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regulation of podosome assembly - Ontology Report - Rat Genome Database

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ONTOLOGY REPORT - ANNOTATIONS

Term:regulation of podosome assembly
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Accession:GO:0071801 term browser browse the term
Definition:Any process that modulates the frequency, rate or extent of podosome assembly.
Comment:Note that the assembly is regulated by several small GTPases of the Rab and Rho families.

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regulation of podosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gsn gelsolin involved_in ISO
IEA 		(PMID:24236012)
GO_REF:0000107 		RGD
Ensembl		 PMID:24236012 GO_REF:0000107 NCBI chr 3:18,585,166...18,638,404
Ensembl chr 3:18,585,172...18,638,402 		JBrowse link
G Hck HCK proto-oncogene, Src family tyrosine kinase involved_in ISO
ISS 		(PMID:15998323)
GO_REF:0000024 		RGD
UniProt		 PMID:15998323 GO_REF:0000024 NCBI chr 3:141,571,587...141,614,696
Ensembl chr 3:141,571,587...141,614,693 		JBrowse link
G Kif9 kinesin family member 9 involved_in ISO
IEA 		(PMID:21119006)
GO_REF:0000107 		RGD
Ensembl		 PMID:21119006 GO_REF:0000107 NCBI chr 8:110,459,467...110,504,492
Ensembl chr 8:110,459,383...110,505,252 		JBrowse link
negative regulation of podosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arhgef2 Rho/Rac guanine nucleotide exchange factor 2 acts_upstream_of_or_within ISO (PMID:21352810) RGD PMID:21352810 NCBI chr 2:174,061,126...174,118,355
Ensembl chr 2:174,062,976...174,118,355 		JBrowse link
positive regulation of podosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arhgef5 Rho guanine nucleotide exchange factor 5 acts_upstream_of_or_within ISO
IEA 		MGI:1096342|MGI:98397 (PMID:21525037)
GO_REF:0000107 		RGD
Ensembl		 PMID:21525037 GO_REF:0000107 NCBI chr 4:72,087,205...72,112,316
Ensembl chr 4:72,087,247...72,111,254 		JBrowse link
G Arpc2 actin related protein 2/3 complex, subunit 2 IMP RGD PMID:17224451 RGD:2306207 NCBI chr 9:75,820,782...75,851,471
Ensembl chr 9:75,820,770...75,851,471 		JBrowse link
G Capg capping actin protein, gelsolin like NOT|involved_in ISO (PMID:24236012) RGD PMID:24236012 NCBI chr 4:104,594,743...104,611,856
Ensembl chr 4:104,594,753...104,611,856 		JBrowse link
G Csf2 colony stimulating factor 2 involved_in ISO
IEA 		(PMID:15220135)
GO_REF:0000107 		RGD
Ensembl		 PMID:15220135 GO_REF:0000107 NCBI chr10:38,386,945...38,388,926
Ensembl chr10:38,386,945...38,389,199 		JBrowse link
G Fscn1 fascin actin-bundling protein 1 involved_in ISS
ISO
IEA 		GO_REF:0000024
(PMID:20137952)
GO_REF:0000107 		UniProt
RGD
Ensembl		 PMID:20137952 GO_REF:0000024 GO_REF:0000107 NCBI chr12:11,597,042...11,610,183
Ensembl chr12:11,597,048...11,610,211 		JBrowse link
G Il5 interleukin 5 involved_in ISO
IEA 		(PMID:15220135)
GO_REF:0000107 		RGD
Ensembl		 PMID:15220135 GO_REF:0000107 NCBI chr10:37,874,342...37,877,213
Ensembl chr10:37,874,342...37,877,213 		JBrowse link
G Lcp1 lymphocyte cytosolic protein 1 involved_in ISO
IEA 		(PMID:24236012)
GO_REF:0000107 		RGD
Ensembl		 PMID:24236012 GO_REF:0000107 NCBI chr15:56,846,375...56,954,090
Ensembl chr15:50,488,149...50,544,680 		JBrowse link
G Mapk8 mitogen-activated protein kinase 8 acts_upstream_of_or_within ISO (PMID:24127566) RGD PMID:24127566 NCBI chr16:8,638,897...8,721,960
Ensembl chr16:8,638,924...8,721,981 		JBrowse link
G Mapk9 mitogen-activated protein kinase 9 acts_upstream_of_or_within ISO
IEA 		(PMID:24127566)
GO_REF:0000107 		RGD
Ensembl		 PMID:24127566 GO_REF:0000107 NCBI chr10:34,169,661...34,211,138
Ensembl chr10:34,169,675...34,210,178 		JBrowse link
G Msn moesin acts_upstream_of_or_within ISO
IEA 		(PMID:24127566)
GO_REF:0000107 		RGD
Ensembl		 PMID:24127566 GO_REF:0000107 NCBI chr  X:60,996,043...61,064,011
Ensembl chr  X:60,995,951...61,065,628 		JBrowse link
G Palld palladin, cytoskeletal associated protein IMP RGD PMID:16868024 RGD:2325783 NCBI chr16:28,228,006...28,621,349
Ensembl chr16:27,981,354...28,621,337 		JBrowse link
G Rhoa ras homolog family member A acts_upstream_of_or_within ISO MGI:1858952|MGI:98397 (PMID:21525037) RGD PMID:21525037 NCBI chr 8:117,870,548...117,904,303
Ensembl chr 8:108,991,954...109,025,746 		JBrowse link
G Src SRC proto-oncogene, non-receptor tyrosine kinase acts_upstream_of_or_within ISO MGI:1096342|MGI:1858952 (PMID:21525037), (PMID:24127566) RGD PMID:21525037 PMID:24127566 NCBI chr 3:166,511,616...166,559,463
Ensembl chr 3:146,091,841...146,139,476 		JBrowse link
G Tnf tumor necrosis factor involved_in ISO
IEA 		(PMID:15220135)
GO_REF:0000107 		RGD
Ensembl		 PMID:15220135 GO_REF:0000107 NCBI chr20:3,626,685...3,629,303
Ensembl chr20:3,622,011...3,624,629 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20543
    cellular process 19534
      regulation of cellular process 13032
        regulation of cellular component biogenesis 1154
          regulation of organelle assembly 274
            regulation of podosome assembly 18
              negative regulation of podosome assembly 1
              positive regulation of podosome assembly 14
Path 2
Term Annotations click to browse term
  biological_process 20543
    cellular process 19534
      cellular component organization or biogenesis 7114
        cellular component biogenesis 3560
          cellular component assembly 3215
            organelle assembly 1115
              membraneless organelle assembly 467
                podosome assembly 28
                  regulation of podosome assembly 18
                    negative regulation of podosome assembly 1
                    positive regulation of podosome assembly 14
paths to the root