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ONTOLOGY REPORT - ANNOTATIONS

Term:podosome assembly
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Accession:GO:0071800 term browser browse the term
Definition:The aggregation, arrangement and bonding together of a set of components to form a podosome, an actin-rich adhesion structure characterized by formation upon cell substrate contact and localization at the substrate-attached part of the cell.


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podosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Asb2 ankyrin repeat and SOCS box-containing 2 involved_in ISO (PMID:23632887) RGD PMID:23632887 NCBI chr 6:122,474,754...122,511,014
Ensembl chr 6:122,474,756...122,510,854 		JBrowse link
G Bin2 bridging integrator 2 involved_in ISO
IBA
IEA
ISS		 (PMID:23285027)
GO_REF:0000033
GO_REF:0000107
GO_REF:0000024		 RGD
GO_Central
Ensembl
UniProt		 PMID:23285027 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 7:131,742,001...131,768,208
Ensembl chr 7:131,742,002...131,786,285 		JBrowse link
G Cela1 chymotrypsin like elastase 1 involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 7:131,773,161...131,786,300
Ensembl chr 7:131,742,002...131,786,285 		JBrowse link
G Dbnl drebrin-like involved_in ISS
ISO		 GO_REF:0000024
(PMID:22303001)		 UniProt
RGD		 PMID:22303001 GO_REF:0000024 NCBI chr14:80,666,115...80,681,155
Ensembl chr14:80,666,124...80,681,155 		JBrowse link
G Diaph3 diaphanous-related formin 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
(PMID:15976449)		 Ensembl
RGD		 PMID:15976449 GO_REF:0000107 NCBI chr15:62,543,375...63,013,060
Ensembl chr15:62,543,375...63,012,975 		JBrowse link
G Dock5 dedicator of cytokinesis 5 acts_upstream_of_or_within ISO (PMID:27505886) RGD PMID:27505886 NCBI chr15:41,979,728...42,158,733
Ensembl chr15:41,979,729...42,158,649 		JBrowse link
G Farp2 FERM, ARH/RhoGEF and pleckstrin domain protein 2 involved_in ISO (PMID:20702777) RGD PMID:20702777 NCBI chr 9:94,053,650...94,161,982
Ensembl chr 9:94,053,726...94,162,212 		JBrowse link
G Rho rhodopsin involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
(PMID:15976449)		 Ensembl
RGD		 PMID:15976449 GO_REF:0000107 NCBI chr 4:148,975,597...148,988,693
Ensembl chr 4:148,980,611...148,985,773 		JBrowse link
G Sh3pxd2b SH3 and PX domains 2B involved_in ISO (PMID:19144821) RGD PMID:19144821 NCBI chr10:16,918,611...17,027,499
Ensembl chr10:16,918,679...17,005,170 		JBrowse link
G Tns3 tensin 3 acts_upstream_of_or_within ISO (PMID:27505886) RGD PMID:27505886 NCBI chr14:83,173,649...83,405,671
Ensembl chr14:83,173,649...83,405,998 		JBrowse link
negative regulation of podosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arhgef2 Rho/Rac guanine nucleotide exchange factor 2 acts_upstream_of_or_within ISO (PMID:21352810) RGD PMID:21352810 NCBI chr 2:174,061,126...174,118,355
Ensembl chr 2:174,062,976...174,118,355 		JBrowse link
positive regulation of podosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arhgef5 Rho guanine nucleotide exchange factor 5 acts_upstream_of_or_within ISO MGI:1096342|MGI:98397 (PMID:21525037) RGD PMID:21525037 NCBI chr 4:72,087,205...72,112,316
Ensembl chr 4:72,087,247...72,111,254 		JBrowse link
G Arpc2 actin related protein 2/3 complex, subunit 2 IMP RGD PMID:17224451 RGD:2306207 NCBI chr 9:75,820,782...75,851,471
Ensembl chr 9:75,820,770...75,851,471 		JBrowse link
G Capg capping actin protein, gelsolin like NOT|involved_in ISO (PMID:24236012) RGD PMID:24236012 NCBI chr 4:104,594,743...104,611,856
Ensembl chr 4:104,594,753...104,611,856 		JBrowse link
G Csf2 colony stimulating factor 2 involved_in ISO (PMID:15220135) RGD PMID:15220135 NCBI chr10:38,386,945...38,388,926
Ensembl chr10:38,386,945...38,389,199 		JBrowse link
G Fscn1 fascin actin-bundling protein 1 involved_in ISS
