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Pathways

POLYAMINE METABOLIC PATHWAY (PW:0000214)

View Ontology Report

Description

The polyamines are cations that interact with DNA, RNA, proteins and other molecules to fulfill important roles in cell growth, proliferation and survival. They can be derived from food intake or from cellular and intestinal flora mediated biosynthesis. Mammals only synthesize putrescine, spermidine and spermine. Putrescine is derived from L-ornithine by the action of ornithine decarboxylase ODC ; L-ornithine is also an important component of the urea cycle. Putrescine is the substrate for the f

Pathway Diagram:

Ariadne Genomics Inc. S-adenosylmethionine methionine cycle/metabolic pathway S-adenosylmethioninamine putrescine ---> spermidine Srm spermidine ---> spermine spermine ---> spermidine Ornithine ---> putrescine Odc dimer urea cycle pathway Oaz1 ---| Odc dimer spermine ---> N-acetylspermine N-acetylspermine ---> spermidine Sms Azin1 ---| Oaz2 Azin1 ---| Oaz1 Oaz2 ---| Odc dimer Odc1 <--> Odc dimer Azin1 ---| Oaz3 Oaz3 ---| Odc dimer Oaz2 ---- Odc1 Oaz3 ---- Odc1 Oaz1 ---- Odc1 Ornithine putrescine spermidine spermine N-acetylspermidine N-acetylspermine Odc1 Oaz2 Oaz3 Oaz1 Azin1 S-adenosylmethionine ---> S-adenosylmethioninamine Amd1 Smox Sat1 Paox N-acetylspermidine ---> putrescine spermidine ---> N-acetylspermidine S-adenosylmethioninamine ---> spermidine S-adenosylmethioninamine ---> spermine
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Genes in Pathway:


