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ONTOLOGY REPORT - ANNOTATIONS

Term:double-stranded RNA binding
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Accession:GO:0003725 term browser browse the term
Definition:Binding to double-stranded RNA.
Synonyms:exact_synonym: dsRNA binding


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double-stranded RNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G A1CF APOBEC1 complementation factor NOT|enables ISO (PMID:11871661) UniProt PMID:11871661 NCBI chr10:47,451,293...47,538,062
Ensembl chr10:49,588,168...49,675,543 		JBrowse link
G ACTN1 actinin alpha 1 enables IEA Ensembl GO_REF:0000107 NCBI chr14:49,460,390...49,565,986
Ensembl chr14:68,335,694...68,440,836 		JBrowse link
G ADAD1 adenosine deaminase domain containing 1 enables IEA TreeGrafter GO_REF:0000118 NCBI chr 4:114,574,953...114,625,948
Ensembl chr 4:125,710,502...125,760,980 		JBrowse link
G ADAD2 adenosine deaminase domain containing 2 enables IEA TreeGrafter GO_REF:0000118 NCBI chr16:64,856,014...64,862,493
Ensembl chr16:84,198,190...84,204,243 		JBrowse link
G ADARB1 adenosine deaminase RNA specific B1 enables ISO
IEA		 RGD
TreeGrafter		 PMID:16472753 GO_REF:0000118 RGD:10755334 NCBI chr21:31,374,841...31,532,721
Ensembl chr21:44,715,931...44,815,748 		JBrowse link
G ADARB2 adenosine deaminase RNA specific B2 (inactive) enables IEA TreeGrafter GO_REF:0000118 NCBI chr10:1,219,560...1,786,418
Ensembl chr10:1,268,327...1,449,173 		JBrowse link
G AGO1 argonaute RISC component 1 enables IEA Ensembl GO_REF:0000107 NCBI chr 1:35,148,984...35,196,252
Ensembl chr 1:36,324,733...36,360,832 		JBrowse link
G AGO2 argonaute RISC catalytic component 2 enables IEA Ensembl GO_REF:0000107 NCBI chr 8:137,192,037...137,308,059
Ensembl chr 8:140,287,647...140,361,125 		JBrowse link
G AGO3 argonaute RISC catalytic component 3 enables IEA Ensembl GO_REF:0000107 NCBI chr 1:35,196,371...35,322,220
Ensembl chr 1:36,372,221...36,497,190 		JBrowse link
G APTX aprataxin enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 9:32,747,409...32,819,270
Ensembl chr 9:33,556,419...33,585,060 		JBrowse link
G CLTC clathrin heavy chain enables IEA Ensembl GO_REF:0000107 NCBI chr17:53,685,865...53,761,008
Ensembl chr17:58,529,750...58,603,636 		JBrowse link
G DDX1 DEAD-box helicase 1 enables IEA Ensembl GO_REF:0000107 NCBI chr2A:15,582,499...15,619,751
Ensembl chr2A:15,716,044...15,753,623 		JBrowse link
G DDX21 DExD-box helicase 21 enables IEA Ensembl GO_REF:0000107 NCBI chr10:65,423,319...65,452,266
Ensembl chr10:67,956,857...67,985,867 		JBrowse link
G DDX60 DExD/H-box helicase 60 enables ISO (PMID:21791617) UniProt PMID:21791617 NCBI chr 4:160,376,930...160,532,561 JBrowse link
G DDX60L DExD/H-box 60 like enables IEA TreeGrafter GO_REF:0000118 NCBI chr 4:160,564,376...160,687,650
Ensembl chr 4:172,643,134...172,757,278 		JBrowse link
G DGCR8 DGCR8 microprocessor complex subunit enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr22:2,841,041...2,872,325
Ensembl chr22:18,518,783...18,544,740 		JBrowse link
G DHX15 DEAH-box helicase 15 enables IEA Ensembl GO_REF:0000107 NCBI chr 4:18,931,119...18,988,048
Ensembl chr 4:24,217,123...24,273,585 		JBrowse link
G DHX30 DExH-box helicase 30 enables IEA Ensembl GO_REF:0000107 NCBI chr 3:47,715,275...47,762,872
Ensembl chr 3:48,819,125...48,857,964 		JBrowse link
G DHX33 DEAH-box helicase 33 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr17:5,490,642...5,517,192
Ensembl chr17:5,484,093...5,508,926 		JBrowse link
G DHX36 DEAH-box helicase 36 enables IEA Ensembl GO_REF:0000107 NCBI chr 3:151,331,468...151,382,406
