACATTAGCAAGCAAAGATAC
TGAACCCTGAAATTGCATAAAGGCTGTGNCTGNNTTAAGCNATNNACACATTGTTCTATTTTGC
TCAAAATAAAACTGTGAAAAGNNGTTTGTCNACTACTCATTCAATTNACCTGCTTGTTACAGAT
TCTGATCATGTCAGAGACAAGANNTGTGNNNNNGNGCTCGNATTCGNNATNNTGGTCATNGCTG
TTTCNGTGTGAATTNNTATNCGCNCACAA

Region

Nucleotide Sequences
GenBank Nucleotide CH473965 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000239 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information