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polyamine metabolic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Amd1 adenosylmethionine decarboxylase 1 IDA
ISO
RGD PMID:10430362 PMID:13678416 RGD:1578320, RGD:7244193 NCBI chr20:45,250,289...45,324,939
Ensembl chr20:45,250,289...45,265,982
JBrowse link
G Azin1 antizyme inhibitor 1 ISO RGD PMID:21849468 RGD:7244195 NCBI chr 7:71,539,711...71,566,515
Ensembl chr 7:71,539,711...71,566,515
JBrowse link
G Oaz1 ornithine decarboxylase antizyme 1 ISO RGD PMID:21849468 RGD:7244195 NCBI chr 7:9,534,530...9,536,990
Ensembl chr 7:9,533,811...9,536,990
JBrowse link
G Oaz2 ornithine decarboxylase antizyme 2 ISO RGD PMID:21849468 RGD:7244195 NCBI chr 8:75,094,817...75,108,634
Ensembl chr 8:75,094,798...75,108,630
JBrowse link
G Oaz3 ornithine decarboxylase antizyme 3 ISO RGD PMID:21849468 RGD:7244195 NCBI chr 2:184,762,242...184,765,176
Ensembl chr 2:184,762,245...184,771,428
JBrowse link
G Odc1 ornithine decarboxylase 1 IDA
ISO
RGD PMID:10430362 PMID:13678416 RGD:1578320, RGD:7244193 NCBI chr 6:46,058,439...46,065,148
Ensembl chr 6:46,058,463...46,065,146
JBrowse link
G Paox polyamine oxidase IDA
ISO
RGD PMID:15541750 PMID:13678416 RGD:7244190, RGD:7244193 NCBI chr 1:204,349,326...204,358,140
Ensembl chr 1:204,348,987...204,358,481
JBrowse link
G Sat1 spermidine/spermine N1-acetyl transferase 1 IDA
ISO
TAS
RGD PMID:15541750 PMID:13678416 PMID:13678416 RGD:7244190, RGD:7244193, RGD:7244193 NCBI chr  X:44,008,089...44,011,376
Ensembl chr  X:44,006,781...44,011,374
JBrowse link
G Smox spermine oxidase IDA
ISO
RGD PMID:15541750 PMID:13678416 RGD:7244190, RGD:7244193 NCBI chr 3:139,184,793...139,220,174
Ensembl chr 3:139,184,798...139,220,170
Ensembl chr  X:139,184,798...139,220,170
JBrowse link
G Sms spermine synthase ISO RGD PMID:13678416 RGD:7244193 NCBI chr  X:41,331,693...41,387,713
Ensembl chr  X:41,331,799...41,387,712
JBrowse link
G Srm spermidine synthase ISO RGD PMID:13678416 RGD:7244193 NCBI chr 5:164,309,002...164,312,203
Ensembl chr 5:164,308,991...164,332,705
JBrowse link
putrescine metabolic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Amd1 adenosylmethionine decarboxylase 1 IDA RGD PMID:10430362 RGD:1578320 NCBI chr20:45,250,289...45,324,939
Ensembl chr20:45,250,289...45,265,982
JBrowse link
G Odc1 ornithine decarboxylase 1 IDA RGD PMID:10430362 RGD:1578320 NCBI chr 6:46,058,439...46,065,148
Ensembl chr 6:46,058,463...46,065,146
JBrowse link
spermidine metabolic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Amd1 adenosylmethionine decarboxylase 1 IDA
IMP
ISO
SMPDB
RGD
PMID:10430362 PMID:10712236 PMID:1415709 SMP:00445, RGD:1578320, RGD:7242911, RGD:7242912 NCBI chr20:45,250,289...45,324,939
Ensembl chr20:45,250,289...45,265,982
JBrowse link
G Mat2a methionine adenosyltransferase 2A ISO SMPDB SMP:00445 NCBI chr 4:106,048,043...106,053,612
Ensembl chr 4:106,038,254...106,053,645
JBrowse link
G Mat2b methionine adenosyltransferase 2 non-catalytic beta subunit ISO SMPDB SMP:00445 NCBI chr10:25,609,202...25,626,694
Ensembl chr10:25,609,204...25,625,176
JBrowse link
G Odc1 ornithine decarboxylase 1 IDA
IMP
ISO
SMPDB
RGD
PMID:10430362 PMID:1415709 PMID:2292587 SMP:00445, RGD:1578320, RGD:7242912, RGD:7242932 NCBI chr 6:46,058,439...46,065,148
Ensembl chr 6:46,058,463...46,065,146
JBrowse link
G Sat1 spermidine/spermine N1-acetyl transferase 1 IMP RGD PMID:2292587 RGD:7242932 NCBI chr  X:44,008,089...44,011,376
Ensembl chr  X:44,006,781...44,011,374
JBrowse link
G Sms spermine synthase ISO SMPDB SMP:00445 NCBI chr  X:41,331,693...41,387,713
Ensembl chr  X:41,331,799...41,387,712
JBrowse link
G Srm spermidine synthase ISO
IDA
IMP
SMPDB
RGD
PMID:23073625 PMID:16931179 PMID:2292587 SMP:00445, RGD:7242425, RGD:7242920, RGD:7242932 NCBI chr 5:164,309,002...164,312,203
Ensembl chr 5:164,308,991...164,332,705
JBrowse link
spermine metabolic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Amd1 adenosylmethionine decarboxylase 1 IDA
ISO
IMP
SMPDB
RGD
PMID:10430362 PMID:1415709 PMID:10712236 SMP:00445, RGD:1578320, RGD:7242912, RGD:7242911 NCBI chr20:45,250,289...45,324,939
Ensembl chr20:45,250,289...45,265,982
JBrowse link
G Mat2a methionine adenosyltransferase 2A ISO SMPDB SMP:00445 NCBI chr 4:106,048,043...106,053,612
Ensembl chr 4:106,038,254...106,053,645
JBrowse link
G Mat2b methionine adenosyltransferase 2 non-catalytic beta subunit ISO SMPDB SMP:00445 NCBI chr10:25,609,202...25,626,694
Ensembl chr10:25,609,204...25,625,176
JBrowse link
G Odc1 ornithine decarboxylase 1 IDA
ISO
IMP
SMPDB
RGD
PMID:10430362 PMID:2292587 PMID:1415709 SMP:00445, RGD:1578320, RGD:7242932, RGD:7242912 NCBI chr 6:46,058,439...46,065,148
Ensembl chr 6:46,058,463...46,065,146
JBrowse link
G Sat1 spermidine/spermine N1-acetyl transferase 1 IMP RGD PMID:2292587 RGD:7242932 NCBI chr  X:44,008,089...44,011,376
Ensembl chr  X:44,006,781...44,011,374
JBrowse link
G Sms spermine synthase ISO
IMP
SMPDB
RGD
PMID:23073625 PMID:2292587 SMP:00445, RGD:7242425, RGD:7242932 NCBI chr  X:41,331,693...41,387,713
Ensembl chr  X:41,331,799...41,387,712
JBrowse link
G Srm spermidine synthase ISO SMPDB SMP:00445 NCBI chr 5:164,309,002...164,312,203
Ensembl chr 5:164,308,991...164,332,705
JBrowse link

Pathway Gene Annotations

Disease Annotations Associated with Genes in the polyamine metabolic pathway
Pathway Annotations Associated with Genes in the polyamine metabolic pathway
Phenotype Annotations Associated with Genes in the polyamine metabolic pathway
Phenotype TermsGene Symbols
enlarged kidneyOdc1

References Associated with the polyamine metabolic pathway:

Ontology Path Diagram:

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paths to the root

Import into Pathway Studio: