ZFR (zinc finger RNA binding protein) - Rat Genome Database

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Gene: ZFR (zinc finger RNA binding protein) Pan paniscus
Analyze
Symbol: ZFR
Name: zinc finger RNA binding protein
RGD ID: 11730982
Description: ENCODES a protein that exhibits double-stranded RNA binding (inferred); nucleic acid binding (inferred); single-stranded RNA binding (inferred); ASSOCIATED WITH hereditary spastic paraplegia (ortholog); intellectual disability (ortholog); Neoplasm Invasiveness (ortholog); FOUND IN cytoplasm (inferred); nucleus (inferred); precatalytic spliceosome (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2477,859,596 - 77,950,206 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1576,013,404 - 76,103,836 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0577,890,015 - 77,980,332 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1583,295,837 - 83,363,027 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl583,295,040 - 83,361,615 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
ZFR
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2477,859,596 - 77,950,206 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1576,013,404 - 76,103,836 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0577,890,015 - 77,980,332 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1583,295,837 - 83,363,027 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl583,295,040 - 83,361,615 (+)Ensemblpanpan1.1panPan2
ZFR
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38532,354,350 - 32,444,740 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl532,354,350 - 32,444,740 (-)EnsemblGRCh38hg38GRCh38
GRCh37532,354,456 - 32,444,846 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36532,390,213 - 32,480,601 (-)NCBINCBI36Build 36hg18NCBI36
Build 34532,390,213 - 32,480,601NCBI
Celera532,236,180 - 32,326,535 (-)NCBICelera
Cytogenetic Map5p13.3NCBI
HuRef532,321,365 - 32,411,643 (-)NCBIHuRef
CHM1_1532,356,348 - 32,446,993 (-)NCBICHM1_1
T2T-CHM13v2.0532,468,061 - 32,558,413 (-)NCBIT2T-CHM13v2.0
Zfr
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391512,117,649 - 12,185,535 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1512,117,917 - 12,185,769 (+)EnsemblGRCm39 Ensembl
GRCm381512,117,563 - 12,185,449 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1512,117,831 - 12,185,683 (+)EnsemblGRCm38mm10GRCm38
MGSCv371512,047,606 - 12,115,204 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361512,062,578 - 12,129,188 (+)NCBIMGSCv36mm8
Celera1511,897,447 - 11,964,826 (+)NCBICelera
Cytogenetic Map15A1NCBI
cM Map155.9NCBI
Zfr
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8262,864,333 - 62,927,377 (+)NCBIGRCr8
mRatBN7.2261,137,611 - 61,200,322 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl261,137,611 - 61,200,322 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx268,273,575 - 68,336,149 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0266,387,272 - 66,449,689 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0261,388,614 - 61,451,145 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0262,150,251 - 62,213,048 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl262,150,251 - 62,213,048 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0282,476,651 - 82,539,546 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4261,578,795 - 61,641,287 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1261,507,932 - 61,568,205 (+)NCBI
Celera257,494,326 - 57,556,779 (-)NCBICelera
Cytogenetic Map2q16NCBI
Zfr
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542618,198,932 - 18,255,774 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542618,198,932 - 18,257,340 (-)NCBIChiLan1.0ChiLan1.0
ZFR
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1475,038,248 - 75,124,154 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl474,982,467 - 75,123,053 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha474,674,790 - 74,761,869 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0475,558,006 - 75,645,130 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl475,558,026 - 75,645,130 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1475,295,219 - 75,382,247 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0475,424,065 - 75,511,076 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0475,954,509 - 76,041,579 (+)NCBIUU_Cfam_GSD_1.0
Zfr
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213222,929,561 - 223,004,478 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365188,367,479 - 8,440,851 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365188,367,396 - 8,442,271 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZFR
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1618,560,280 - 18,656,294 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11618,561,909 - 18,656,341 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
ZFR
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1431,635,430 - 31,723,164 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl431,636,851 - 31,723,078 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607121,862,839 - 21,950,811 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Zfr
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475922,135,358 - 22,207,442 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475922,135,431 - 22,207,283 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSPPAT00000031093   ⟹   ENSPPAP00000008457
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl583,295,040 - 83,361,615 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000031095   ⟹   ENSPPAP00000008459
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl583,297,226 - 83,361,615 (+)Ensembl
RefSeq Acc Id: XM_034960212   ⟹   XP_034816103
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2477,859,596 - 77,950,206 (+)NCBI
NHGRI_mPanPan1576,013,404 - 76,103,836 (+)NCBI
Mhudiblu_PPA_v0577,890,015 - 77,980,332 (+)NCBI
RefSeq Acc Id: XR_008625396
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2477,859,596 - 77,940,289 (+)NCBI
NHGRI_mPanPan1576,013,418 - 76,093,922 (+)NCBI
Protein Sequences
Protein RefSeqs XP_034816103 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000008457.1
  ENSPPAP00000008459.1
RefSeq Acc Id: XP_034816103   ⟸   XM_034960212
- UniProtKB: A0A2R8ZU13 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSPPAP00000008459   ⟸   ENSPPAT00000031095
Ensembl Acc Id: ENSPPAP00000008457   ⟸   ENSPPAT00000031093
Protein Domains
DZF


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000027447 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000031093.1 UniProtKB/TrEMBL
  ENSPPAT00000031095.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.1410.40 UniProtKB/TrEMBL
  3.30.460.10 UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/TrEMBL
InterPro DZF_dom UniProtKB/TrEMBL
  DZF_dom_C UniProtKB/TrEMBL
  DZF_dom_N UniProtKB/TrEMBL
  Matrin/U1-like-C_Znf_C2H2 UniProtKB/TrEMBL
  NT_sf UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
NCBI Gene ZFR ENTREZGENE
PANTHER ZINC FINGER RNA-BINDING PROTEIN UniProtKB/TrEMBL
  ZINC FINGER RNA-BINDING PROTEIN UniProtKB/TrEMBL
Pfam DZF UniProtKB/TrEMBL
  DZF_C UniProtKB/TrEMBL
  zf-met UniProtKB/TrEMBL
PROSITE DZF UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
SMART DZF UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/TrEMBL
  ZnF_U1 UniProtKB/TrEMBL
Superfamily-SCOP SSF57667 UniProtKB/TrEMBL
UniProt A0A2R8ZU13 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R8ZXE5_PANPA UniProtKB/TrEMBL