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Gene: STAU1 (staufen double-stranded RNA binding protein 1) Pan paniscus

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Symbol:

STAU1

Name:

staufen double-stranded RNA binding protein 1

RGD ID:

12049594

Description:

ENCODES a protein that exhibits double-stranded RNA binding (ortholog); protein phosphatase 1 binding (ortholog); INVOLVED IN cellular response to oxidative stress (ortholog); dendritic transport of messenger ribonucleoprotein complex (ortholog); intracellular mRNA localization (ortholog); ASSOCIATED WITH atherosclerosis (ortholog); cervical cancer (ortholog); hepatocellular carcinoma (ortholog); FOUND IN neuronal cell body (ortholog); ribonucleoprotein complex (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

double-stranded RNA-binding protein Staufen homolog 1; staufen, RNA binding protein, homolog 1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	21	54,856,184 - 54,930,060 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	20	54,849,291 - 54,923,169 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	20	45,452,639 - 45,526,512 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	20	46,517,772 - 46,581,524 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	20	46,517,772 - 46,578,024 (-)	Ensembl		PanPan1.1 Ensembl	panPan2	panpan1.1

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

atherosclerosis (ISO)

cervical cancer (ISO)

hepatocellular carcinoma (ISO)

melanoma (ISO)

myotonic disease (ISO)

ovarian serous cystadenocarcinoma (ISO)

Thyroid Carcinoma, Nonmedullary 1 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

anterograde dendritic transport of messenger ribonucleoprotein complex (IEA)

cellular response to oxidative stress (ISO)

dendritic transport of messenger ribonucleoprotein complex (ISO)

germ cell development (IEA)

intracellular mRNA localization (IEA,ISO)

positive regulation by virus of viral protein levels in host cell (IEA)

positive regulation of long-term synaptic potentiation (ISO)

positive regulation of viral genome replication (IEA)

protein localization to synapse (IEA)

Cellular Component

cell body (IEA)

cytoplasm (IEA)

cytoplasmic ribonucleoprotein granule (IEA)

cytoplasmic stress granule (IEA)

cytosol (IEA)

dendrite (IEA)

dendrite cytoplasm (IEA)

endoplasmic reticulum (IEA)

neuron projection (IEA)

neuronal cell body (IEA,ISO)

plasma membrane (IEA)

protein-containing complex (IEA)

ribonucleoprotein complex (ISO)

rough endoplasmic reticulum (IEA)

Molecular Function

double-stranded RNA binding (IEA,ISO)

mRNA binding (IEA)

protein phosphatase 1 binding (ISO)

RNA binding (IEA)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

STAU1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	21	54,856,184 - 54,930,060 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	20	54,849,291 - 54,923,169 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	20	45,452,639 - 45,526,512 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	20	46,517,772 - 46,581,524 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	20	46,517,772 - 46,578,024 (-)	Ensembl		PanPan1.1 Ensembl	panPan2	panpan1.1

STAU1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	20	49,113,339 - 49,219,295 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	20	49,113,324 - 49,188,417 (-)	Ensembl		GRCh38.p14 Ensembl	hg38	GRCh38
GRCh37	20	47,729,876 - 47,835,832 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	20	47,163,283 - 47,238,311 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	20	47,163,467 - 47,238,311	NCBI
Celera	20	44,434,510 - 44,509,526 (-)	NCBI		Celera
Cytogenetic Map	20	q13.13	NCBI
HuRef	20	44,479,031 - 44,553,753 (-)	NCBI		HuRef
CHM1_1	20	47,633,937 - 47,708,944 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	20	50,882,825 - 50,988,811 (-)	NCBI		T2T-CHM13v2.0

Stau1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	166,789,469 - 166,838,253 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	166,784,955 - 166,838,295 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	2	166,947,549 - 166,996,315 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	166,947,549 - 166,996,299 (-)	Ensembl		GRCm38.p6 Ensembl	mm10	GRCm38
MGSCv37	2	166,773,641 - 166,821,778 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	2	166,639,478 - 166,687,504 (-)	NCBI		MGSCv36	mm8
Celera	2	172,887,550 - 172,935,664 (-)	NCBI		Celera
Cytogenetic Map	2	H3	NCBI
cM Map	2	87.22	NCBI

