.
GABAergic neuron differentiation - Ontology Report - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

ONTOLOGY REPORT - ANNOTATIONS

Term:GABAergic neuron differentiation
go back to main search page
Accession:GO:0097154 term browser browse the term
Definition:The process in which a neuroblast acquires the specialized structural and functional features of a GABAergic neuron.

 Loading Annotations... 
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
X

show annotations for term's descendants           Sort by:
GABAergic neuron differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ascl1 achaete-scute family bHLH transcription factor 1 acts_upstream_of_or_within ISO
IEA 		MGI:3040955 (PMID:15071116)
GO_REF:0000107 		RGD
Ensembl		 PMID:15071116 GO_REF:0000107 NCBI chr 7:21,903,136...21,906,003
Ensembl chr 7:21,903,126...21,905,993 		JBrowse link
G Bhlhe22 basic helix-loop-helix family, member e22 acts_upstream_of_or_within ISO MGI:3707409 (PMID:17092954) RGD PMID:17092954 NCBI chr 2:100,486,400...100,489,510
Ensembl chr 2:100,486,400...100,489,510 		JBrowse link
G Dlx1 distal-less homeobox 1 acts_upstream_of_or_within ISO
IEA 		MGI:94902 (PMID:11163262)
GO_REF:0000107 		RGD
Ensembl		 PMID:11163262 GO_REF:0000107 NCBI chr 3:56,356,190...56,360,780
Ensembl chr 3:56,356,190...56,360,780 		JBrowse link
G Dlx2 distal-less homeobox 2 acts_upstream_of_or_within ISO
IEA 		MGI:94901 (PMID:11163262)
GO_REF:0000107 		RGD
Ensembl		 PMID:11163262 GO_REF:0000107 NCBI chr 3:56,370,238...56,373,581
Ensembl chr 3:56,370,483...56,373,597 		JBrowse link
G Fezf2 Fez family zinc finger 2 acts_upstream_of ISO
IEA 		(PMID:24997765)
GO_REF:0000107 		RGD
Ensembl		 PMID:24997765 GO_REF:0000107 NCBI chr15:12,768,614...12,777,554
Ensembl chr15:12,773,762...12,777,554 		JBrowse link
G Gata2 GATA binding protein 2 acts_upstream_of_or_within ISO
IEA 		MGI:4818492 (PMID:22991444)
GO_REF:0000107 		RGD
Ensembl		 PMID:22991444 GO_REF:0000107 NCBI chr 4:120,654,205...120,667,763
Ensembl chr 4:120,658,986...120,667,761 		JBrowse link
G Gsx2 GS homeobox 2 acts_upstream_of_or_within ISO
IEA 		MGI:2150162 (PMID:11060228)
GO_REF:0000107 		RGD
Ensembl		 PMID:11060228 GO_REF:0000107 NCBI chr14:33,123,799...33,126,151
Ensembl chr14:33,124,381...33,126,105 		JBrowse link
G Helt helt bHLH transcription factor acts_upstream_of_or_within ISO
IEA 		MGI:96919 (PMID:15071116)
GO_REF:0000107 		RGD
Ensembl		 PMID:15071116 GO_REF:0000107 NCBI chr16:45,991,227...45,993,045
Ensembl chr16:45,991,227...45,992,960 		JBrowse link
G Inhba inhibin subunit beta A involved_in ISO
IEA 		(PMID:25804741)
GO_REF:0000107 		RGD
Ensembl		 PMID:25804741 GO_REF:0000107 NCBI chr17:49,091,635...49,111,573
Ensembl chr17:49,095,920...49,108,982 		JBrowse link
G Nkx2-1 NK2 homeobox 1 acts_upstream_of_or_within ISO
IEA 		MGI:1857494 (PMID:11163262)
GO_REF:0000107 		RGD
Ensembl		 PMID:11163262 GO_REF:0000107 NCBI chr 6:73,996,601...74,001,483
Ensembl chr 6:73,996,601...73,999,791 		JBrowse link
G Prdm13 PR/SET domain 13 involved_in ISO (PMID:34730112) RGD PMID:34730112 NCBI chr 5:35,220,815...35,232,866
Ensembl chr 5:35,225,435...35,232,881 		JBrowse link
G Sall1 spalt-like transcription factor 1 acts_upstream_of ISO MGI:2388379 (PMID:18024993) RGD PMID:18024993 NCBI chr19:18,005,782...18,022,705
Ensembl chr19:18,007,503...18,022,705 		JBrowse link
G Tlx3 T-cell leukemia, homeobox 3 acts_upstream_of ISO
IEA 		MGI:104867 (PMID:16234809)
GO_REF:0000107 		RGD
Ensembl		 PMID:16234809 GO_REF:0000107 NCBI chr10:17,789,706...17,792,207
Ensembl chr10:17,790,053...17,792,207 		JBrowse link
G Ulk4 unc-51 like kinase 4 acts_upstream_of_or_within ISO MGI:4362969 (PMID:29391390) RGD PMID:29391390 NCBI chr 8:120,670,879...120,966,026
Ensembl chr 8:120,670,866...120,966,924 		JBrowse link
cerebral cortex GABAergic interneuron development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chrna2 cholinergic receptor nicotinic alpha 2 subunit part_of IEP RGD PMID:17046198 RGD:152995358 NCBI chr15:40,342,317...40,358,601
Ensembl chr15:40,342,317...40,358,601 		JBrowse link
G Rac1 Rac family small GTPase 1 acts_upstream_of_or_within ISO MGI:2180784 (PMID:23258346) RGD PMID:23258346 NCBI chr12:11,037,028...11,057,251
Ensembl chr12:11,036,698...11,057,251 		JBrowse link
G Rac3 Rac family small GTPase 3 acts_upstream_of_or_within ISO
IEA 		MGI:97845 (PMID:23258346)
GO_REF:0000107 		RGD
Ensembl		 PMID:23258346 GO_REF:0000107 NCBI chr10:106,002,808...106,005,243
Ensembl chr10:105,993,087...106,005,260 		JBrowse link
cerebral cortex GABAergic interneuron differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ascl1 achaete-scute family bHLH transcription factor 1 involved_in ISO
IEA 		(PMID:12050665)
GO_REF:0000107 		RGD
Ensembl		 PMID:12050665 GO_REF:0000107 NCBI chr 7:21,903,136...21,906,003
Ensembl chr 7:21,903,126...21,905,993 		JBrowse link
G Dlx1 distal-less homeobox 1 acts_upstream_of_or_within ISO
IEA 		MGI:94902 (PMID:15028753)
GO_REF:0000107 		RGD
Ensembl		 PMID:15028753 GO_REF:0000107 NCBI chr 3:56,356,190...56,360,780
Ensembl chr 3:56,356,190...56,360,780 		JBrowse link
G Dlx2 distal-less homeobox 2 acts_upstream_of_or_within ISO
IEA 		MGI:94901 (PMID:15028753)
GO_REF:0000107 		RGD
Ensembl		 PMID:15028753 GO_REF:0000107 NCBI chr 3:56,370,238...56,373,581
Ensembl chr 3:56,370,483...56,373,597 		JBrowse link
G Nkx2-1 NK2 homeobox 1 acts_upstream_of_or_within ISO
IEA 		MGI:1857494|MGI:3653645 (PMID:15028753), (PMID:18786356)
GO_REF:0000107 		RGD
Ensembl		 PMID:15028753 PMID:18786356 GO_REF:0000107 NCBI chr 6:73,996,601...74,001,483
Ensembl chr 6:73,996,601...73,999,791 		JBrowse link
cerebral cortex GABAergic interneuron fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dlx1 distal-less homeobox 1 acts_upstream_of_or_within ISO
IEA 		MGI:94902 (PMID:17678855)
GO_REF:0000107 		RGD
Ensembl		 PMID:17678855 GO_REF:0000107 NCBI chr 3:56,356,190...56,360,780
Ensembl chr 3:56,356,190...56,360,780 		JBrowse link
G Dlx2 distal-less homeobox 2 acts_upstream_of_or_within ISO
IEA 		MGI:94901 (PMID:17678855)
GO_REF:0000107 		RGD
Ensembl		 PMID:17678855 GO_REF:0000107 NCBI chr 3:56,370,238...56,373,581
Ensembl chr 3:56,370,483...56,373,597 		JBrowse link
cerebral cortex GABAergic interneuron migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arx aristaless related homeobox acts_upstream_of_or_within ISO
IEA 		MGI:2679972 (PMID:17460091)
GO_REF:0000107 		RGD
Ensembl		 PMID:17460091 GO_REF:0000107 NCBI chr  X:58,016,233...58,028,149
Ensembl chr  X:58,016,233...58,028,142 		JBrowse link
G Cntn2 contactin 2 acts_upstream_of_or_within ISO
IEA 		(PMID:11714688)
GO_REF:0000107 		RGD
Ensembl		 PMID:11714688 GO_REF:0000107 NCBI chr13:43,942,868...43,975,973
Ensembl chr13:43,947,265...43,975,887 		JBrowse link
G Drd1 dopamine receptor D1 acts_upstream_of_or_within ISO
IEA 		MGI:1857875 (PMID:17409246)
GO_REF:0000107 		RGD
Ensembl		 PMID:17409246 GO_REF:0000107 NCBI chr17:10,540,440...10,544,971
