LOC100971602 (tubulin beta-2B chain) - Rat Genome Database

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Gene: LOC100971602 (tubulin beta-2B chain) Pan paniscus
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Symbol: LOC100971602 (Ensembl: TUBB2B)
Name: tubulin beta-2B chain (Ensembl:tubulin beta 2B class IIb)
RGD ID: 11693061
Description: ENCODES a protein that exhibits double-stranded RNA binding (inferred); GTP binding (inferred); GTPase activity (inferred); INVOLVED IN cerebral cortex development (inferred); cytoskeleton organization (inferred); embryonic brain development (inferred); FOUND IN axonemal microtubule (inferred); cytoplasm (inferred); cytoskeleton (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: TUBB2B; tubulin, beta 2B class IIb
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2517,856,446 - 17,860,525 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1613,860,009 - 13,864,088 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v063,063,074 - 3,066,315 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.163,252,385 - 3,255,882 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl63,080,751 - 3,255,882 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003806699 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSPPAT00000044655   ⟹   ENSPPAP00000021851
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl63,080,751 - 3,084,326 (-)Ensembl
Ensembl Acc Id: ENSPPAT00000044658   ⟹   ENSPPAP00000021853
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl63,083,427 - 3,255,652 (-)Ensembl
Ensembl Acc Id: ENSPPAT00000044663   ⟹   ENSPPAP00000021859
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl63,250,926 - 3,253,759 (-)Ensembl
Ensembl Acc Id: ENSPPAT00000044747   ⟹   ENSPPAP00000021943
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl63,252,385 - 3,255,882 (-)Ensembl
Ensembl Acc Id: ENSPPAT00000044780   ⟹   ENSPPAP00000021975
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl63,252,828 - 3,255,652 (-)Ensembl
RefSeq Acc Id: XM_003806699   ⟹   XP_003806747
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2517,856,446 - 17,860,525 (-)NCBI
NHGRI_mPanPan1613,860,009 - 13,864,088 (-)NCBI
Mhudiblu_PPA_v063,063,074 - 3,066,315 (-)NCBI
PanPan1.163,252,385 - 3,255,882 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003806747 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000021851.1
  ENSPPAP00000021859.1
  ENSPPAP00000021943
  ENSPPAP00000021943.1
  ENSPPAP00000021975.1
  ENSPPAP00000022347.1
RefSeq Acc Id: XP_003806747   ⟸   XM_003806699
- UniProtKB: A0A2R9AXC7 (UniProtKB/TrEMBL),   A0A2R9B2G9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSPPAP00000021975   ⟸   ENSPPAT00000044780
Ensembl Acc Id: ENSPPAP00000021943   ⟸   ENSPPAT00000044747
Ensembl Acc Id: ENSPPAP00000021851   ⟸   ENSPPAT00000044655
Ensembl Acc Id: ENSPPAP00000021853   ⟸   ENSPPAT00000044658
Ensembl Acc Id: ENSPPAP00000021859   ⟸   ENSPPAT00000044663
Protein Domains
Tubulin/FtsZ 2-layer sandwich   Tubulin/FtsZ GTPase


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000034122 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSPPAG00000034369 UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000044655.1 UniProtKB/TrEMBL
  ENSPPAT00000044663.1 UniProtKB/TrEMBL
  ENSPPAT00000044747.1 UniProtKB/TrEMBL
  ENSPPAT00000044780.1 UniProtKB/TrEMBL
  ENSPPAT00000045156.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.287.600 UniProtKB/TrEMBL
  3.30.1330.20 UniProtKB/TrEMBL
  3.40.50.1440 UniProtKB/TrEMBL
InterPro Beta-tubulin_BS UniProtKB/TrEMBL
  Beta_tubulin UniProtKB/TrEMBL
  Tub_FtsZ_C UniProtKB/TrEMBL
  Tubulin UniProtKB/TrEMBL
  Tubulin/FtsZ-like_C UniProtKB/TrEMBL
  Tubulin/FtsZ_2-layer-sand-dom UniProtKB/TrEMBL
  Tubulin/FtsZ_GTPase_sf UniProtKB/TrEMBL
  Tubulin_C UniProtKB/TrEMBL
  Tubulin_CS UniProtKB/TrEMBL
  Tubulin_FtsZ_GTPase UniProtKB/TrEMBL
KEGG Report pps:100971602 UniProtKB/TrEMBL
NCBI Gene LOC100971602 ENTREZGENE
PANTHER PTHR11588 UniProtKB/TrEMBL
  TUBULIN BETA-2A CHAIN UniProtKB/TrEMBL
  TUBULIN BETA-2A CHAIN UniProtKB/TrEMBL
  TUBULIN BETA-4B CHAIN UniProtKB/TrEMBL
Pfam Tubulin UniProtKB/TrEMBL
  Tubulin_C UniProtKB/TrEMBL
PRINTS BETATUBULIN UniProtKB/TrEMBL
  TUBULIN UniProtKB/TrEMBL
PROSITE TUBULIN UniProtKB/TrEMBL
  TUBULIN_B_AUTOREG UniProtKB/TrEMBL
SMART Tubulin UniProtKB/TrEMBL
  Tubulin_C UniProtKB/TrEMBL
Superfamily-SCOP SSF52490 UniProtKB/TrEMBL
  SSF55307 UniProtKB/TrEMBL
UniProt A0A2R9AXC1_PANPA UniProtKB/TrEMBL
  A0A2R9AXC7 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9B131_PANPA UniProtKB/TrEMBL
  A0A2R9B2G9 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9B3C8_PANPA UniProtKB/TrEMBL