Stau1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	176,099,053 - 176,144,947 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	176,099,053 - 176,144,947 (-)	Ensembl				GRCr8
mRatBN7.2	3	155,680,000 - 155,725,969 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	155,680,000 - 155,725,909 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	3	159,481,477 - 159,527,221 (-)	NCBI	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	167,980,447 - 168,026,194 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	165,722,139 - 165,767,900 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd	3	174,178,528 - 174,224,258 (-)	NCBI
Lyon_Normotensive	3	181,039,374 - 181,085,100 (-)	NCBI
Lyon_Hypertensive	3	173,006,278 - 173,052,007 (-)	NCBI
F344_StmMcwi	3	153,902,431 - 153,948,335 (-)	NCBI
Rnor_6.0	3	163,703,204 - 163,748,996 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	163,703,204 - 163,748,996 (-)	Ensembl		Rnor_6.0 Ensembl	rn6	Rnor6.0
Rnor_5.0	3	169,863,711 - 169,909,847 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	158,101,209 - 158,147,105 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	154,261,496 - 154,307,216 (-)	NCBI		Celera
RGSC_v3.1	3	158,007,244 - 158,053,128 (-)	NCBI
Cytogenetic Map	3	q42	NCBI

Stau1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955445	8,971,582 - 9,003,647 (+)	Ensembl		ChiLan1.0 Ensembl
ChiLan1.0	NW_004955445	8,971,585 - 9,003,647 (+)	NCBI	ChiLan1.0	ChiLan1.0

STAU1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	24	35,816,224 - 35,868,791 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	24	35,817,664 - 35,860,021 (-)	Ensembl		CanFam3.1 Ensembl	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	24	35,059,029 - 35,113,351 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	24	36,520,996 - 36,575,325 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	24	36,521,000 - 36,575,346 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	24	35,762,100 - 35,816,354 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	24	35,896,079 - 35,950,349 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	24	36,437,137 - 36,491,471 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Stau1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mIctTri1.hap1	5	194,324,189 - 194,379,719 (+)	NCBI		mIctTri1.hap1
HiC_Itri_2	NW_024408640	189,595,190 - 189,649,850 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936514	5,058,692 - 5,103,528 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936514	5,058,682 - 5,103,493 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

STAU1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	17	50,804,962 - 50,869,223 (-)	Ensembl		Sscrofa11.1 Ensembl	susScr11	Sscrofa11.1
Sscrofa11.1	17	50,804,959 - 50,903,155 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	17	57,265,267 - 57,282,086 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

STAU1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mChlSab1.0.hap1	2	15,010,689 - 15,089,865 (+)	NCBI		mChlSab1.0.hap1
Vero_WHO_p1.0	NW_023666050	63,300,287 - 63,379,235 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0
ChlSab1.1	2	14,804,750 - 14,879,067 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	2	14,804,791 - 14,878,838 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM

Stau1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624790	6,173,160 - 6,229,487 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2
HetGla_female_1.0 Ensembl	NW_004624790	6,172,762 - 6,229,487 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
Naked mole-rat maternal Ensembl	15	12,699,199 - 12,755,064 (+)	Ensembl

Stau1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	5	150,978,325 - 151,024,992 (+)	NCBI	Rrattus_CSIRO_v1	Rrattus_CSIRO_v1

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_008961475	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_024926843	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034947785	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034947786	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034947789	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034947794	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034947795	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_055104859	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_055104860	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063601217	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063601218	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JARIFH020000021	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSPPAT00000040628 ⟹ ENSPPAP00000017907

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	20	46,517,772 - 46,578,024 (-)	Ensembl

Ensembl Acc Id:

ENSPPAT00000040640 ⟹ ENSPPAP00000017919

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	20	46,517,772 - 46,563,064 (-)	Ensembl

Ensembl Acc Id:

ENSPPAT00000040666 ⟹ ENSPPAP00000017945

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	20	46,519,307 - 46,569,346 (-)	Ensembl

Ensembl Acc Id:

ENSPPAT00000040684 ⟹ ENSPPAP00000017963

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	20	46,519,307 - 46,557,836 (-)	Ensembl

RefSeq Acc Id:

XM_008961475 ⟹ XP_008959723

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	21	54,856,184 - 54,901,960 (-)	NCBI
NHGRI_mPanPan1	20	54,849,291 - 54,895,079 (-)	NCBI
Mhudiblu_PPA_v0	20	45,452,639 - 45,498,214 (-)	NCBI
PanPan1.1	20	46,517,772 - 46,563,070 (-)	NCBI

Sequence:

show sequence

CTTTTTCCCCTTCAGCATTTATCCATGAGACAATCACCAAGATGACCCAGGGATTGTACTGCGT
TGTAGGCTTCTGCCATTTGACCTTCCTGCCTGCCAGGGTTTTGAGTTCATGCTGTTGTTTGTAC
TTAAATTAGTAGCCTGGTGGACTGCAGAACATATAATAAAGGAGACCCCTGATGTCCTGATGTG
TGAAGTGTCAAGGGGGTGGAAGCCGTGCACTGAGGGAATCCTAAAAGTAAGACCTACAAGAAAA
ATCAGCTATGAAGAAAGCATAACCCCTACTGTAGAACTAAATGCACTGTGCATGAAACTTGGAA
AAAAACCAATGTATAAGCCTGTTGACCCTTACTCTCGGATGCAGTCCACCTATAACTACAACAT
GAGAGGAGGTGCTTATCCCCCGAGGTACTTTTACCCATTTCCAGTTCCACCTTTACTTTATCAA
GTGGAACTTTCTGTGGGAGGACAGCAATTTAATGGCAAAGGAAAGACAAGACAGGCTGCGAAAC
ACGATGCTGCTGCCAAAGCGTTGAGGATCCTGCAGAATGAGCCCCCGCCGGAGAGGCTGGAGGT
GAATGGAAGAGAATCCGAAGAAGAAAATCTCAATAAATCTGAAATAAGTCAAGTGTTTGAGATT
GCACTTAAACGGAACTTGCCTGTGAATTTCGAGTCTTTCCCTCTGAAACAGGTGGCCCGGGAGA
GTGGCCCACCCCACATGAAGAACTTTGTGACCAAGGTTTCGGTTGGGGAGTTTGTGGGGGAAGG
TGAAGGGAAAAGCAAGAAGATTTCAAAGAAAAATGCCGCCATAGCTGTTCTTGAGGAGCTGAAG
AAGTTACCGCCCCTGCCTGCAGTTGAACGAGTAAAGCCTAGAATCAAAAAGAAAACAAAACCCA
TAGTCAAGCCACAGACAAGCCCAGAATATGGCCAGGGGATCAATCCGATTAGCCGACTGGCCCA
GATCCAGCAGGCAAAAAAGGAGAAGGAGCCAGAGTACACACTCCTCACAGAGCGAGGCCTCCCG
CGCCGCAGGGAGTTTGTGATGCAGGTGAAGGTTGGAAACCACACTGCAGAAGGAACGGGCACCA
ACAAGAAGGTGGCCAAGCGCAATGCAGCCGAGAACATGCTGGAGATCCTTGGTTTCAAAGTCCC
GCAGGCACAGCCCACCAAACCCGCACTCAAGTCAGAGGAGAAGACACCCATAAAGAAACCAGGG
GATGGAAGAAAAGTAACCTTTTTTGAACCTGGCTCTGGGGATGAAAATGGGACTAGTAATAAAG
AGGATGAGTTCAGGATGCCTTATCTAAGTCATCAGCAGCTGCCTGCTGGAATTCTTCCCATGGT
GCCTGAGGTCGCCCAGGCTGTAGGAGTTAGTCAAGGACATCACACCAAAGATTTTACCAGGGCA
GCTCCGAATCCTGCCAAGGCCACGGTAACTGCCATGATAGCCCGAGAGTTGTTGTATGGGGGCA
CCTCGCCCACAGCCGAGACCATTTTAAAGAATAACATCTCTTCAGGCCACGTACCCCATGGACC
TCTCACGAGACCCTCTGAGCAACTGGACTATCTTTCCAGAGTCCAGGGATTCCAGGTTGAATAC
AAAGACTTCCCCAAAAACAACAAGAACGAATTTGTATCTCTTATCAATTGCTCCTCTCAGCCAC