Ensembl chr 3:158,885,541...158,935,871 		JBrowse link
G DHX58 DExH-box helicase 58 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr17:15,203,216...15,214,559
Ensembl chr17:15,424,437...15,435,582 		JBrowse link
G DHX9 DExH-box helicase 9 enables IEA Ensembl
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr 1:158,355,472...158,404,178
Ensembl chr 1:162,006,822...162,055,833 		JBrowse link
G DICER1 dicer 1, ribonuclease III enables IEA Ensembl GO_REF:0000107 NCBI chr14:75,709,029...75,780,779
Ensembl chr14:95,036,385...95,107,940 		JBrowse link
G DROSHA drosha ribonuclease III enables IEA TreeGrafter GO_REF:0000118 NCBI chr 5:78,813,923...78,945,149
Ensembl chr 5:84,194,546...84,322,310 		JBrowse link
G DUS2 dihydrouridine synthase 2 enables IEA Ensembl GO_REF:0000107 NCBI chr16:48,355,186...48,450,121
Ensembl chr16:67,787,953...67,845,287 		JBrowse link
G EIF2AK2 eukaryotic translation initiation factor 2 alpha kinase 2 enables IEA InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000107 NCBI chr2A:37,130,386...37,184,587
Ensembl chr2A:37,895,814...37,941,686 		JBrowse link
G EIF4A1 eukaryotic translation initiation factor 4A1 enables IEA Ensembl GO_REF:0000107 NCBI chr17:7,604,331...7,610,302
Ensembl chr17:7,590,569...7,596,876 		JBrowse link
G ELAVL1 ELAV like RNA binding protein 1 enables IEA Ensembl GO_REF:0000107 NCBI chr19:7,259,829...7,306,808
Ensembl chr19:8,114,849...8,147,137 		JBrowse link
G HMGB1 high mobility group box 1 enables IEA Ensembl GO_REF:0000107 NCBI chr13:11,737,942...11,894,923
Ensembl chr13:30,174,899...30,179,527 		JBrowse link
G HNRNPU heterogeneous nuclear ribonucleoprotein U enables IEA Ensembl GO_REF:0000107 NCBI chr 1:220,450,218...220,461,412
Ensembl chr 1:225,817,899...225,842,031 		JBrowse link
G HSP90AB1 heat shock protein 90 alpha family class B member 1 enables ISO (PMID:21266579) MGI PMID:21266579 NCBI chr 6:43,842,796...43,849,637
Ensembl chr 6:45,125,773...45,133,872 		JBrowse link
G HSPD1 heat shock protein family D (Hsp60) member 1 enables IEA Ensembl GO_REF:0000107 NCBI chr2B:84,729,615...84,743,352
Ensembl chr2B:202,623,497...202,636,959 		JBrowse link
G IFIH1 interferon induced with helicase C domain 1 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr2B:49,560,620...49,612,086
Ensembl chr2B:166,928,994...166,980,170 		JBrowse link
G ILF2 interleukin enhancer binding factor 2 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 1:129,018,622...129,027,550
Ensembl chr 1:132,647,296...132,656,361 		JBrowse link
G ILF3 interleukin enhancer binding factor 3 enables IEA InterPro
TreeGrafter
Ensembl		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr19:10,206,636...10,244,779
Ensembl chr19:10,867,143...10,905,953 		JBrowse link
G LOC100971602 tubulin beta-2B chain enables IEA Ensembl GO_REF:0000107 NCBI chr 6:3,063,074...3,066,315
Ensembl chr 6:3,080,751...3,255,882 		JBrowse link
G LOC100975612 eukaryotic initiation factor 4A-I enables IEA Ensembl GO_REF:0000107 NCBI chr 4:10,359,045...10,360,524 JBrowse link
G LOC100977537 argonaute RISC component 4 enables IEA Ensembl GO_REF:0000107 NCBI chr 1:35,072,045...35,122,418
Ensembl chr 1:36,249,038...36,299,259 		JBrowse link
G LOC103782837 tubulin alpha-1B chain enables IEA Ensembl GO_REF:0000107 NCBI chr12:39,619,964...39,623,611
Ensembl chr12:40,498,933...40,502,630 		JBrowse link
G LOC103786029 myosin-4 enables IEA Ensembl GO_REF:0000107 NCBI chr17:41,183,808...41,209,774
Ensembl chr17:45,931,196...45,957,149 		JBrowse link
G LSM14A LSM14A mRNA processing body assembly factor enables ISO (PMID:22745163) MGI PMID:22745163 NCBI chr19:31,099,211...31,159,930
