Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   

ONTOLOGY REPORT - ANNOTATIONS


Term:podosome assembly
go back to main search page
Accession:GO:0071800 term browser browse the term
Definition:The aggregation, arrangement and bonding together of a set of components to form a podosome, an actin-rich adhesion structure characterized by formation upon cell substrate contact and localization at the substrate-attached part of the cell.


show annotations for term's descendants           Sort by:
 
podosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Asb2 ankyrin repeat and SOCS box-containing 2 involved_in ISO (MGI:5510317|PMID:23632887) RGD PMID:23632887 MGI:5510317 NCBI chr 6:127,212,325...127,248,451
Ensembl chr 6:127,212,273...127,248,372
JBrowse link
G Bin2 bridging integrator 2 involved_in ISO
IBA
ISS
(PMID:23285027)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:23285027, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 7:142,273,832...142,304,731
Ensembl chr 7:142,273,833...142,300,382
JBrowse link
G Dbnl drebrin-like involved_in ISS
ISO
GO_REF:0000024
(MGI:5487508|PMID:22303001)
UniProt
RGD
PMID:22303001 GO_REF:0000024 MGI:5487508 NCBI chr14:86,029,335...86,044,364
Ensembl chr14:86,029,335...86,044,364
JBrowse link
G Farp2 FERM, ARH/RhoGEF and pleckstrin domain protein 2 involved_in ISO (MGI:4844210|PMID:20702777) RGD PMID:20702777 MGI:4844210 NCBI chr 9:100,660,366...100,767,940
Ensembl chr 9:100,660,394...100,767,940
JBrowse link
G Sh3pxd2b SH3 and PX domains 2B involved_in ISO (MGI:4943661|PMID:19144821) RGD PMID:19144821 MGI:4943661 NCBI chr10:17,209,152...17,296,449
Ensembl chr10:17,209,212...17,291,876
JBrowse link
negative regulation of podosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arhgef2 Rho/Rac guanine nucleotide exchange factor 2 acts_upstream_of_or_within ISO (MGI:5002438|PMID:21352810) RGD PMID:21352810 MGI:5002438 NCBI chr 2:187,964,100...188,022,847
Ensembl chr 2:187,977,008...188,021,377
JBrowse link
positive regulation of podosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arhgef5 Rho guanine nucleotide exchange factor 5 acts_upstream_of_or_within ISO MGI:1096342|MGI:98397 (MGI:5317222|PMID:21525037) RGD PMID:21525037 MGI:5317222 NCBI chr 4:72,710,775...72,736,415
Ensembl chr 4:72,718,458...72,735,007
JBrowse link
G Arpc2 actin related protein 2/3 complex, subunit 2 IMP RGD PMID:17224451 RGD:2306207 NCBI chr 9:81,518,163...81,548,871
Ensembl chr 9:81,518,176...81,548,871
JBrowse link
G Asap1 ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
(MGI:3768569|PMID:17893324)
RGD PMID:17893324, PMID:21873635 MGI:3768569, RGD:13792537 NCBI chr 7:104,670,076...104,951,090
Ensembl chr 7:104,669,672...104,801,045
JBrowse link
G Capg capping actin protein, gelsolin like NOT|involved_in ISO (PMID:24236012) RGD PMID:24236012 NCBI chr 4:100,395,693...100,419,447
Ensembl chr 4:100,407,658...100,419,446
JBrowse link
G Csf2 colony stimulating factor 2 involved_in ISO (PMID:15220135) RGD PMID:15220135 NCBI chr10:39,602,089...39,604,070
Ensembl chr10:39,602,089...39,604,070
JBrowse link
G Fscn1 fascin actin-bundling protein 1 involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:20137952)
UniProt
Ensembl
RGD
PMID:20137952 GO_REF:0000024 GO_REF:0000107 NCBI chr12:13,655,459...13,668,595
Ensembl chr12:13,656,554...13,668,515
JBrowse link
G Il5 interleukin 5 involved_in ISO (PMID:15220135) RGD PMID:15220135 NCBI chr10:39,066,716...39,069,587
Ensembl chr10:39,066,716...39,069,587
JBrowse link
G Lcp1 lymphocyte cytosolic protein 1 involved_in ISO (PMID:24236012) RGD PMID:24236012 NCBI chr15:57,170,566...57,277,811
Ensembl chr15:57,221,292...57,277,811
JBrowse link
G Mapk8 mitogen-activated protein kinase 8 acts_upstream_of_or_within ISO (MGI:5576866|PMID:24127566) RGD PMID:24127566 MGI:5576866 NCBI chr16:9,620,854...9,709,342
Ensembl chr16:9,625,177...9,709,347
JBrowse link
G Mapk9 mitogen-activated protein kinase 9 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(MGI:5576866|PMID:24127566)
Ensembl
RGD
PMID:24127566 GO_REF:0000107 MGI:5576866 NCBI chr10:35,333,859...35,374,364
Ensembl chr10:35,333,859...35,374,355
JBrowse link
G Msn moesin involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(MGI:5576866|PMID:24127566)
Ensembl
RGD
PMID:24127566 GO_REF:0000107 MGI:5576866 NCBI chr  X:65,226,834...65,294,192
Ensembl chr  X:65,226,748...65,295,810
JBrowse link
G Palld palladin, cytoskeletal associated protein IMP RGD PMID:16868024 RGD:2325783 NCBI chr16:31,865,712...31,948,168 JBrowse link
G Rhoa ras homolog family member A acts_upstream_of_or_within ISO MGI:1858952|MGI:98397 (MGI:5317222|PMID:21525037) RGD PMID:21525037 MGI:5317222 NCBI chr 8:117,082,440...117,116,244
Ensembl chr 8:117,106,576...117,116,167
JBrowse link
G Src SRC proto-oncogene, non-receptor tyrosine kinase acts_upstream_of_or_within ISO MGI:1096342|MGI:1858952 (MGI:5317222|PMID:21525037), (MGI:5576866|PMID:24127566) RGD PMID:21525037 PMID:24127566 MGI:5317222 MGI:5576866 NCBI chr 3:153,547,807...153,595,643
Ensembl chr 3:153,580,861...153,595,642
JBrowse link
G Tnf tumor necrosis factor involved_in ISO (PMID:15220135) RGD PMID:15220135 NCBI chr20:5,189,382...5,192,000
Ensembl chr20:5,189,390...5,192,000
Ensembl chr20:5,189,390...5,192,000
JBrowse link
regulation of podosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gsn gelsolin involved_in ISO (PMID:24236012) RGD PMID:24236012 NCBI chr 3:14,456,106...14,508,922
Ensembl chr 3:14,467,330...14,508,911
JBrowse link
G Hck HCK proto-oncogene, Src family tyrosine kinase involved_in ISO
ISS
(PMID:15998323)
GO_REF:0000024
RGD
UniProt
PMID:15998323 GO_REF:0000024 NCBI chr 3:148,579,917...148,623,026
Ensembl chr 3:148,579,920...148,623,033
JBrowse link
G Kif9 kinesin family member 9 involved_in ISO (PMID:21119006) RGD PMID:21119006 NCBI chr 8:118,737,739...118,795,190
Ensembl chr 8:118,744,229...118,794,992
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19491
    cellular process 18344
      cellular component organization or biogenesis 6721
        cellular component organization 6481
          cellular component assembly 2996
            protein-containing complex assembly 1596
              podosome assembly 24
                negative regulation of podosome assembly 1
                positive regulation of podosome assembly 15
                regulation of podosome assembly + 19
paths to the root