CTCTGATCAGCCATGGTATCGGCAAGGATGTGGAGTCCTGCCATGATATGGCTGCGCTGAACAT
CTTAAAGTTGCTGTCTGAGTTGGACCAACAAAGTACAGAGATGCCAAGAACAGGAAACGGACCA
ATGTCTGTGTGTGGGAGGTGCTGAACCTTTTCTGGCCATGAACCATTATAAAATCCCAACATAT
ATACTGAAAATACTGAAACTGCTTTGAAAATTTGGAATTTCTGATACCTCCAGTGGGCCGAGAG
ACATGGTGGGTAAAGGATGTGGGCAGCAGCAGGGAAGACAACAGAAACACGAGGAGATGGCTGT
GGCCGGGCTGGACTGTGCTGGGGTTTGTTGTGATGGCCACTTGGTGACCTGGCGGTCCCTACGC
AATAGCAGCTGCCTGTGGGGAAGAAGGGCTGCCCAGCCAGCTGGTTCTCCCGGGACACCAGCAG
ATCCACACCCTGGGCACCTCCGTGTTTGGTCTTTTTTTCCCCGTGTGAAAGAAGAAACGGCACG
ACCCCTTCTCAAGCTGGCTCACTCAGACACATTGGGACAAACCCTGGACAGCCATGCCAGAGAG
AGGCCTTTGACCGGCCCCAGAGCTAAAAGCACCAGAGAAAATCAAATGCTTCCTACTCAGCGTG
ACCCAACTTTTCTAGTGTGCTATGGCCCCACCACCTCCTGCAGTACCCACACCATCACCACTGC
TTTCTCTTCCAACAGTGATCTGTATTCTTAGTTTCATTATTTTCTGTTGATTGATATGACACTA
TATAAAATTTTCATTTGAGAATTTCTCAATTGTATCTAGTTATATAGCACAGTTTGGAAACTTG
TCTGAGACTGACTTTATCAATAATCTAACCGACAAAGATCATATCCATGTGTATGTGGTTAGAC
ATTTTTATTTCATTGACTAACCCAGGACAGTTTCAGTGATGCAAATTGTGTGCCCTCTGGTTCA
GCTGAAACAGTCCTGGACTTTCAAAAACCTTGAATAAGTCTCCCACAGTTGTATAAATTGGACA
ATTTAGGAATTTTAAACTTTAGATGATCATTTGGTTCCATTTTTATTTCATTTTTATTTTTGTT
AATGCAAACAGGACTTAAATGAACTTTGATCTCTGTTTTAAAGATTATTAAAAAACATTGTGTA
TCTATACATATGGCTCTTGAGGACTTAGCTTTCACTACACTACAGGATATGATCTCCATGTAGT
CCATATAAACCTGCAGACTGATTTTCCAGAGTGCTCGATACTGTTAATTACATCTCCATTAGGG
CTGAAAAGAATGACCTACGTTTCTCTATACAGCTGTGTTGCTTTTGATGTTGTGTTACTGTACA
CAGAAGTGTGTGCACTGAGGCTCTGCGTGTGGTCCGTATGGAAAGCCTGGTAGCCCTGCGAGTT
AAGTACTGCTTCCATTCATTGTTTACGCTGGAATTTTTCTCCCCATGGAATGTAAGTAAAACTT
AAGTGTTTGTCATCAATAAATGGTAATACTAAATTTTTTGTTAATTTATTCTCAAATGCCACTA
CTGCTAGGTTGGTCCCCTCCCAACTTGCCCCTATCCTTTTTTTATTTTTAAGAAAAAACTTTGT
AATGCTTGTGATTCCATCTGGGCAAAAATCTGAAGATCTGAAATAACTTTATATCAAACCATTG
ATCAATAAACAGCTACTAATGAA

hide sequence

RefSeq Acc Id:

XM_024926843 ⟹ XP_024782611

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	21	54,856,184 - 54,901,927 (-)	NCBI
NHGRI_mPanPan1	20	54,849,291 - 54,895,034 (-)	NCBI
Mhudiblu_PPA_v0	20	45,452,639 - 45,498,381 (-)	NCBI
PanPan1.1	20	46,517,772 - 46,563,070 (-)	NCBI