ISO
IEA		 GO_REF:0000024
(PMID:20137952)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:20137952 GO_REF:0000024 GO_REF:0000107 NCBI chr12:11,597,042...11,610,183
Ensembl chr12:11,597,048...11,610,211 		JBrowse link
G Il5 interleukin 5 involved_in ISO (PMID:15220135) RGD PMID:15220135 NCBI chr10:37,874,342...37,877,213
Ensembl chr10:37,874,342...37,877,213 		JBrowse link
G Lcp1 lymphocyte cytosolic protein 1 involved_in ISO (PMID:24236012) RGD PMID:24236012 NCBI chr15:50,443,300...50,544,682
Ensembl chr15:50,488,149...50,544,680 		JBrowse link
G Mapk8 mitogen-activated protein kinase 8 acts_upstream_of_or_within ISO (PMID:24127566) RGD PMID:24127566 NCBI chr16:8,638,897...8,721,960
Ensembl chr16:8,638,924...8,721,981 		JBrowse link
G Mapk9 mitogen-activated protein kinase 9 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
(PMID:24127566)		 Ensembl
RGD		 PMID:24127566 GO_REF:0000107 NCBI chr10:34,169,661...34,211,138
Ensembl chr10:34,169,675...34,210,178 		JBrowse link
G Msn moesin involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
(PMID:24127566)		 Ensembl
RGD		 PMID:24127566 GO_REF:0000107 NCBI chr  X:60,996,043...61,064,011
Ensembl chr  X:60,995,951...61,065,628 		JBrowse link
G Palld palladin, cytoskeletal associated protein IMP RGD PMID:16868024 RGD:2325783 NCBI chr16:28,228,006...28,621,349
Ensembl chr16:27,981,354...28,621,337 		JBrowse link
G Rhoa ras homolog family member A acts_upstream_of_or_within ISO MGI:1858952|MGI:98397 (PMID:21525037) RGD PMID:21525037 NCBI chr 8:108,991,926...109,025,746
Ensembl chr 8:108,991,954...109,025,746 		JBrowse link
G Src SRC proto-oncogene, non-receptor tyrosine kinase acts_upstream_of_or_within ISO MGI:1096342|MGI:1858952 (PMID:21525037), (PMID:24127566) RGD PMID:21525037 PMID:24127566 NCBI chr 3:146,091,969...146,139,492
Ensembl chr 3:146,091,841...146,139,476 		JBrowse link
G Tnf tumor necrosis factor involved_in ISO (PMID:15220135) RGD PMID:15220135 NCBI chr20:3,622,011...3,624,629
Ensembl chr20:3,622,011...3,624,629 		JBrowse link
regulation of podosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gsn gelsolin involved_in ISO
IEA		 (PMID:24236012)
GO_REF:0000107		 RGD
Ensembl		 PMID:24236012 GO_REF:0000107 NCBI chr 3:18,585,166...18,638,404
Ensembl chr 3:18,585,172...18,638,402 		JBrowse link
G Hck HCK proto-oncogene, Src family tyrosine kinase involved_in ISO
ISS
IEA		 (PMID:15998323)
GO_REF:0000024
GO_REF:0000107		 RGD
UniProt
Ensembl		 PMID:15998323 GO_REF:0000024 GO_REF:0000107 NCBI chr 3:141,571,587...141,614,696
Ensembl chr 3:141,571,587...141,614,693 		JBrowse link
G Kif9 kinesin family member 9 involved_in ISO (PMID:21119006) RGD PMID:21119006 NCBI chr 8:110,459,467...110,504,492
Ensembl chr 8:110,459,383...110,505,252 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20536
    cellular process 19526
      cellular component organization or biogenesis 7187
        cellular component organization 6903
          cellular component assembly 3197
            protein-containing complex assembly 1601
              podosome assembly 28
                negative regulation of podosome assembly 1
                positive regulation of podosome assembly 14
                regulation of podosome assembly + 18
Path 2
Term Annotations click to browse term
  biological_process 20536
    cellular process 19526
      cellular component organization or biogenesis 7187
        cellular component organization 6903
          cellular component assembly 3197
            organelle assembly 1108
              membraneless organelle assembly 465
                podosome assembly 28
                  negative regulation of podosome assembly 1
                  positive regulation of podosome assembly 14
                  regulation of podosome assembly + 18
paths to the root