VAMP2 (vesicle associated membrane protein 2) - Rat Genome Database

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Gene: VAMP2 (vesicle associated membrane protein 2) Pan paniscus
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Symbol: VAMP2
Name: vesicle associated membrane protein 2
RGD ID: 11832484
Description: ENCODES a protein that exhibits calcium-dependent protein binding (ortholog); calmodulin binding (ortholog); identical protein binding (ortholog); INVOLVED IN calcium-ion regulated exocytosis (ortholog); cellular response to insulin stimulus (ortholog); establishment of localization in cell (ortholog); PARTICIPATES IN insulin responsive facilitative sugar transporter mediated glucose transport pathway; insulin secretion pathway; vasopressin signaling pathway; ASSOCIATED WITH common variable immunodeficiency (ortholog); Diamond-Blackfan anemia (ortholog); dyskeratosis congenita (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic vesicle membrane (ortholog); glutamatergic synapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: vesicle-associated membrane protein 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21965,589,912 - 65,594,126 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11770,399,645 - 70,403,527 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01743,495,464 - 43,499,348 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11748,228,253 - 48,231,948 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1748,228,253 - 48,231,948 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
VAMP2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21965,589,912 - 65,594,126 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11770,399,645 - 70,403,527 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01743,495,464 - 43,499,348 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11748,228,253 - 48,231,948 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1748,228,253 - 48,231,948 (+)Ensemblpanpan1.1panPan2
VAMP2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38178,159,147 - 8,162,948 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl178,159,149 - 8,163,546 (-)EnsemblGRCh38hg38GRCh38
GRCh37178,062,465 - 8,066,266 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36178,003,189 - 8,007,017 (-)NCBINCBI36Build 36hg18NCBI36
Build 34178,003,188 - 8,007,017NCBI
Celera178,089,806 - 8,093,640 (-)NCBICelera
Cytogenetic Map17p13.1NCBI
HuRef177,957,475 - 7,960,724 (-)NCBIHuRef
CHM1_1178,071,269 - 8,075,097 (-)NCBICHM1_1
T2T-CHM13v2.0178,064,587 - 8,068,400 (-)NCBIT2T-CHM13v2.0
Vamp2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391168,979,354 - 68,983,207 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1168,979,316 - 68,983,210 (+)EnsemblGRCm39 Ensembl
GRCm381169,088,528 - 69,092,381 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1169,088,490 - 69,092,384 (+)EnsemblGRCm38mm10GRCm38
MGSCv371168,902,030 - 68,905,883 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361168,904,723 - 68,908,576 (+)NCBIMGSCv36mm8
Celera1176,032,081 - 76,035,943 (+)NCBICelera
Cytogenetic Map11B3NCBI
cM Map1142.36NCBI
Vamp2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81054,292,423 - 54,296,657 (+)NCBIGRCr8
mRatBN7.21053,793,581 - 53,797,815 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1053,793,923 - 53,797,809 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1058,455,722 - 58,459,585 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01057,944,320 - 57,948,183 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01053,452,495 - 53,456,350 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01055,675,171 - 55,679,405 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1055,675,575 - 55,679,450 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01055,418,231 - 55,422,465 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41055,848,264 - 55,852,132 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11055,861,886 - 55,865,753 (+)NCBI
Celera1052,959,486 - 52,963,354 (+)NCBICelera
Cytogenetic Map10q24NCBI
Vamp2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554678,793,296 - 8,796,771 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554678,793,296 - 8,796,771 (+)NCBIChiLan1.0ChiLan1.0
VAMP2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1532,975,372 - 32,977,967 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha533,111,535 - 33,114,048 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0533,078,395 - 33,080,876 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl533,077,052 - 33,080,884 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1533,045,188 - 33,047,701 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0533,000,996 - 33,003,510 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0533,180,938 - 33,183,450 (-)NCBIUU_Cfam_GSD_1.0
Vamp2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560247,911,504 - 47,915,326 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365951,385,695 - 1,389,552 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365951,385,692 - 1,389,484 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
VAMP2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1253,378,409 - 53,382,240 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11253,378,407 - 53,382,243 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21255,853,614 - 55,857,435 (-)NCBISscrofa10.2Sscrofa10.2susScr3
VAMP2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1167,539,098 - 7,542,466 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605913,862,312 - 13,866,164 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Vamp2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478610,724,964 - 10,727,649 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478610,723,791 - 10,727,654 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSPPAT00000024475   ⟹   ENSPPAP00000005396
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1748,228,253 - 48,231,948 (+)Ensembl
RefSeq Acc Id: XM_003818056   ⟹   XP_003818104
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21965,590,403 - 65,594,126 (+)NCBI
NHGRI_mPanPan11770,399,803 - 70,403,527 (+)NCBI
Mhudiblu_PPA_v01743,495,625 - 43,499,348 (+)NCBI
PanPan1.11748,228,253 - 48,231,948 (+)NCBI
Sequence:
RefSeq Acc Id: XM_034942416   ⟹   XP_034798307
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21965,589,912 - 65,594,126 (+)NCBI
NHGRI_mPanPan11770,399,645 - 70,403,527 (+)NCBI
Mhudiblu_PPA_v01743,495,464 - 43,499,348 (+)NCBI
Protein Sequences
Protein RefSeqs XP_003818104 (Get FASTA)   NCBI Sequence Viewer  
  XP_034798307 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000005396
  ENSPPAP00000005396.1
RefSeq Acc Id: XP_003818104   ⟸   XM_003818056
- Peptide Label: isoform X1
- UniProtKB: A0A2R8ZRD6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_034798307   ⟸   XM_034942416
- Peptide Label: isoform X2
RefSeq Acc Id: ENSPPAP00000005396   ⟸   ENSPPAT00000024475

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000022280 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000024475.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.110 UniProtKB/TrEMBL
InterPro Synaptobrevin UniProtKB/TrEMBL
  Synaptobrevin/VAMP UniProtKB/TrEMBL
  V_SNARE_CC UniProtKB/TrEMBL
KEGG Report pps:100973651 UniProtKB/TrEMBL
NCBI Gene VAMP2 ENTREZGENE
PANTHER PTHR45701 UniProtKB/TrEMBL
  PTHR45701:SF5 UniProtKB/TrEMBL
Pfam Synaptobrevin UniProtKB/TrEMBL
PIRSF Synaptobrevin_euk UniProtKB/TrEMBL
PRINTS SYNAPTOBREVN UniProtKB/TrEMBL
PROSITE SYNAPTOBREVIN UniProtKB/TrEMBL
  V_SNARE UniProtKB/TrEMBL
Superfamily-SCOP SNARE fusion complex UniProtKB/TrEMBL
UniProt A0A2R8ZRD6 ENTREZGENE, UniProtKB/TrEMBL