Sequence:

show sequence

CTTTTTCCCCTTCAGCATTTATCCATGAGACAATCACCAAGATGACCCAGGGATTGTACTGCGT
TGTAGGCTTCTGCCATTTGACCTTCCTGCCTGCCAGGGTTTTGAGTTCATGCTGTTGTTTGTAC
TTAAATTAGTAGCCTGGTGGACTGCAGAACATATAATAAAGGAGACCCCTGATGTCCTGATGTG
TGAAGTGTCAAGGGGGTGGAAGCCGTGCACTGAGGGAATCCTAAAAGTAAGACCTACAAGAAAA
ATCAGCTATGAAGAAAGCATAACCCCTACTGTAGAACTAAATGCACTGTGCATGAAACTTGGAA
AAAAACCAATGTATAAGCCTGTTGACCCTTACTCTCGGATGCAGTCCACCTATAACTACAACAT
GAGAGGAGGTGCTTATCCCCCGAGGTACTTTTACCCATTTCCAGTTCCACCTTTACTTTATCAA
GTGGAACTTTCTGTGGGAGGACAGCAATTTAATGGCAAAGGAAAGACAAGACAGGCTGCGAAAC
ACGATGCTGCTGCCAAAGCGTTGAGGATCCTGCAGAATGAGCCCCCGCCGGAGAGGCTGGAGGT
GAATGGAAGAGAATCCGAAGAAGAAAATCTCAATAAATCTGAAATAAGTCAAGTGTTTGAGATT
GCACTTAAACGGAACTTGCCTGTGAATTTCGAGGTGGCCCGGGAGAGTGGCCCACCCCACATGA
AGAACTTTGTGACCAAGGTTTCGGTTGGGGAGTTTGTGGGGGAAGGTGAAGGGAAAAGCAAGAA
GATTTCAAAGAAAAATGCCGCCATAGCTGTTCTTGAGGAGCTGAAGAAGTTACCGCCCCTGCCT
GCAGTTGAACGAGTAAAGCCTAGAATCAAAAAGAAAACAAAACCCATAGTCAAGCCACAGACAA
GCCCAGAATATGGCCAGGGGATCAATCCGATTAGCCGACTGGCCCAGATCCAGCAGGCAAAAAA
GGAGAAGGAGCCAGAGTACACACTCCTCACAGAGCGAGGCCTCCCGCGCCGCAGGGAGTTTGTG
ATGCAGGTGAAGGTTGGAAACCACACTGCAGAAGGAACGGGCACCAACAAGAAGGTGGCCAAGC
GCAATGCAGCCGAGAACATGCTGGAGATCCTTGGTTTCAAAGTCCCGCAGGCACAGCCCACCAA
ACCCGCACTCAAGTCAGAGGAGAAGACACCCATAAAGAAACCAGGGGATGGAAGAAAAGTAACC
TTTTTTGAACCTGGCTCTGGGGATGAAAATGGGACTAGTAATAAAGAGGATGAGTTCAGGATGC
CTTATCTAAGTCATCAGCAGCTGCCTGCTGGAATTCTTCCCATGGTGCCTGAGGTCGCCCAGGC
TGTAGGAGTTAGTCAAGGACATCACACCAAAGATTTTACCAGGGCAGCTCCGAATCCTGCCAAG
GCCACGGTAACTGCCATGATAGCCCGAGAGTTGTTGTATGGGGGCACCTCGCCCACAGCCGAGA
CCATTTTAAAGAATAACATCTCTTCAGGCCACGTACCCCATGGACCTCTCACGAGACCCTCTGA
GCAACTGGACTATCTTTCCAGAGTCCAGGGATTCCAGGTTGAATACAAAGACTTCCCCAAAAAC
AACAAGAACGAATTTGTATCTCTTATCAATTGCTCCTCTCAGCCACCTCTGATCAGCCATGGTA