Ensembl chr17:10,540,558...10,545,002 		JBrowse link
G Drd2 dopamine receptor D2 acts_upstream_of_or_within ISO
IEA 		MGI:1857875 (PMID:17409246)
GO_REF:0000107 		RGD
Ensembl		 PMID:17409246 GO_REF:0000107 NCBI chr 8:49,708,927...49,772,876
Ensembl chr 8:49,708,927...49,772,875 		JBrowse link
G Fezf2 Fez family zinc finger 2 acts_upstream_of_or_within ISO
IEA 		MGI:3046867 (PMID:21338885)
GO_REF:0000107 		RGD
Ensembl		 PMID:21338885 GO_REF:0000107 NCBI chr15:12,768,614...12,777,554
Ensembl chr15:12,773,762...12,777,554 		JBrowse link
G Lhx6 LIM homeobox 6 acts_upstream_of_or_within ISO MGI:3702518 (PMID:17376969) RGD PMID:17376969 NCBI chr 3:19,432,439...19,456,268
Ensembl chr 3:19,433,494...19,456,061 		JBrowse link
GABAergic neuron differentiation in basal ganglia term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Helt helt bHLH transcription factor acts_upstream_of_or_within ISO
IEA 		MGI:3703237 (PMID:16968817)
GO_REF:0000107 		RGD
Ensembl		 PMID:16968817 GO_REF:0000107 NCBI chr16:45,991,227...45,993,045
Ensembl chr16:45,991,227...45,992,960 		JBrowse link
striatal medium spiny neuron differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcl11b BCL11 transcription factor B acts_upstream_of_or_within ISO
IEA 		MGI:2663971 (PMID:18199763)
GO_REF:0000107 		RGD
Ensembl		 PMID:18199763 GO_REF:0000107 NCBI chr 6:126,834,531...126,927,720
Ensembl chr 6:126,834,531...126,928,224 		JBrowse link
G Inhba inhibin subunit beta A involved_in ISO
IEA 		(PMID:25804741)
GO_REF:0000107 		RGD
Ensembl		 PMID:25804741 GO_REF:0000107 NCBI chr17:49,091,635...49,111,573
Ensembl chr17:49,095,920...49,108,982 		JBrowse link
G Shank3 SH3 and multiple ankyrin repeat domains 3 involved_in IEA
ISO
ISS 		GO_REF:0000107
(PMID:21423165)
GO_REF:0000024 		Ensembl
RGD
BHF-UCL		 PMID:21423165 GO_REF:0000024 GO_REF:0000107 NCBI chr 7:120,568,707...120,630,796
Ensembl chr 7:120,570,402...120,630,374 		JBrowse link
G Zswim6 zinc finger, SWIM-type containing 6 involved_in ISO (PMID:28433741) RGD PMID:28433741 NCBI chr 2:39,211,131...39,378,877
Ensembl chr 2:39,212,949...39,378,924 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20543
    cellular process 19534
      cellular developmental process 4838
        cell differentiation 4837
          neuron differentiation 1741
            GABAergic neuron differentiation 25
              GABAergic neuron differentiation in basal ganglia 1
              Lugaro cell differentiation 0
              cerebellar Golgi cell differentiation 0
              cerebral cortex GABAergic interneuron differentiation + 13
              striatal medium spiny neuron differentiation 4
Path 2
Term Annotations click to browse term
  biological_process 20543
    developmental process 7160
      anatomical structure development 6656
        multicellular organism development 5362
          system development 4644
            nervous system development 2881
              neurogenesis 2127
                generation of neurons 1821
                  neuron differentiation 1741
                    GABAergic neuron differentiation 25
                      GABAergic neuron differentiation in basal ganglia 1
                      Lugaro cell differentiation 0
                      cerebellar Golgi cell differentiation 0
                      cerebral cortex GABAergic interneuron differentiation + 13
                      striatal medium spiny neuron differentiation 4
paths to the root