Ensembl chr19:39,831,117...39,891,794 		JBrowse link
G MBNL1 muscleblind like splicing regulator 1 enables IEA Ensembl GO_REF:0000107 NCBI chr 3:149,288,323...149,487,635
Ensembl chr 3:156,888,763...157,054,207 		JBrowse link
G MRPL44 mitochondrial ribosomal protein L44 enables IEA InterPro GO_REF:0000002 NCBI chr2B:111,203,655...111,213,888
Ensembl chr2B:229,779,983...229,790,240 		JBrowse link
G MSN moesin enables IEA Ensembl GO_REF:0000107 NCBI chr  X:54,785,309...54,859,364
Ensembl chr  X:64,781,550...64,933,292 		JBrowse link
G MTDH metadherin enables IEA Ensembl GO_REF:0000107 NCBI chr 8:94,282,432...94,368,516
Ensembl chr 8:96,473,247...96,551,341 		JBrowse link
G NLRP1 NLR family pyrin domain containing 1 enables IEA Ensembl GO_REF:0000107 NCBI chr17:5,562,129...5,667,765
Ensembl chr17:5,542,007...5,623,091 		JBrowse link
G NLRP6 NLR family pyrin domain containing 6 enables IEA Ensembl GO_REF:0000107 NCBI chr11:274,904...281,590
Ensembl chr11:319,082...325,888 		JBrowse link
G OAS1 2'-5'-oligoadenylate synthetase 1 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr12:110,511,984...110,525,343
Ensembl chr12:113,896,760...113,921,814 		JBrowse link
G OAS2 2'-5'-oligoadenylate synthetase 2 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118
G OAS3 2'-5'-oligoadenylate synthetase 3 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr12:110,543,522...110,578,463
Ensembl chr12:113,928,202...113,959,654
Ensembl chr12:113,928,202...113,959,654 		JBrowse link
G OASL 2'-5'-oligoadenylate synthetase like enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr12:118,602,088...118,621,056
Ensembl chr12:121,971,880...121,990,855 		JBrowse link
G PRKRA protein activator of interferon induced protein kinase EIF2AK2 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr2B:65,689,029...65,708,493
Ensembl chr2B:183,393,819...183,413,174 		JBrowse link
G PRKRIP1 PRKR interacting protein 1 enables IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr 7:94,515,712...94,567,066
Ensembl chr13:24,723,062...24,734,122 		JBrowse link
G RC3H1 ring finger and CCCH-type domains 1 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 1:149,454,748...149,539,566
Ensembl chr 1:153,160,661...153,213,402 		JBrowse link
G RC3H2 ring finger and CCCH-type domains 2 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 9:93,975,164...94,031,516
Ensembl chr 9:122,313,791...122,365,102 		JBrowse link
G RFTN1 raftlin, lipid raft linker 1 enables IEA Ensembl GO_REF:0000107 NCBI chr 3:16,241,255...16,441,402
Ensembl chr 3:16,578,092...16,778,464 		JBrowse link
G RIGI RNA sensor RIG-I enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 9:32,230,012...32,302,159
Ensembl chr 9:33,040,000...33,110,557 		JBrowse link
G SIDT1 SID1 transmembrane family member 1 enables IEA TreeGrafter GO_REF:0000118 NCBI chr 3:110,674,270...110,771,758
Ensembl chr 3:117,629,626...117,690,849 		JBrowse link
G SIDT2 SID1 transmembrane family member 2 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr11:112,012,734...112,031,403
Ensembl chr11:115,946,725...115,963,408 		JBrowse link
G SLC3A2 solute carrier family 3 member 2 enables IEA Ensembl GO_REF:0000107 NCBI chr11:58,212,395...58,241,686
Ensembl chr11:61,565,680...61,594,579 		JBrowse link
G SNHG32 small nucleolar RNA host gene 32 enables ISO (PMID:12396720) MGI PMID:12396720 NCBI chr 6:31,496,087...31,500,957 JBrowse link
G STAU1 staufen double-stranded RNA binding protein 1 enables ISO
IEA		 RGD
TreeGrafter		 PMID:11145988 GO_REF:0000118 RGD:634222 NCBI chr20:45,452,639...45,526,512