TCGGCAAGGATGTGGAGTCCTGCCATGATATGGCTGCGCTGAACATCTTAAAGTTGCTGTCTGA
GTTGGACCAACAAAGTACAGAGATGCCAAGAACAGGAAACGGACCAATGTCTGTGTGTGGGAGG
TGCTGAACCTTTTCTGGCCATGAACCATTATAAAATCCCAACATATATACTGAAAATACTGAAA
CTGCTTTGAAAATTTGGAATTTCTGATACCTCCAGTGGGCCGAGAGACATGGTGGGTAAAGGAT
GTGGGCAGCAGCAGGGAAGACAACAGAAACACGAGGAGATGGCTGTGGCCGGGCTGGACTGTGC
TGGGGTTTGTTGTGATGGCCACTTGGTGACCTGGCGGTCCCTACGCAATAGCAGCTGCCTGTGG
GGAAGAAGGGCTGCCCAGCCAGCTGGTTCTCCCGGGACACCAGCAGATCCACACCCTGGGCACC
TCCGTGTTTGGTCTTTTTTTCCCCGTGTGAAAGAAGAAACGGCACGACCCCTTCTCAAGCTGGC
TCACTCAGACACATTGGGACAAACCCTGGACAGCCATGCCAGAGAGAGGCCTTTGACCGGCCCC
AGAGCTAAAAGCACCAGAGAAAATCAAATGCTTCCTACTCAGCGTGACCCAACTTTTCTAGTGT
GCTATGGCCCCACCACCTCCTGCAGTACCCACACCATCACCACTGCTTTCTCTTCCAACAGTGA
TCTGTATTCTTAGTTTCATTATTTTCTGTTGATTGATATGACACTATATAAAATTTTCATTTGA
GAATTTCTCAATTGTATCTAGTTATATAGCACAGTTTGGAAACTTGTCTGAGACTGACTTTATC
AATAATCTAACCGACAAAGATCATATCCATGTGTATGTGGTTAGACATTTTTATTTCATTGACT
AACCCAGGACAGTTTCAGTGATGCAAATTGTGTGCCCTCTGGTTCAGCTGAAACAGTCCTGGAC
TTTCAAAAACCTTGAATAAGTCTCCCACAGTTGTATAAATTGGACAATTTAGGAATTTTAAACT
TTAGATGATCATTTGGTTCCATTTTTATTTCATTTTTATTTTTGTTAATGCAAACAGGACTTAA
ATGAACTTTGATCTCTGTTTTAAAGATTATTAAAAAACATTGTGTATCTATACATATGGCTCTT
GAGGACTTAGCTTTCACTACACTACAGGATATGATCTCCATGTAGTCCATATAAACCTGCAGAC
TGATTTTCCAGAGTGCTCGATACTGTTAATTACATCTCCATTAGGGCTGAAAAGAATGACCTAC
GTTTCTCTATACAGCTGTGTTGCTTTTGATGTTGTGTTACTGTACACAGAAGTGTGTGCACTGA
GGCTCTGCGTGTGGTCCGTATGGAAAGCCTGGTAGCCCTGCGAGTTAAGTACTGCTTCCATTCA
TTGTTTACGCTGGAATTTTTCTCCCCATGGAATGTAAGTAAAACTTAAGTGTTTGTCATCAATA
AATGGTAATACTAAATTTTTTGTTAATTTATTCTCAAATGCCACTACTGCTAGGTTGGTCCCCT
CCCAACTTGCCCCTATCCTTTTTTTATTTTTAAGAAAAAACTTTGTAATGCTTGTGATTCCATC
TGGGCAAAAATCTGAAGATCTGAAATAACTTTATATCAAACCATTGATCAATAAACAGCTACTA
ATGAA

hide sequence

RefSeq Acc Id:

XM_034947785 ⟹ XP_034803676

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	21	54,856,184 - 54,930,060 (-)	NCBI
NHGRI_mPanPan1	20	54,849,291 - 54,923,166 (-)	NCBI
Mhudiblu_PPA_v0	20	45,452,639 - 45,526,512 (-)	NCBI

RefSeq Acc Id:

XM_034947786 ⟹ XP_034803677

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	21	54,856,184 - 54,930,058 (-)	NCBI
NHGRI_mPanPan1	20	54,849,291 - 54,923,165 (-)	NCBI
Mhudiblu_PPA_v0	20	45,452,639 - 45,526,509 (-)	NCBI

RefSeq Acc Id:

XM_034947794 ⟹ XP_034803685

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	21	54,856,184 - 54,920,516 (-)	NCBI
NHGRI_mPanPan1	20	54,849,291 - 54,913,618 (-)	NCBI
Mhudiblu_PPA_v0	20	45,452,639 - 45,516,982 (-)	NCBI

RefSeq Acc Id:

XM_055104859 ⟹ XP_054960834

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	21	54,856,184 - 54,929,901 (-)	NCBI
NHGRI_mPanPan1	20	54,849,291 - 54,923,169 (-)	NCBI

RefSeq Acc Id:

XM_055104860 ⟹ XP_054960835

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	21	54,856,184 - 54,920,874 (-)	NCBI
NHGRI_mPanPan1	20	54,849,291 - 54,923,169 (-)	NCBI

RefSeq Acc Id:

XM_063601217 ⟹ XP_063457287

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	21	54,856,184 - 54,920,520 (-)	NCBI

RefSeq Acc Id:

XM_063601218 ⟹ XP_063457288

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	21	54,856,184 - 54,920,512 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_008959723	(Get FASTA)	NCBI Sequence Viewer
	XP_024782611	(Get FASTA)	NCBI Sequence Viewer
	XP_034803676	(Get FASTA)	NCBI Sequence Viewer
	XP_034803677	(Get FASTA)	NCBI Sequence Viewer
	XP_034803685	(Get FASTA)	NCBI Sequence Viewer
	XP_054960834	(Get FASTA)	NCBI Sequence Viewer
	XP_054960835	(Get FASTA)	NCBI Sequence Viewer
	XP_063457287	(Get FASTA)	NCBI Sequence Viewer
	XP_063457288	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSPPAP00000017907.1
	ENSPPAP00000017919.1
	ENSPPAP00000017945.1
	ENSPPAP00000017963.1
	ENSPPAP00050010379
	ENSPPAP00050010386
	ENSPPAP00050010389
	ENSPPAP00050010391

RefSeq Acc Id:	XP_008959723 ⟸ XM_008961475
- Peptide Label:	isoform X3
- UniProtKB:	A0A2R9ALF3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLLFVLKLVAWWTAEHIIKETPDVLMCEVSRGWKPCTEGILKVRPTRKISYEESITPTVELNAL CMKLGKKPMYKPVDPYSRMQSTYNYNMRGGAYPPRYFYPFPVPPLLYQVELSVGGQQFNGKGKT RQAAKHDAAAKALRILQNEPPPERLEVNGRESEEENLNKSEISQVFEIALKRNLPVNFESFPLK QVARESGPPHMKNFVTKVSVGEFVGEGEGKSKKISKKNAAIAVLEELKKLPPLPAVERVKPRIK KKTKPIVKPQTSPEYGQGINPISRLAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKVGNHTA EGTGTNKKVAKRNAAENMLEILGFKVPQAQPTKPALKSEEKTPIKKPGDGRKVTFFEPGSGDEN GTSNKEDEFRMPYLSHQQLPAGILPMVPEVAQAVGVSQGHHTKDFTRAAPNPAKATVTAMIARE LLYGGTSPTAETILKNNISSGHVPHGPLTRPSEQLDYLSRVQGFQVEYKDFPKNNKNEFVSLIN CSSQPPLISHGIGKDVESCHDMAALNILKLLSELDQQSTEMPRTGNGPMSVCGRC hide sequence

RefSeq Acc Id:	XP_024782611 ⟸ XM_024926843
- Peptide Label:	isoform X4
- UniProtKB:	A0A2R9ALF3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLLFVLKLVAWWTAEHIIKETPDVLMCEVSRGWKPCTEGILKVRPTRKISYEESITPTVELNAL CMKLGKKPMYKPVDPYSRMQSTYNYNMRGGAYPPRYFYPFPVPPLLYQVELSVGGQQFNGKGKT RQAAKHDAAAKALRILQNEPPPERLEVNGRESEEENLNKSEISQVFEIALKRNLPVNFEVARES GPPHMKNFVTKVSVGEFVGEGEGKSKKISKKNAAIAVLEELKKLPPLPAVERVKPRIKKKTKPI VKPQTSPEYGQGINPISRLAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKVGNHTAEGTGTN KKVAKRNAAENMLEILGFKVPQAQPTKPALKSEEKTPIKKPGDGRKVTFFEPGSGDENGTSNKE DEFRMPYLSHQQLPAGILPMVPEVAQAVGVSQGHHTKDFTRAAPNPAKATVTAMIARELLYGGT SPTAETILKNNISSGHVPHGPLTRPSEQLDYLSRVQGFQVEYKDFPKNNKNEFVSLINCSSQPP LISHGIGKDVESCHDMAALNILKLLSELDQQSTEMPRTGNGPMSVCGRC hide sequence