Ensembl chr20:46,517,772...46,578,024 		JBrowse link
G STAU2 staufen double-stranded RNA binding protein 2 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 8:69,958,735...70,283,591
Ensembl chr 8:71,606,583...71,929,167 		JBrowse link
G STRBP spermatid perinuclear RNA binding protein enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 9:94,249,017...94,395,796
Ensembl chr 9:122,586,575...122,640,167 		JBrowse link
G SUPV3L1 Suv3 like RNA helicase enables IEA Ensembl GO_REF:0000107 NCBI chr10:65,647,273...65,676,179
Ensembl chr10:68,180,671...68,209,538 		JBrowse link
G TARBP2 TARBP2 subunit of RISC loading complex enables IEA InterPro
TreeGrafter
Ensembl		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr12:35,246,937...35,253,378
Ensembl chr12:36,031,818...36,038,008 		JBrowse link
G TFRC transferrin receptor enables IEA Ensembl GO_REF:0000107 NCBI chr 3:193,384,817...193,417,532
Ensembl chr 3:203,333,953...203,373,998 		JBrowse link
G TLR3 toll like receptor 3 enables ISO
IEA		 poly(I:C) - a synthetic analog of double-stranded RNA, a molecular pattern associated with viral infection RGD
Ensembl		 PMID:16973131 GO_REF:0000107 RGD:1643119 NCBI chr 4:178,238,352...178,256,264
Ensembl chr 4:190,446,487...190,462,728 		JBrowse link
G TLR7 toll like receptor 7 enables IEA Ensembl GO_REF:0000107 NCBI chr  X:5,479,247...5,504,810
Ensembl chr  X:12,767,981...12,790,517 		JBrowse link
G TLR8 toll like receptor 8 enables IEA Ensembl GO_REF:0000107 NCBI chr  X:5,518,742...5,535,304 JBrowse link
G TUBB tubulin beta class I enables IEA Ensembl GO_REF:0000107 NCBI chr 6:30,465,367...30,470,451 JBrowse link
G TUBB2A tubulin beta 2A class IIa enables IEA Ensembl GO_REF:0000107 NCBI chr 6:2,993,653...2,997,570
Ensembl chr 6:3,080,751...3,255,882 		JBrowse link
G TUBB4A tubulin beta 4A class IVa enables IEA Ensembl GO_REF:0000107 NCBI chr19:5,521,425...5,529,958
Ensembl chr19:6,441,323...6,451,785 		JBrowse link
G TUBB4B tubulin beta 4B class IVb enables IEA Ensembl GO_REF:0000107 NCBI chr 9:108,300,868...108,303,321
Ensembl chr 9:137,268,942...137,271,758 		JBrowse link
G TUBB8 tubulin beta 8 class VIII enables IEA Ensembl GO_REF:0000107 NCBI chr10:56,937...61,125
Ensembl chr10:140,194...142,372 		JBrowse link
G VIM vimentin enables IEA Ensembl GO_REF:0000107 NCBI chr10:17,546,389...17,554,702
Ensembl chr10:17,818,285...17,826,642 		JBrowse link
G YRDC yrdC N6-threonylcarbamoyltransferase domain containing enables IEA InterPro GO_REF:0000002 NCBI chr 1:37,077,653...37,082,929 JBrowse link
G ZBP1 Z-DNA binding protein 1 enables ISO (MGI:6434626|PMID:32296175), (MGI:6436412|PMID:32200799) UniProt PMID:32200799 PMID:32296175 MGI:6434626 MGI:6436412 NCBI chr20:53,944,224...53,961,362
Ensembl chr20:55,222,405...55,239,130 		JBrowse link
G ZFR zinc finger RNA binding protein enables IEA TreeGrafter GO_REF:0000118 NCBI chr 5:77,890,015...77,980,332
Ensembl chr 5:83,295,040...83,361,615 		JBrowse link
G ZFR2 zinc finger RNA binding protein 2 enables IEA TreeGrafter GO_REF:0000118 NCBI chr19:2,827,501...2,894,084
Ensembl chr19:3,777,714...3,842,444 		JBrowse link
G ZNF346 zinc finger protein 346 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 5:172,321,875...172,386,462
Ensembl chr 5:179,390,239...179,449,071 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  molecular_function 17493
    binding 16142
      organic cyclic compound binding 5204
        nucleic acid binding 3267
          RNA binding 1169
            double-stranded RNA binding 81
              RNA strand-exchange activity 0
              double-stranded miRNA binding 0
paths to the root