RefSeq Acc Id:	XP_034803676 ⟸ XM_034947785
- Peptide Label:	isoform X5
- UniProtKB:	A0A2R9AKK5 (UniProtKB/TrEMBL), A0A2R9ALF3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_034803677 ⟸ XM_034947786
- Peptide Label:	isoform X6
- UniProtKB:	A0A2R9ALF3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_034803685 ⟸ XM_034947794
- Peptide Label:	isoform X5
- UniProtKB:	A0A2R9AKK5 (UniProtKB/TrEMBL), A0A2R9ALF3 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSPPAP00000017907 ⟸ ENSPPAT00000040628

Ensembl Acc Id:

ENSPPAP00000017963 ⟸ ENSPPAT00000040684

Ensembl Acc Id:

ENSPPAP00000017919 ⟸ ENSPPAT00000040640

Ensembl Acc Id:

ENSPPAP00000017945 ⟸ ENSPPAT00000040666

RefSeq Acc Id:	XP_054960834 ⟸ XM_055104859
- Peptide Label:	isoform X1
- UniProtKB:	A0A2R9AQC0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_054960835 ⟸ XM_055104860
- Peptide Label:	isoform X1
- UniProtKB:	A0A2R9AQC0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063457287 ⟸ XM_063601217
- Peptide Label:	isoform X2
- UniProtKB:	A0A2R9AQC0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063457288 ⟸ XM_063601218
- Peptide Label:	isoform X6
- UniProtKB:	A0A2R9ALF3 (UniProtKB/TrEMBL)

Protein Domains

DRBM

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSPPAG00000032023	Ensembl, UniProtKB/TrEMBL
	ENSPPAG00050007963	ENTREZGENE
Ensembl Transcript	ENSPPAT00000040628.1	UniProtKB/TrEMBL
	ENSPPAT00000040640.1	UniProtKB/TrEMBL
	ENSPPAT00000040666.1	UniProtKB/TrEMBL
	ENSPPAT00000040684.1	UniProtKB/TrEMBL
	ENSPPAT00050016952	ENTREZGENE
	ENSPPAT00050016959	ENTREZGENE
	ENSPPAT00050016962	ENTREZGENE
	ENSPPAT00050016964	ENTREZGENE
Gene3D-CATH	3.30.160.20	UniProtKB/TrEMBL
	6.10.250.1360	UniProtKB/TrEMBL
InterPro	DRBM-containing_protein	UniProtKB/TrEMBL
	dsRBD_dom	UniProtKB/TrEMBL
	STAU1_DSRM_3	UniProtKB/TrEMBL
	Staufen_C	UniProtKB/TrEMBL
NCBI Gene	STAU1	ENTREZGENE
PANTHER	DOUBLE-STRANDED RNA-BINDING PROTEIN STAUFEN HOMOLOG 1	UniProtKB/TrEMBL
	MATERNAL EFFECT PROTEIN STAUFEN	UniProtKB/TrEMBL
Pfam	dsrm	UniProtKB/TrEMBL
	Staufen_C	UniProtKB/TrEMBL
PROSITE	DS_RBD	UniProtKB/TrEMBL
SMART	DSRM	UniProtKB/TrEMBL
Superfamily-SCOP	dsRNA-binding domain-like	UniProtKB/TrEMBL
UniProt	A0A2R9AKK5	ENTREZGENE, UniProtKB/TrEMBL
	A0A2R9ALF3	ENTREZGENE, UniProtKB/TrEMBL
	A0A2R9AQC0	ENTREZGENE, UniProtKB/TrEMBL
	A0A2R9ASR7_PANPA	UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD