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Gene: Lcp1 (lymphocyte cytosolic protein 1) Rattus norvegicus

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Symbol:

Lcp1

Name:

lymphocyte cytosolic protein 1

RGD ID:

1308288

Description:

Predicted to enable GTPase binding activity; actin filament binding activity; and integrin binding activity. Involved in animal organ regeneration. Predicted to be located in several cellular components, including actin cytoskeleton; focal adhesion; and ruffle. Predicted to be active in actin filament; actin filament bundle; and cytoplasm. Human ortholog(s) of this gene implicated in nicotine dependence. Orthologous to human LCP1 (lymphocyte cytosolic protein 1); INTERACTS WITH 1-naphthyl isothiocyanate; 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-diaminodiphenylmethane.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC306071; plastin-2

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	LCP1 (lymphocyte cytosolic protein 1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Lcp1 (lymphocyte cytosolic protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Lcp1 (lymphocyte cytosolic protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	LCP1 (lymphocyte cytosolic protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	LCP1 (lymphocyte cytosolic protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Lcp1 (lymphocyte cytosolic protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	LCP1 (lymphocyte cytosolic protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	LCP1 (lymphocyte cytosolic protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Lcp1 (lymphocyte cytosolic protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	PLS3 (plastin 3)	HGNC	OrthoDB
Alliance orthologs ³
Homo sapiens (human):	LCP1 (lymphocyte cytosolic protein 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Lcp1 (lymphocyte cytosolic protein 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	lcp1 (lymphocyte cytosolic protein 1 (L-plastin))	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Fim	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	SAC6	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	plst-1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	lcp1	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)

Candidate Gene For:

Bmd62

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	15	56,846,375 - 56,954,090 (+)	NCBI		GRCr8
mRatBN7.2	15	50,443,300 - 50,544,682 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	15	50,488,149 - 50,544,680 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	15	54,630,232 - 54,686,870 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	15	55,748,540 - 55,805,188 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	15	52,580,535 - 52,637,056 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	15	57,170,566 - 57,277,811 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	15	57,221,292 - 57,277,811 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	15	60,888,052 - 60,988,851 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	15	56,034,457 - 56,091,880 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	15	56,050,236 - 56,107,660 (+)	NCBI
Celera	15	50,120,119 - 50,176,635 (+)	NCBI		Celera
Cytogenetic Map	15	q11	NCBI

JBrowse:

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Model

Annotation Click to see Annotation Detail View

RGD Manual Disease Annotations Click to see Annotation Detail View

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Lcp1	Rat	Acute Otitis Media		ISO	RGD:8892287	9068941	mRNA, protein:increased expression:mucosa of middle ear	RGD	PMID:26711468\|REF_RGD_ID:11553828
Lcp1	Rat	nicotine dependence	susceptibility	ISO	RGD:1317977	401851917	DNA:SNP:: (rs1886040) (human)	RGD

Imported Disease Annotations - ClinVar

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Lcp1	Rat	hereditary breast ovarian cancer syndrome		ISO	RGD:1317977	8554872	ClinVar Annotator: match by term: Hereditary breast ovarian cancer syndrome	ClinVar	PMID:25741868

Imported Disease Annotations - CTD

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Lcp1	Rat	Experimental Liver Cirrhosis		ISO	RGD:1317977	11554173	CTD Direct Evidence: marker/mechanism	CTD	PMID:25380136
Lcp1	Rat	nicotine dependence		ISO	RGD:1317977	11554173	CTD Direct Evidence: marker/mechanism	CTD	PMID:18438686

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Lcp1	Rat	(S)-nicotine	affects response to substance	ISO	RGD:1317977	6480464	LCP1 gene SNP affects the susceptibility to Nicotine	CTD	PMID:18438686
Lcp1	Rat	1,2-dimethylhydrazine	increases expression	ISO	RGD:1317978	6480464	1,2-Dimethylhydrazine results in increased expression of LCP1 mRNA	CTD	PMID:22206623
Lcp1	Rat	1-naphthyl isothiocyanate	increases expression	EXP		6480464	1-Naphthylisothiocyanate results in increased expression of LCP1 mRNA	CTD	PMID:25380136
Lcp1	Rat	17beta-estradiol	multiple interactions	ISO	RGD:1317977	6480464	[Estradiol co-treated with TGFB1 protein] results in increased expression of LCP1 mRNA	CTD	PMID:30165855
Lcp1	Rat	17beta-estradiol	increases expression	ISO	RGD:1317977	6480464	Estradiol results in increased expression of LCP1 mRNA	CTD	PMID:31614463
Lcp1	Rat	17beta-hydroxy-5alpha-androstan-3-one	multiple interactions	ISO	RGD:1317977	6480464	AR protein affects the reaction [Dihydrotestosterone results in increased expression of LCP1 mRNA]	CTD	PMID:27473015
Lcp1	Rat	17beta-hydroxy-5alpha-androstan-3-one	increases expression	ISO	RGD:1317977	6480464	Dihydrotestosterone results in increased expression of LCP1 mRNA	CTD	PMID:27473015\|PMID:29556062\|PMID:29581250
Lcp1	Rat	2,3,7,8-tetrachlorodibenzodioxine	affects expression	ISO	RGD:1317977	6480464	Tetrachlorodibenzodioxin affects the expression of LCP1 mRNA	CTD	PMID:22298810
Lcp1	Rat	2,3,7,8-tetrachlorodibenzodioxine	increases expression	EXP		6480464	Tetrachlorodibenzodioxin results in increased expression of LCP1 mRNA	CTD	PMID:33387578
Lcp1	Rat	2,3,7,8-tetrachlorodibenzodioxine	affects expression	EXP		6480464	Tetrachlorodibenzodioxin affects the expression of LCP1 mRNA	CTD	PMID:34747641
Lcp1	Rat	2,4,6-trinitrobenzenesulfonic acid	increases expression	ISO	RGD:1317978	6480464	Trinitrobenzenesulfonic Acid results in increased expression of LCP1 mRNA	CTD	PMID:18200517
Lcp1	Rat	2,4,6-trinitrobenzenesulfonic acid	multiple interactions	ISO	RGD:1317978	6480464	Curcumin inhibits the reaction [Trinitrobenzenesulfonic Acid results in increased expression of LCP1 mRNA]	CTD	PMID:18200517
Lcp1	Rat	2-palmitoylglycerol	increases expression	ISO	RGD:1317977	6480464	2-palmitoylglycerol results in increased expression of LCP1 mRNA	CTD	PMID:37199045
Lcp1	Rat	4,4'-diaminodiphenylmethane	increases expression	EXP		6480464	4,4'-diaminodiphenylmethane results in increased expression of LCP1 mRNA	CTD	PMID:25380136
Lcp1	Rat	4,4'-sulfonyldiphenol	increases expression	ISO	RGD:1317978	6480464	bisphenol S results in increased expression of LCP1 mRNA	CTD	PMID:30951980
Lcp1	Rat	4,4'-sulfonyldiphenol	decreases expression	ISO	RGD:1317978	6480464	bisphenol S results in decreased expression of LCP1 mRNA	CTD	PMID:39298647
Lcp1	Rat	acetamide	increases expression	EXP		6480464	acetamide results in increased expression of LCP1 mRNA	CTD	PMID:31881176
Lcp1	Rat	aflatoxin B1	decreases expression	ISO	RGD:1317978	6480464	Aflatoxin B1 results in decreased expression of LCP1 mRNA	CTD	PMID:19770486
Lcp1	Rat	all-trans-retinoic acid	increases expression	ISO	RGD:1317977	6480464	Tretinoin results in increased expression of LCP1 mRNA	CTD	PMID:33167477
Lcp1	Rat	alpha-Zearalanol	increases expression	EXP		6480464	Zeranol results in increased expression of LCP1 mRNA	CTD	PMID:35163327
Lcp1	Rat	aniline	increases nitrosation	EXP		6480464	aniline results in increased nitrosation of LCP1 protein	CTD	PMID:21708182
Lcp1	Rat	antirheumatic drug	decreases expression	ISO	RGD:1317977	6480464	Antirheumatic Agents results in decreased expression of LCP1 mRNA	CTD	PMID:24449571
Lcp1	Rat	Aroclor 1254	decreases expression	ISO	RGD:1317978	6480464	Chlorodiphenyl (54% Chlorine) results in decreased expression of LCP1 mRNA	CTD	PMID:23650126
Lcp1	Rat	arsane	affects methylation	ISO	RGD:1317977	6480464	Arsenic affects the methylation of LCP1 gene	CTD	PMID:25304211
Lcp1	Rat	arsenic atom	affects methylation	ISO	RGD:1317977	6480464	Arsenic affects the methylation of LCP1 gene	CTD	PMID:25304211
Lcp1	Rat	arsenous acid	increases expression	ISO	RGD:1317977	6480464	Arsenic Trioxide results in increased expression of LCP1 mRNA	CTD	PMID:22521957
Lcp1	Rat	arsenous acid	decreases expression	ISO	RGD:1317977	6480464	Arsenic Trioxide results in decreased expression of LCP1 protein	CTD	PMID:25419056
Lcp1	Rat	bathocuproine disulfonic acid	multiple interactions	ISO	RGD:1317977	6480464	[bathocuproine sulfonate co-treated with pyrrolidine dithiocarbamic acid] inhibits the reaction [[Tetradecanoylphorbol Acetate co-treated with Ionomycin] more ...	CTD	PMID:15477007
Lcp1	Rat	benzo[a]pyrene	increases mutagenesis	ISO	RGD:1317977	6480464	Benzo(a)pyrene results in increased mutagenesis of LCP1 gene	CTD	PMID:25435355
Lcp1	Rat	benzo[a]pyrene	decreases expression	ISO	RGD:1317977	6480464	Benzo(a)pyrene results in decreased expression of LCP1 mRNA	CTD	PMID:32234424
Lcp1	Rat	benzo[a]pyrene	affects methylation	ISO	RGD:1317977	6480464	Benzo(a)pyrene affects the methylation of LCP1 5' UTR; Benzo(a)pyrene affects the methylation of LCP1 promoter	CTD	PMID:27901495
Lcp1	Rat	benzo[a]pyrene	increases expression	ISO	RGD:1317978	6480464	Benzo(a)pyrene results in increased expression of LCP1 mRNA	CTD	PMID:22228805
Lcp1	Rat	benzo[a]pyrene	decreases expression	ISO	RGD:1317978	6480464	Benzo(a)pyrene results in decreased expression of LCP1 mRNA	CTD	PMID:21569818
Lcp1	Rat	bis(2-chloroethyl) sulfide	increases expression	ISO	RGD:1317977	6480464	Mustard Gas results in increased expression of LCP1 mRNA	CTD	PMID:25102026
Lcp1	Rat	bis(2-ethylhexyl) phthalate	increases expression	ISO	RGD:1317977	6480464	Diethylhexyl Phthalate results in increased expression of LCP1 mRNA	CTD	PMID:31163220
Lcp1	Rat	bisphenol A	increases expression	EXP		6480464	bisphenol A results in increased expression of LCP1 mRNA	CTD	PMID:25181051
Lcp1	Rat	bisphenol A	increases expression	ISO	RGD:1317978	6480464	bisphenol A results in increased expression of LCP1 mRNA	CTD	PMID:38701888
Lcp1	Rat	bisphenol A	decreases methylation	ISO	RGD:1317977	6480464	bisphenol A results in decreased methylation of LCP1 gene	CTD	PMID:31601247
Lcp1	Rat	bisphenol A	increases methylation	EXP		6480464	bisphenol A results in increased methylation of LCP1 gene	CTD	PMID:28505145
Lcp1	Rat	bisphenol F	increases expression	ISO	RGD:1317978	6480464	bisphenol F results in increased expression of LCP1 mRNA	CTD	PMID:30951980
Lcp1	Rat	bleomycin A2	increases expression	ISO	RGD:1317978	6480464	Bleomycin results in increased expression of LCP1 mRNA	CTD	PMID:30825431
Lcp1	Rat	bleomycin A2	multiple interactions	ISO	RGD:1317978	6480464	Cannabidiol analog inhibits the reaction [Bleomycin results in increased expression of LCP1 mRNA]; lenabasum inhibits more ...	CTD	PMID:30825431
Lcp1	Rat	buspirone	decreases expression	EXP		6480464	Buspirone results in decreased expression of LCP1 mRNA	CTD	PMID:24136188
Lcp1	Rat	cadmium dichloride	increases expression	EXP		6480464	Cadmium Chloride results in increased expression of LCP1 mRNA	CTD	PMID:25993096
Lcp1	Rat	cadmium dichloride	increases expression	ISO	RGD:1317977	6480464	Cadmium Chloride results in increased expression of LCP1 mRNA	CTD	PMID:38568856
Lcp1	Rat	calyculin A	multiple interactions	ISO	RGD:1317977	6480464	KT 5926 inhibits the reaction [calyculin A results in increased phosphorylation of LCP1 protein]	CTD	PMID:14769871
Lcp1	Rat	calyculin A	increases phosphorylation	ISO	RGD:1317977	6480464	calyculin A results in increased phosphorylation of LCP1 protein	CTD	PMID:14769871
Lcp1	Rat	cannabidiol	multiple interactions	ISO	RGD:1317978	6480464	Cannabidiol analog inhibits the reaction [Bleomycin results in increased expression of LCP1 mRNA]	CTD	PMID:30825431
Lcp1	Rat	cantharidin	decreases expression	ISO	RGD:1317978	6480464	Cantharidin results in decreased expression of LCP1 mRNA	CTD	PMID:36907384
Lcp1	Rat	carbamazepine	affects expression	ISO	RGD:1317977	6480464	Carbamazepine affects the expression of LCP1 mRNA	CTD	PMID:25979313
Lcp1	Rat	carbon nanotube	increases expression	ISO	RGD:1317978	6480464	Nanotubes, Carbon analog results in increased expression of LCP1 mRNA	CTD	PMID:25554681
Lcp1	Rat	carbon nanotube	decreases expression	ISO	RGD:1317978	6480464	Nanotubes, Carbon results in decreased expression of LCP1 mRNA	CTD	PMID:25554681\|PMID:25620056
Lcp1	Rat	chlorpyrifos	increases expression	ISO	RGD:1317978	6480464	Chlorpyrifos results in increased expression of LCP1 mRNA	CTD	PMID:32715474
Lcp1	Rat	ciguatoxin CTX1B	affects expression	ISO	RGD:1317978	6480464	Ciguatoxins affects the expression of LCP1 mRNA	CTD	PMID:18353800
Lcp1	Rat	cisplatin	decreases expression	EXP		6480464	Cisplatin results in decreased expression of LCP1 mRNA	CTD	PMID:22023808
Lcp1	Rat	clofibrate	decreases expression	ISO	RGD:1317978	6480464	Clofibrate results in decreased expression of LCP1 mRNA	CTD	PMID:17585979
Lcp1	Rat	Cuprizon	increases expression	EXP		6480464	Cuprizone results in increased expression of LCP1 mRNA	CTD	PMID:27523638
Lcp1	Rat	curcumin	multiple interactions	ISO	RGD:1317978	6480464	Curcumin inhibits the reaction [Trinitrobenzenesulfonic Acid results in increased expression of LCP1 mRNA]	CTD	PMID:18200517
Lcp1	Rat	cyclosporin A	decreases expression	ISO	RGD:1317978	6480464	Cyclosporine results in decreased expression of LCP1 mRNA	CTD	PMID:19770486
Lcp1	Rat	cyclosporin A	increases expression	ISO	RGD:1317977	6480464	Cyclosporine results in increased expression of LCP1 mRNA	CTD	PMID:25562108\|PMID:27989131
Lcp1	Rat	deoxynivalenol	increases phosphorylation	ISO	RGD:1317978	6480464	deoxynivalenol results in increased phosphorylation of LCP1 protein	CTD	PMID:23352502
Lcp1	Rat	deoxynivalenol	affects phosphorylation	ISO	RGD:1317978	6480464	deoxynivalenol affects the phosphorylation of LCP1 protein	CTD	PMID:23811945
Lcp1	Rat	diarsenic trioxide	increases expression	ISO	RGD:1317977	6480464	Arsenic Trioxide results in increased expression of LCP1 mRNA	CTD	PMID:22521957
Lcp1	Rat	diarsenic trioxide	decreases expression	ISO	RGD:1317977	6480464	Arsenic Trioxide results in decreased expression of LCP1 protein	CTD	PMID:25419056
Lcp1	Rat	dibutyl phthalate	increases expression	EXP		6480464	Dibutyl Phthalate results in increased expression of LCP1 mRNA	CTD	PMID:21266533
Lcp1	Rat	dimethylarsinic acid	multiple interactions	ISO	RGD:1317978	6480464	[sodium arsenate co-treated with sodium arsenite co-treated with monomethylarsonic acid co-treated with Cacodylic Acid] results more ...	CTD	PMID:34876320
Lcp1	Rat	dimethylarsinous acid	increases expression	ISO	RGD:1317977	6480464	dimethylarsinous acid results in increased expression of LCP1 mRNA	CTD	PMID:23876855
Lcp1	Rat	diuron	decreases expression	ISO	RGD:1317977	6480464	Diuron results in decreased expression of LCP1 mRNA	CTD	PMID:35967413
Lcp1	Rat	dorsomorphin	multiple interactions	ISO	RGD:1317977	6480464	[NOG protein co-treated with Phenylmercuric Acetate co-treated with dorsomorphin co-treated with 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in increased more ...	CTD	PMID:27188386
Lcp1	Rat	endosulfan	increases expression	EXP		6480464	Endosulfan results in increased expression of LCP1 mRNA	CTD	PMID:29391264
Lcp1	Rat	enzalutamide	decreases expression	ISO	RGD:1317977	6480464	enzalutamide results in decreased expression of LCP1 mRNA	CTD	PMID:29581250
Lcp1	Rat	enzalutamide	multiple interactions	ISO	RGD:1317977	6480464	KDM1A protein promotes the reaction [enzalutamide results in decreased expression of LCP1 mRNA]	CTD	PMID:29581250
Lcp1	Rat	ethanol	affects expression	ISO	RGD:1317978	6480464	Ethanol affects the expression of LCP1 mRNA	CTD	PMID:30319688
Lcp1	Rat	ethanol	increases expression	ISO	RGD:1317978	6480464	Ethanol results in increased expression of LCP1 mRNA	CTD	PMID:30319688
Lcp1	Rat	flutamide	decreases expression	EXP		6480464	Flutamide results in decreased expression of LCP1 mRNA	CTD	PMID:24136188
Lcp1	Rat	folic acid	decreases expression	ISO	RGD:1317978	6480464	Folic Acid results in decreased expression of LCP1 mRNA	CTD	PMID:25629700
Lcp1	Rat	gentamycin	increases expression	EXP		6480464	Gentamicins results in increased expression of LCP1 mRNA	CTD	PMID:22061828\|PMID:33387578
Lcp1	Rat	hydroxyflutamide	decreases expression	ISO	RGD:1317977	6480464	hydroxyflutamide results in decreased expression of LCP1 mRNA	CTD	PMID:29556062
Lcp1	Rat	indoles	decreases expression	EXP		6480464	Indoles results in decreased expression of LCP1 mRNA	CTD	PMID:20521778
Lcp1	Rat	indoles	increases expression	EXP		6480464	Indoles results in increased expression of LCP1 mRNA	CTD	PMID:20521778
Lcp1	Rat	ionomycin	multiple interactions	ISO	RGD:1317977	6480464	[bathocuproine sulfonate co-treated with pyrrolidine dithiocarbamic acid] inhibits the reaction [[Tetradecanoylphorbol Acetate co-treated with Ionomycin] more ...	CTD	PMID:15477007
Lcp1	Rat	KT 5926	multiple interactions	ISO	RGD:1317977	6480464	KT 5926 inhibits the reaction [calyculin A results in increased phosphorylation of LCP1 protein]; KT more ...	CTD	PMID:14769871
Lcp1	Rat	lead diacetate	increases expression	ISO	RGD:1317978	6480464	lead acetate results in increased expression of LCP1 mRNA	CTD	PMID:20542052
Lcp1	Rat	lidocaine	increases expression	EXP		6480464	Lidocaine results in increased expression of LCP1 mRNA	CTD	PMID:35283115
Lcp1	Rat	lithium chloride	increases expression	ISO	RGD:1317977	6480464	Lithium Chloride results in increased expression of LCP1 mRNA	CTD	PMID:23527032
Lcp1	Rat	methylarsonic acid	multiple interactions	ISO	RGD:1317978	6480464	[sodium arsenate co-treated with sodium arsenite co-treated with monomethylarsonic acid co-treated with Cacodylic Acid] results more ...	CTD	PMID:34876320
Lcp1	Rat	mono(2-ethylhexyl) phthalate	increases expression	ISO	RGD:1317977	6480464	mono-(2-ethylhexyl)phthalate results in increased expression of LCP1 mRNA	CTD	PMID:36695872
Lcp1	Rat	N-methyl-4-phenylpyridinium	decreases expression	ISO	RGD:1317977	6480464	1-Methyl-4-phenylpyridinium results in decreased expression of LCP1 protein	CTD	PMID:24806433
Lcp1	Rat	N-nitrosodimethylamine	increases expression	EXP		6480464	Dimethylnitrosamine results in increased expression of LCP1 mRNA	CTD	PMID:25380136
Lcp1	Rat	nickel atom	increases expression	ISO	RGD:1317977	6480464	Nickel results in increased expression of LCP1 mRNA	CTD	PMID:24768652\|PMID:25583101
Lcp1	Rat	nicotine	affects response to substance	ISO	RGD:1317977	6480464	LCP1 gene SNP affects the susceptibility to Nicotine	CTD	PMID:18438686
Lcp1	Rat	nimesulide	decreases expression	EXP		6480464	nimesulide results in decreased expression of LCP1 mRNA	CTD	PMID:24136188
Lcp1	Rat	okadaic acid	decreases expression	ISO	RGD:1317977	6480464	Okadaic Acid results in decreased expression of LCP1 mRNA	CTD	PMID:38832940
Lcp1	Rat	oxycodone	decreases expression	EXP		6480464	Oxycodone results in decreased expression of LCP1 mRNA	CTD	PMID:23439660
Lcp1	Rat	paracetamol	decreases expression	ISO	RGD:1317977	6480464	Acetaminophen results in decreased expression of LCP1 mRNA	CTD	PMID:22230336\|PMID:29067470
Lcp1	Rat	paracetamol	increases expression	EXP		6480464	Acetaminophen results in increased expression of LCP1 mRNA	CTD	PMID:33387578
Lcp1	Rat	paracetamol	increases expression	ISO	RGD:1317977	6480464	Acetaminophen results in increased expression of LCP1 mRNA	CTD	PMID:26690555
Lcp1	Rat	phenylmercury acetate	increases expression	ISO	RGD:1317977	6480464	Phenylmercuric Acetate results in increased expression of LCP1 mRNA	CTD	PMID:26272509
Lcp1	Rat	phenylmercury acetate	multiple interactions	ISO	RGD:1317977	6480464	[NOG protein co-treated with Phenylmercuric Acetate co-treated with dorsomorphin co-treated with 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in increased more ...	CTD	PMID:27188386
Lcp1	Rat	phorbol 13-acetate 12-myristate	multiple interactions	ISO	RGD:1317977	6480464	[bathocuproine sulfonate co-treated with pyrrolidine dithiocarbamic acid] inhibits the reaction [[Tetradecanoylphorbol Acetate co-treated with Ionomycin] more ...	CTD	PMID:14769871\|PMID:15477007
Lcp1	Rat	phorbol 13-acetate 12-myristate	increases phosphorylation	ISO	RGD:1317977	6480464	Tetradecanoylphorbol Acetate results in increased phosphorylation of LCP1 protein	CTD	PMID:14769871
Lcp1	Rat	pirinixic acid	multiple interactions	ISO	RGD:1317978	6480464	PPARA protein promotes the reaction [pirinixic acid results in decreased expression of LCP1 mRNA]	CTD	PMID:20059764
Lcp1	Rat	pirinixic acid	decreases expression	ISO	RGD:1317978	6480464	pirinixic acid results in decreased expression of LCP1 mRNA	CTD	PMID:17426115\|PMID:18445702\|PMID:20059764
Lcp1	Rat	progesterone	increases expression	ISO	RGD:1317977	6480464	Progesterone results in increased expression of LCP1 mRNA	CTD	PMID:20864642\|PMID:21540246
Lcp1	Rat	pyrrolidine dithiocarbamate	multiple interactions	ISO	RGD:1317977	6480464	[bathocuproine sulfonate co-treated with pyrrolidine dithiocarbamic acid] inhibits the reaction [[Tetradecanoylphorbol Acetate co-treated with Ionomycin] more ...	CTD	PMID:15477007
Lcp1	Rat	rotenone	decreases expression	ISO	RGD:1317977	6480464	Rotenone results in decreased expression of LCP1 mRNA	CTD	PMID:29955902
Lcp1	Rat	SB 431542	multiple interactions	ISO	RGD:1317977	6480464	[NOG protein co-treated with Phenylmercuric Acetate co-treated with dorsomorphin co-treated with 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in increased more ...	CTD	PMID:27188386
Lcp1	Rat	silicon dioxide	increases expression	ISO	RGD:1317977	6480464	Silicon Dioxide analog results in increased expression of LCP1 mRNA	CTD	PMID:25895662
Lcp1	Rat	silver atom	increases expression	ISO	RGD:1317978	6480464	Silver results in increased expression of LCP1 mRNA	CTD	PMID:27131904
Lcp1	Rat	silver(0)	increases expression	ISO	RGD:1317978	6480464	Silver results in increased expression of LCP1 mRNA	CTD	PMID:27131904
Lcp1	Rat	sodium arsenate	multiple interactions	ISO	RGD:1317978	6480464	[sodium arsenate co-treated with sodium arsenite co-treated with monomethylarsonic acid co-treated with Cacodylic Acid] results more ...	CTD	PMID:34876320
Lcp1	Rat	sodium arsenite	decreases expression	ISO	RGD:1317977	6480464	sodium arsenite results in decreased expression of LCP1 mRNA	CTD	PMID:29301061
Lcp1	Rat	sodium arsenite	multiple interactions	ISO	RGD:1317978	6480464	[sodium arsenate co-treated with sodium arsenite co-treated with monomethylarsonic acid co-treated with Cacodylic Acid] results more ...	CTD	PMID:34876320
Lcp1	Rat	sodium arsenite	increases expression	ISO	RGD:1317977	6480464	sodium arsenite results in increased expression of LCP1 mRNA	CTD	PMID:38568856
Lcp1	Rat	sotorasib	multiple interactions	ISO	RGD:1317977	6480464	[sotorasib co-treated with trametinib co-treated with NVP-BKM120] results in decreased expression of LCP1 mRNA	CTD	PMID:36139627
Lcp1	Rat	tanespimycin	increases expression	ISO	RGD:1317977	6480464	tanespimycin analog results in increased expression of LCP1 protein	CTD	PMID:31370342
Lcp1	Rat	tanespimycin	multiple interactions	ISO	RGD:1317977	6480464	[tanespimycin co-treated with VER 155008] results in increased expression of LCP1 protein	CTD	PMID:31370342
Lcp1	Rat	temozolomide	decreases expression	ISO	RGD:1317977	6480464	Temozolomide results in decreased expression of LCP1 mRNA	CTD	PMID:31758290
Lcp1	Rat	tert-butyl hydroperoxide	increases expression	ISO	RGD:1317978	6480464	tert-Butylhydroperoxide results in increased expression of LCP1 mRNA	CTD	PMID:14729362
Lcp1	Rat	tetrachloromethane	affects expression	ISO	RGD:1317978	6480464	Carbon Tetrachloride affects the expression of LCP1 mRNA	CTD	PMID:17484886
Lcp1	Rat	tetrachloromethane	increases expression	ISO	RGD:1317978	6480464	Carbon Tetrachloride results in increased expression of LCP1 mRNA	CTD	PMID:31919559
Lcp1	Rat	thioacetamide	increases expression	EXP		6480464	Thioacetamide results in increased expression of LCP1 mRNA	CTD	PMID:34492290
Lcp1	Rat	thiram	increases expression	ISO	RGD:1317977	6480464	Thiram results in increased expression of LCP1 mRNA	CTD	PMID:38568856
Lcp1	Rat	titanium dioxide	increases expression	ISO	RGD:1317978	6480464	titanium dioxide results in increased expression of LCP1 mRNA	CTD	PMID:23557971\|PMID:35295148
Lcp1	Rat	trametinib	multiple interactions	ISO	RGD:1317977	6480464	[sotorasib co-treated with trametinib co-treated with NVP-BKM120] results in decreased expression of LCP1 mRNA	CTD	PMID:36139627
Lcp1	Rat	trichloroethene	increases expression	EXP		6480464	Trichloroethylene results in increased expression of LCP1 mRNA	CTD	PMID:33387578
Lcp1	Rat	triclosan	decreases expression	ISO	RGD:1317977	6480464	Triclosan results in decreased expression of LCP1 mRNA	CTD	PMID:30510588
Lcp1	Rat	trimellitic anhydride	increases expression	ISO	RGD:1317978	6480464	trimellitic anhydride results in increased expression of LCP1 mRNA	CTD	PMID:19042947
Lcp1	Rat	triphenyl phosphate	affects expression	ISO	RGD:1317977	6480464	triphenyl phosphate affects the expression of LCP1 mRNA	CTD	PMID:37042841
Lcp1	Rat	tungsten	decreases expression	ISO	RGD:1317978	6480464	Tungsten results in decreased expression of LCP1 mRNA	CTD	PMID:30912803
Lcp1	Rat	urethane	decreases expression	ISO	RGD:1317977	6480464	Urethane results in decreased expression of LCP1 mRNA	CTD	PMID:28818685
Lcp1	Rat	valproic acid	increases expression	ISO	RGD:1317977	6480464	Valproic Acid results in increased expression of LCP1 mRNA	CTD	PMID:23179753\|PMID:28001369
Lcp1	Rat	valproic acid	decreases methylation	ISO	RGD:1317977	6480464	Valproic Acid results in decreased methylation of LCP1 gene	CTD	PMID:29154799
Lcp1	Rat	vancomycin	decreases expression	ISO	RGD:1317978	6480464	Vancomycin results in decreased expression of LCP1 mRNA	CTD	PMID:18930951
Lcp1	Rat	vinclozolin	affects expression	EXP		6480464	vinclozolin affects the expression of LCP1 mRNA	CTD	PMID:19015723\|PMID:23034163
Lcp1	Rat	zoledronic acid	increases expression	ISO	RGD:1317977	6480464	zoledronic acid results in increased expression of LCP1 mRNA	CTD	PMID:24714768

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Lcp1	Rat	actin filament bundle assembly	involved_in	ISO	RGD:1317977	1624291	PMID:16636079	RGD	PMID:16636079
Lcp1	Rat	actin filament bundle assembly	acts_upstream_of_or_within	IEA	UniProtKB:Q61233\|ensembl:ENSMUSP00000116271	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Lcp1	Rat	actin filament bundle assembly	acts_upstream_of_or_within	ISO	RGD:1317978	1624291	PMID:14756805	RGD	PMID:14756805
Lcp1	Rat	actin filament bundle assembly	involved_in	IBA	MGI:104808\|PANTHER:PTN000462453\|PomBase:SPBC1778.06c\|SGD:S000002536\|TAIR:locus:2049158\|TAIR:locus:2166096\|TAIR:locus:2173867\|TAIR:locus:2177291\|UniProtKB:P13796\|dictyBase:DDB_G0277855	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Lcp1	Rat	actin filament bundle assembly	involved_in	IEA	InterPro:IPR039959	1600115	GO_REF:0000002	InterPro	GO_REF:0000002
Lcp1	Rat	actin filament bundle assembly	involved_in	IEA	UniProtKB:P13796\|ensembl:ENSP00000315757	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Lcp1	Rat	actin filament network formation	involved_in	IBA	PANTHER:PTN000462453\|TAIR:locus:2116382\|TAIR:locus:2173867	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Lcp1	Rat	animal organ regeneration		IEP		1599814		RGD
Lcp1	Rat	cell migration	involved_in	ISO	RGD:1317977	1624291	PMID:16636079	RGD	PMID:16636079
Lcp1	Rat	cell migration	involved_in	IEA	UniProtKB:P13796\|ensembl:ENSP00000315757	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Lcp1	Rat	extracellular matrix disassembly	involved_in	ISO	RGD:1317977	1624291	PMID:24236012	RGD	PMID:24236012
Lcp1	Rat	extracellular matrix disassembly	involved_in	IEA	UniProtKB:P13796\|ensembl:ENSP00000315757	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Lcp1	Rat	positive regulation of podosome assembly	involved_in	ISO	RGD:1317977	1624291	PMID:24236012	RGD	PMID:24236012
Lcp1	Rat	positive regulation of podosome assembly	involved_in	IEA	UniProtKB:P13796\|ensembl:ENSP00000315757	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Lcp1	Rat	protein kinase A signaling	involved_in	ISO	RGD:1317977	1624291	PMID:16636079	RGD	PMID:16636079
Lcp1	Rat	protein kinase A signaling	involved_in	IEA	UniProtKB:P13796\|ensembl:ENSP00000315757	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Lcp1	Rat	regulation of intracellular protein transport	involved_in	ISO	RGD:1317977	1624291	PMID:17294403	RGD	PMID:17294403
Lcp1	Rat	regulation of intracellular protein transport	involved_in	IEA	UniProtKB:P13796\|ensembl:ENSP00000315757	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Lcp1	Rat	T cell activation involved in immune response	involved_in	ISO	RGD:1317977	1624291	PMID:17294403	RGD	PMID:17294403
Lcp1	Rat	T cell activation involved in immune response	involved_in	IEA	UniProtKB:P13796\|ensembl:ENSP00000315757	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Lcp1	Rat	wound healing, spreading of cells	NOT\|involved_in	ISO	RGD:1317977	1624291	PMID:16636079	RGD	PMID:16636079

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Lcp1	Rat	actin cytoskeleton	located_in	ISO	RGD:1317977\|UniProtKB:P13796-1	1624291		RGD	GO_REF:0000052
Lcp1	Rat	actin cytoskeleton	located_in	IEA	UniProtKB:Q61233\|ensembl:ENSMUSP00000116271	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Lcp1	Rat	actin cytoskeleton	located_in	IEA	UniProtKB:P13796\|ensembl:ENSP00000315757	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Lcp1	Rat	actin cytoskeleton	located_in	ISO	RGD:1317978	1624291	PMID:7655078	RGD	PMID:7655078
Lcp1	Rat	actin filament	located_in	ISO	RGD:1317977	1624291	PMID:16636079	RGD	PMID:16636079
Lcp1	Rat	actin filament	located_in	IEA	UniProtKB:P13796\|ensembl:ENSP00000315757	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Lcp1	Rat	actin filament	located_in	ISO	RGD:1317978	1624291	PMID:14756805	RGD	PMID:14756805
Lcp1	Rat	actin filament	located_in	IEA	UniProtKB:Q61233\|ensembl:ENSMUSP00000116271	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Lcp1	Rat	actin filament	is_active_in	IBA	MGI:104808\|PANTHER:PTN000462453\|UniProtKB:P13796	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Lcp1	Rat	actin filament bundle	located_in	ISO	RGD:1317977	1624291	PMID:16636079	RGD	PMID:16636079
Lcp1	Rat	actin filament bundle	located_in	IEA	UniProtKB:P13796\|ensembl:ENSP00000315757	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Lcp1	Rat	actin filament bundle	is_active_in	IBA	PANTHER:PTN000462453\|SGD:S000002536\|UniProtKB:P13796	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Lcp1	Rat	cytoplasm	located_in	IEA	UniProtKB:P13796\|ensembl:ENSP00000315757	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Lcp1	Rat	cytoplasm	located_in	IEA	UniProtKB:Q61233\|ensembl:ENSMUSP00000116271	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Lcp1	Rat	cytoplasm	located_in	ISO	RGD:1317977	1624291	PMID:16636079	RGD	PMID:16636079
Lcp1	Rat	cytoplasm	is_active_in	IBA	CGD:CAL0000191261\|MGI:104807\|MGI:104808\|MGI:104809\|PANTHER:PTN000462453\|PomBase:SPBC1778.06c\|SGD:S000002536\|UniProtKB:P13796\|UniProtKB:P13797\|UniProtKB:Q14651\|ZFIN:ZDB-GENE-991213-5\|dictyBase:DDB_G0276103\|dictyBase:DDB_G0277855	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Lcp1	Rat	cytoplasm	located_in	ISO	RGD:1317978	1624291	PMID:14756805	RGD	PMID:14756805
Lcp1	Rat	cytosol	located_in	ISO	RGD:1317977\|UniProtKB:P13796-1	1624291		RGD	GO_REF:0000052
Lcp1	Rat	cytosol	located_in	IEA	UniProtKB:P13796\|ensembl:ENSP00000315757	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Lcp1	Rat	cytosol	located_in	ISO	RGD:1317977	1624291	PMID:17294403, PMID:2111166	RGD	PMID:17294403\|PMID:2111166
Lcp1	Rat	filopodium	located_in	ISO	RGD:1317977	1624291	PMID:16636079	RGD	PMID:16636079
Lcp1	Rat	filopodium	located_in	IEA	UniProtKB:P13796\|ensembl:ENSP00000315757	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Lcp1	Rat	focal adhesion	located_in	ISO	RGD:1317977	1624291	PMID:16636079	RGD	PMID:16636079
Lcp1	Rat	focal adhesion	located_in	IEA	UniProtKB:P13796\|ensembl:ENSP00000315757	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Lcp1	Rat	glial cell projection	located_in	IEA	UniProtKB:Q61233\|ensembl:ENSMUSP00000116271	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Lcp1	Rat	glial cell projection	located_in	ISO	RGD:1317978	1624291	PMID:14756805	RGD	PMID:14756805
Lcp1	Rat	perinuclear region of cytoplasm	located_in	ISO	RGD:1317977	1624291	PMID:20183869	RGD	PMID:20183869
Lcp1	Rat	perinuclear region of cytoplasm	located_in	IEA	UniProtKB:P13796\|ensembl:ENSP00000315757	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Lcp1	Rat	phagocytic cup	located_in	ISO	RGD:1317978	1624291	PMID:14756805	RGD	PMID:14756805
Lcp1	Rat	phagocytic cup	located_in	IEA	UniProtKB:Q61233\|ensembl:ENSMUSP00000116271	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Lcp1	Rat	plasma membrane	located_in	ISO	RGD:1317977\|UniProtKB:P13796-1	1624291		RGD	GO_REF:0000052
Lcp1	Rat	plasma membrane	located_in	IEA	UniProtKB:P13796\|ensembl:ENSP00000315757	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Lcp1	Rat	podosome	located_in	ISO	RGD:1317977	1624291	PMID:24236012	RGD	PMID:24236012
Lcp1	Rat	podosome	located_in	IEA	UniProtKB:P13796\|ensembl:ENSP00000315757	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Lcp1	Rat	ruffle	located_in	ISO	RGD:1317977	1624291	PMID:16636079	RGD	PMID:16636079
Lcp1	Rat	ruffle	located_in	IEA	UniProtKB:Q61233\|ensembl:ENSMUSP00000116271	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Lcp1	Rat	ruffle	located_in	ISO	RGD:1317978	1624291	PMID:14756805	RGD	PMID:14756805
Lcp1	Rat	ruffle	located_in	IEA	UniProtKB:P13796\|ensembl:ENSP00000315757	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Lcp1	Rat	stress fiber	located_in	ISO	RGD:1317977	1624291	PMID:16636079	RGD	PMID:16636079
Lcp1	Rat	stress fiber	located_in	IEA	UniProtKB:P13796\|ensembl:ENSP00000315757	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Lcp1	Rat	actin binding	enables	IEA	UniProtKB-KW:KW-0009	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Lcp1	Rat	actin filament binding	enables	ISO	RGD:1317977	1624291	PMID:16636079	RGD	PMID:16636079
Lcp1	Rat	actin filament binding	enables	ISO	RGD:1317978	1624291	PMID:14756805	RGD	PMID:14756805
Lcp1	Rat	actin filament binding	enables	IBA	CGD:CAL0000191261\|MGI:104808\|PANTHER:PTN000462453\|PomBase:SPBC1778.06c\|SGD:S000002536\|TAIR:locus:2177291\|UniProtKB:P13796\|dictyBase:DDB_G0277855	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Lcp1	Rat	actin filament binding	enables	IEA	UniProtKB:P13796\|ensembl:ENSP00000315757	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Lcp1	Rat	actin filament binding	enables	IEA	UniProtKB:Q61233\|ensembl:ENSMUSP00000116271	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Lcp1	Rat	actin filament binding	enables	IEA	InterPro:IPR039959	1600115	GO_REF:0000002	InterPro	GO_REF:0000002
Lcp1	Rat	calcium ion binding	enables	IEA	InterPro:IPR002048	1600115	GO_REF:0000002	InterPro	GO_REF:0000002
Lcp1	Rat	GTPase binding	enables	ISO	RGD:1317977	1624291	UniProtKB:P32455 PMID:24337748	RGD	PMID:24337748
Lcp1	Rat	GTPase binding	enables	IEA	UniProtKB:P13796\|ensembl:ENSP00000315757	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Lcp1	Rat	identical protein binding	enables	IEA	UniProtKB:Q61233\|ensembl:ENSMUSP00000116271	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Lcp1	Rat	integrin binding	enables	ISO	RGD:1317977	1624291	UniProtKB:P05107\|UniProtKB:P05556 PMID:20183869	RGD	PMID:20183869
Lcp1	Rat	integrin binding	enables	IEA	UniProtKB:P13796\|ensembl:ENSP00000315757	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Lcp1	Rat	metal ion binding	enables	IEA	UniProtKB-KW:KW-0479	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Lcp1	Rat	protein binding	enables	ISO	RGD:1317978	1624291	PR:O70200\|UniProtKB:P47811 PMID:14756805, PMID:15102471	RGD	PMID:14756805\|PMID:15102471

Disease Annotations Click to see Annotation Detail View

Acute Otitis Media (ISO)

Experimental Liver Cirrhosis (ISO)

hereditary breast ovarian cancer syndrome (ISO)

nicotine dependence (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(S)-nicotine (ISO)

1,2-dimethylhydrazine (ISO)

1-naphthyl isothiocyanate (EXP)

17beta-estradiol (ISO)

17beta-hydroxy-5alpha-androstan-3-one (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4,6-trinitrobenzenesulfonic acid (ISO)

2-palmitoylglycerol (ISO)

4,4'-diaminodiphenylmethane (EXP)

4,4'-sulfonyldiphenol (ISO)

acetamide (EXP)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

alpha-Zearalanol (EXP)

aniline (EXP)

antirheumatic drug (ISO)

Aroclor 1254 (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenous acid (ISO)

bathocuproine disulfonic acid (ISO)

benzo[a]pyrene (ISO)

bis(2-chloroethyl) sulfide (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

bleomycin A2 (ISO)

buspirone (EXP)

cadmium dichloride (EXP,ISO)

calyculin A (ISO)

cannabidiol (ISO)

cantharidin (ISO)

carbamazepine (ISO)

carbon nanotube (ISO)

chlorpyrifos (ISO)

ciguatoxin CTX1B (ISO)

cisplatin (EXP)

clofibrate (ISO)

Cuprizon (EXP)

curcumin (ISO)

cyclosporin A (ISO)

deoxynivalenol (ISO)

diarsenic trioxide (ISO)

dibutyl phthalate (EXP)

dimethylarsinic acid (ISO)

dimethylarsinous acid (ISO)

diuron (ISO)

dorsomorphin (ISO)

endosulfan (EXP)

enzalutamide (ISO)

ethanol (ISO)

flutamide (EXP)

folic acid (ISO)

gentamycin (EXP)

hydroxyflutamide (ISO)

indoles (EXP)

ionomycin (ISO)

KT 5926 (ISO)

lead diacetate (ISO)

lidocaine (EXP)

lithium chloride (ISO)

methylarsonic acid (ISO)

mono(2-ethylhexyl) phthalate (ISO)

N-methyl-4-phenylpyridinium (ISO)

N-nitrosodimethylamine (EXP)

nickel atom (ISO)

nicotine (ISO)

nimesulide (EXP)

okadaic acid (ISO)

oxycodone (EXP)

paracetamol (EXP,ISO)

phenylmercury acetate (ISO)

phorbol 13-acetate 12-myristate (ISO)

pirinixic acid (ISO)

progesterone (ISO)

pyrrolidine dithiocarbamate (ISO)

rotenone (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

silver atom (ISO)

silver(0) (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

sotorasib (ISO)

tanespimycin (ISO)

temozolomide (ISO)

tert-butyl hydroperoxide (ISO)

tetrachloromethane (ISO)

thioacetamide (EXP)

thiram (ISO)

titanium dioxide (ISO)

trametinib (ISO)

trichloroethene (EXP)

triclosan (ISO)

trimellitic anhydride (ISO)

triphenyl phosphate (ISO)

tungsten (ISO)

urethane (ISO)

valproic acid (ISO)

vancomycin (ISO)

vinclozolin (EXP)

zoledronic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

actin filament bundle assembly (IBA,IEA,ISO)

actin filament network formation (IBA)

animal organ regeneration (IEP)

cell migration (IEA,ISO)

extracellular matrix disassembly (IEA,ISO)

positive regulation of podosome assembly (IEA,ISO)

protein kinase A signaling (IEA,ISO)

regulation of intracellular protein transport (IEA,ISO)

T cell activation involved in immune response (IEA,ISO)

wound healing, spreading of cells (ISO)

Cellular Component

actin cytoskeleton (IEA,ISO)

actin filament (IBA,IEA,ISO)

actin filament bundle (IBA,IEA,ISO)

cytoplasm (IBA,IEA,ISO)

cytosol (IEA,ISO)

filopodium (IEA,ISO)

focal adhesion (IEA,ISO)

glial cell projection (IEA,ISO)

perinuclear region of cytoplasm (IEA,ISO)

phagocytic cup (IEA,ISO)

plasma membrane (IEA,ISO)

podosome (IEA,ISO)

ruffle (IEA,ISO)

stress fiber (IEA,ISO)

Molecular Function

actin binding (IEA)

actin filament binding (IBA,IEA,ISO)

calcium ion binding (IEA)

GTPase binding (IEA,ISO)

identical protein binding (IEA)

integrin binding (IEA,ISO)

metal ion binding (IEA)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
4.	GOA pipeline	RGD automated data pipeline
5.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
7.	Comprehensive gene review and curation	RGD comprehensive gene curation
8.	Proteomic analysis of differential protein expression in early process of pancreatic regeneration in pancreatectomized rats.	Yang M, etal., Acta Pharmacol Sin. 2006 May;27(5):568-78.
9.	Substance dependence low-density whole genome association study in two distinct American populations.	Yu Y, etal., Hum Genet. 2008 Jun;123(5):495-506. doi: 10.1007/s00439-008-0501-0. Epub 2008 Apr 26.

Additional References at PubMed

PMID:2111166	PMID:7655078	PMID:11591653	PMID:12477932	PMID:14756805	PMID:16502470	PMID:16636079	PMID:17294403	PMID:19056867	PMID:20183869	PMID:20458337	PMID:21922118
PMID:22664934	PMID:23533145	PMID:24337748	PMID:33450132	PMID:36574182

Genomics

Comparative Map Data

Lcp1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	15	56,846,375 - 56,954,090 (+)	NCBI		GRCr8
mRatBN7.2	15	50,443,300 - 50,544,682 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	15	50,488,149 - 50,544,680 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	15	54,630,232 - 54,686,870 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	15	55,748,540 - 55,805,188 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	15	52,580,535 - 52,637,056 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	15	57,170,566 - 57,277,811 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	15	57,221,292 - 57,277,811 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	15	60,888,052 - 60,988,851 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	15	56,034,457 - 56,091,880 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	15	56,050,236 - 56,107,660 (+)	NCBI
Celera	15	50,120,119 - 50,176,635 (+)	NCBI		Celera
Cytogenetic Map	15	q11	NCBI

LCP1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	13	46,125,923 - 46,182,177 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	13	46,125,920 - 46,211,871 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	13	46,700,058 - 46,756,312 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	13	45,598,060 - 45,654,395 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	13	45,598,059 - 45,654,395	NCBI
Celera	13	27,755,067 - 27,811,461 (-)	NCBI		Celera
Cytogenetic Map	13	q14.13	NCBI
HuRef	13	27,497,877 - 27,554,218 (-)	NCBI		HuRef
CHM1_1	13	46,669,191 - 46,725,269 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	13	45,347,305 - 45,403,192 (-)	NCBI		T2T-CHM13v2.0

Lcp1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	14	75,368,570 - 75,468,282 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	14	75,368,541 - 75,468,282 (+)	Ensembl		GRCm39 Ensembl
GRCm38	14	75,131,105 - 75,230,842 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	14	75,131,101 - 75,230,842 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	14	75,536,232 - 75,630,615 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	14	73,870,580 - 73,964,963 (+)	NCBI		MGSCv36	mm8
Celera	14	72,636,371 - 72,732,832 (+)	NCBI		Celera
Cytogenetic Map	14	D3	NCBI
cM Map	14	39.63	NCBI

Lcp1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955518	3,814,840 - 3,891,299 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955518	3,815,181 - 3,863,440 (-)	NCBI	ChiLan1.0	ChiLan1.0

LCP1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	14	45,180,206 - 45,266,387 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	13	36,234,410 - 36,320,594 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	13	26,820,846 - 26,906,916 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3

LCP1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	22	4,955,453 - 5,059,654 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	22	4,992,347 - 5,059,636 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	22	4,965,424 - 5,047,265 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	22	5,070,372 - 5,176,432 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	22	5,123,064 - 5,175,065 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	22	4,852,728 - 4,958,773 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	22	4,916,029 - 5,022,003 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	22	4,921,102 - 5,027,186 (+)	NCBI		UU_Cfam_GSD_1.0

Lcp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	156,224,062 - 156,314,492 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936857	646,118 - 698,035 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936857	646,363 - 726,338 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

LCP1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	11	21,126,539 - 21,223,550 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	11	21,126,504 - 21,223,543 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	11	21,535,029 - 21,685,279 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

LCP1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	3	24,182,086 - 24,238,746 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	3	24,182,076 - 24,238,651 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666057	19,776,506 - 19,834,713 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Lcp1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624748	8,779,395 - 8,835,500 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624748	8,740,563 - 8,833,091 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Lcp1
560 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	594
Count of miRNA genes:	266
Interacting mature miRNAs:	329
Transcripts:	ENSRNOT00000014502
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
631273	Lecl2	Lens clarity QTL 2		0.001	lens clarity trait (VT:0001304)	age of onset/diagnosis of cataract (CMO:0001584)	15	10596089	55596089	Rat
1300144	Rf23	Renal function QTL 23	3.61		renal blood flow trait (VT:2000006)	absolute change in renal vascular resistance (CMO:0001900)	15	40631268	98288169	Rat
2300167	Bmd63	Bone mineral density QTL 63	5.9	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	15	11111142	56111142	Rat
1331729	Rf42	Renal function QTL 42	3.071		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	15	17362897	73690657	Rat
152025253	Hrtrt24	Heart rate QTL 24	3.82		heart pumping trait (VT:2000009)		15	27885774	86257085	Rat
10054130	Srcrt8	Stress Responsive Cort QTL 8	2.18	0.0085	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	15	22117933	67117933	Rat
1582227	Gluco30	Glucose level QTL 30	3.6	0.0003	blood glucose amount (VT:0000188)	absolute change in blood glucose level area under curve (CMO:0002034)	15	28030665	82262678	Rat
1582228	Epfw3	Epididymal fat weight QTL 3	4.1	0.0002	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	15	28030665	82262678	Rat
2300173	Bmd62	Bone mineral density QTL 62	12.8	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	15	11111142	56111142	Rat
1578646	Bmd18	Bone mineral density QTL 18	5.2		femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	15	22806240	98288169	Rat
1578647	Bmd17	Bone mineral density QTL 17	4		femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	15	22806240	98288169	Rat
61424	Scl1	Serum cholesterol level QTL 1	7.7	0.001	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	15	16725528	80672115	Rat
1582251	Gluco24	Glucose level QTL 24	3.2	0.0008	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	15	5530756	50530756	Rat
2293686	Bmd36	Bone mineral density QTL 36	7.4	0.0001	femur strength trait (VT:0010010)	femoral neck ultimate force (CMO:0001703)	15	33611058	71477291	Rat
1598828	Glom14	Glomerulus QTL 14	2.5		kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	15	34054139	79054139	Rat
2317750	Glom26	Glomerulus QTL 26	4.3		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	15	12496141	65205939	Rat
2298549	Neuinf12	Neuroinflammation QTL 12	3.5		nervous system integrity trait (VT:0010566)	spinal cord beta-2 microglobulin mRNA level (CMO:0002125)	15	1	55302115	Rat
2293691	Bmd37	Bone mineral density QTL 37	6.6	0.0001	femur strength trait (VT:0010010)	femur total energy absorbed before break (CMO:0001677)	15	33611058	71477291	Rat
2293688	Bss29	Bone structure and strength QTL 29	5.31	0.0001	femur morphology trait (VT:0000559)	femur midshaft cortical cross-sectional area (CMO:0001663)	15	11111142	56111142	Rat
1582242	Gluco28	Glucose level QTL 28	3.3	0.0008	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	15	28030665	82262678	Rat
1578660	Bss19	Bone structure and strength QTL 19	4.3		femur morphology trait (VT:0000559)	bone trabecular cross-sectional area (CMO:0002311)	15	22806240	98288169	Rat
1582244	Bw79	Body weight QTL 79	4	0.0002	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	15	28030665	82262678	Rat
1582214	Stl21	Serum triglyceride level QTL 21	3.1	0.022	blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	15	28030665	82262678	Rat

Markers in Region

D15Mgh2

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	15	56,941,215 - 56,941,352 (+)	Marker Load Pipeline
mRatBN7.2	15	50,531,797 - 50,531,936 (+)	MAPPER	mRatBN7.2
Rnor_6.0	15	57,264,937 - 57,265,073	NCBI	Rnor6.0
Rnor_5.0	15	60,975,977 - 60,976,113	UniSTS	Rnor5.0
RGSC_v3.4	15	56,079,088 - 56,079,224	UniSTS	RGSC3.4
RGSC_v3.4	15	56,079,087 - 56,079,224	RGD	RGSC3.4
RGSC_v3.1	15	56,094,867 - 56,095,004	RGD
Celera	15	50,163,764 - 50,163,900	UniSTS
Cytogenetic Map	15	q11	UniSTS

RH128715

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	15	50,544,425 - 50,544,605 (+)	MAPPER	mRatBN7.2
Rnor_6.0	15	57,277,555 - 57,277,734	NCBI	Rnor6.0
Rnor_5.0	15	60,988,595 - 60,988,774	UniSTS	Rnor5.0
RGSC_v3.4	15	56,091,626 - 56,091,805	UniSTS	RGSC3.4
Celera	15	50,176,381 - 50,176,560	UniSTS
Cytogenetic Map	15	q11	UniSTS

BI273777

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	15	50,543,552 - 50,543,665 (+)	MAPPER	mRatBN7.2
Rnor_6.0	15	57,276,682 - 57,276,794	NCBI	Rnor6.0
Rnor_5.0	15	60,987,722 - 60,987,834	UniSTS	Rnor5.0
RGSC_v3.4	15	56,090,753 - 56,090,865	UniSTS	RGSC3.4
Celera	15	50,175,508 - 50,175,620	UniSTS
Cytogenetic Map	15	q11	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001012044	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006252318	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006252319	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006252322	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017599707	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017599708	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017599709	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063274316	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC110315	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC083855	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ223279	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ227905	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000015	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000014502 ⟹ ENSRNOP00000014502

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	15	50,488,149 - 50,544,680 (+)	Ensembl
Rnor_6.0 Ensembl	15	57,221,292 - 57,277,809 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000082191 ⟹ ENSRNOP00000071263

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	15	50,508,815 - 50,544,680 (+)	Ensembl
Rnor_6.0 Ensembl	15	57,241,968 - 57,277,811 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000094863 ⟹ ENSRNOP00000092952

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	15	50,488,149 - 50,544,680 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000105314 ⟹ ENSRNOP00000083584

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	15	50,508,815 - 50,544,680 (+)	Ensembl

RefSeq Acc Id:

NM_001012044 ⟹ NP_001012044

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	56,897,571 - 56,954,088 (+)	NCBI
mRatBN7.2	15	50,488,149 - 50,544,680 (+)	NCBI
Rnor_6.0	15	57,221,292 - 57,277,809 (+)	NCBI
Rnor_5.0	15	60,888,052 - 60,988,851 (+)	NCBI
RGSC_v3.4	15	56,034,457 - 56,091,880 (+)	RGD
Celera	15	50,120,119 - 50,176,635 (+)	RGD

Sequence:

show sequence

CCGAGGACAGTGTCTCTACAAGGTCTGTCACCTAAAGCAGTCAAAATGGCCAGAGGATCCGTGT
CTGATGAAGAAATGATGGAGCTCAGAGAGGCTTTTGCCAAAGTCGATACTGACGGCAACGGGTA
CATCAGCTGCAATGAACTGAATGACTTGTTCAAGGCGGCCTGCCTGCCTCTGCCTGGCTACCGA
GTGAGAGAAATCACAGAGAACCTGATGGCCACAGGTGACCTGGACCAAGATGGGAAGATTAGCT
TTGATGAGTTTATCAAGGTCTTCCATGGCTTAAAAAGCACCGAGGTTGCCAAAACCTTCCGAAA
AGCTATCAACAAGAAGGAAGGGATCTGTGCGATCGGTGGCACCTCTGAGCAGTCCAGCGTGGGT
ACCCAGCATTCCTACTCAGAGGAAGAAAAGTATGCCTTTGTCAACTGGATAAACAAAGCCCTGG
AGAATGACCCTGACTGCCGGCACGTCATCCCCATGAACCCGAACACCGATGATCTCTTCAATGC
TGTCGGGGATGGCATAGTTCTTTGTAAAATGGTCAACCTGTCTGTGCCAGACACAATTGATGAA
AGAACAATCAACAAGAAGAAGCTCACACCGTTCACCATTCAGGAAAACTTGAACTTAGCTCTGA
ACTCTGCCTCGGCCATCGGATGCCATGTAGTTAATATAGGGGCTGAGGACCTGAAGGAGGGGAA
GCCATATCTGGTCCTGGGACTTTTGTGGCAAGTTATCAAGATTGGGTTGTTTGCTGACATTGAA
CTCAGCAGAAATGAAGCTCTGATTGCTCTTTTGAGAGAAGGAGAGAGCCTAGAGGATTTGATGA
AGTTGTCTCCTGAAGAACTCCTGTTGCGGTGGGCGAACTACCACCTAGAAAATGCAGGCTGCAC
CAAAATCACCAACTTCAGCACTGACATCAAGGACTCGAAAGCTTATTACCACCTGCTCGAGCAG
GTGGCTCCGAGAGGAGATGAAGAAGGGATCCCGGCTGTAGTGATTGACATGTCAGGACTGAGGG
AGAAGGATGACATCCAGAGAGCAGAGTGTATGTTGCAGCAGGCAGAGAGGCTGGGCTGCCGGCA
GTTTGTCACAGCCACTGATGTTGTCCGAGGGAACCCCAAGTTGAACCTGGCCTTCATTGCCAAC
CTCTTTAACAAATACCCTGCCTTGCACAAACCGGAGAACCAGGACATTGACTGGGGGGCTCTCG
AAGGTGAGACGAGGGAAGAGCGGACGTTCAGGAACTGGATGAACTCACTGGGAGTTAACCCTGG
AGTCAATCATTTGTACAGCGACTTATCCGACGCCCTGGTCATCTTCCAGCTCTATGAAAAGATC
AAAGTCCCTGTTGACTGGAACAGAGTAAACAGACCTCCATACCCCAAGCTGGGGGGCAACATGA
AAAAGCTCGAGAACTGTAATTATGCAGTGGATCTGGGGAAGAATCAAGCTAAATTTTCCCTAGT
TGGTATCGCAGGACAAGACCTCAATGAAGGAAACCGCACTCTGACGCTGGCATTGGTTTGGCAG
CTCATGAGAAGGTACACACTGAATATCCTGGAAGATATTGGAGGTGGTCAGAAGGTCAATGATG
ACATTATTGTCAACTGGGTGAACACGACATTGAAGGAGGCACAGAAAAGTTCGTCCATCACTAG
CTTCAAGGACCCAAAGATCAGCACCAGCCTCCCGGTTCTGGATCTCATCGATGCCATTCAGCCA
GGCTCCATAAACTATGACCTTCTGAAGACAGAAAACCTGGATGATGAAGAGAAGCTCAACAATG
CAAAGTATGCTATCTCCATGGCCAGAAAAATCGGAGCAAGAGTGTATGCCCTTCCAGAAGACCT
GGTTGAAGTGAACCCCAAAATGGTCATGACAGTGTTCGCTTGCCTCATGGGGAAAGGGATGAAG
AGGGTGTAAGTCCCACAGGAGCAAGCCAGAAAGAGACACCATCAACCCTGAGGGTCAGCATGTG
ATGCTCCCAGGATACAGAGGACCATTCAAGCCATTCCAAAGTCCTGAACCTTGGAGACATTGTC
TGAAATTCGCATATTTGTTCTGCCAAGTAGCTTCTGCTATAGTCGAGCTTCTCTTTTGTTGTCC
CCACCCCCAGGAGATCTACTCGCCTACAGATTTTTTTCTTTTATTCTTTGAAATTCTTTGGGGG
AGGGGGGAGAGTTAAAAAGAAGTTATTTCCAGATGCTCACCCCACCCCCGACACCCTTGCTTTC
ACTGATAGCCAAGGATATAGACTACATTGTTCTTAAGGGTCACCTGATCTCTTGAGCCAGTTTG
ATCTAGCTGCTTTTTGCCTTGTTCAAACTGAGGACCTGGAAGGGATCGTCAAACTTGCCTTAAA
TAAAGCCTGTCACTAGAGGCTGACACTGGATGGTCACAGCCCTTCCTTGCATCTCCTCTCAGCT
TGTCTCCCTGTGAGTTTGCTCCAATCCCCTCAGAACCATACCTGCTCTGTGGTCCCCATTTTTG
CCAGCCTTGTCTCTAGGCTACTGGAGTATCTGACAAATCAGTCAAGCTCCCAGGAGTCTCTGGG
AGACTGAAAAACTGGGGTCTCAAAGAAAGTGTAATGGAGAGTAAAACCACTAGGGGGCAGTATG
GTGGGACCACAAAGCATCTACCCTTCTGTGTATATCTCCACACCTTTAACTCCTCTTGTTAGAG
AGCTGCTTATTGTGGTGTTGACAAAATGTCTGATGACAGTTGGAAGCAATCCTGCATAACTTCA
TTTGCTTTTAGACATCGACATATTTGATTGTCACCAGGCCATATTACCAATACTCACTTTGTTG
GTACTATAAAAGCTTTTGCCTCCCTAAAGTTTCTGTAAGTGGGGGGTTGATATGTGCCAATAAT
CTATGTCCCTGCCTCACCCAAATGCTTGCACGGGCACATACGCATATGTAGCTGGATGCCAAGA
GTACCATGTTGACTAGGAACTGCCTGGAATTCAAAACAGAAAAGGGACAGCATGAATTTGAATA
GCTCCCACTAGATAAGCAATTTCCACGAAAACTTACCAAAAGCTAAAACTCCACAGAGCATTGT
GAACCAAAGGTAGACTCCCTTTGCATTAGTGAAAGTCTTACTCCCACTAATGGGACTTCGTTGT
CTTCCAAAGCAGTGGAAATGCAGGATCTCAACTTCATCCCCTGACAGTGGGCTCAGGAAACCAA
TAGATGGCTCTTTCCAGCTCCCAACCAGTATTCCCGCTGCATCCGAATGCAAAGTGTTTGGCTG
TGACTTTAGTCTGAACATCATGTAGCCTCAGATGATGTTTGCCCATCTGCCTCCACGAAGTAAG
GATATTATTGTTGCCTTAATGGAAAAATGAAGATAAATCATGTTTAAAAAAATCTTTCCAAATA
AAATGTTCCCAATTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006252319 ⟹ XP_006252381

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	56,895,449 - 56,954,090 (+)	NCBI
mRatBN7.2	15	50,486,027 - 50,544,682 (+)	NCBI
Rnor_6.0	15	57,219,117 - 57,277,811 (+)	NCBI
Rnor_5.0	15	60,888,052 - 60,988,851 (+)	NCBI

Sequence:

show sequence

AGCTCAAAGTTCCTCTCCTGCTTAATCATCACAAGCAATGTTTAAACCGCGAATGAAAAAGCCT
TGCAGCCTCGCCTGGGAACGTCTGGTGTAACACCTCCTCCACAACCGCCCACCCCTGGGTGGAT
TTTCATCACTGAGAGACGCAGATGAAGAGATTACCATGGAGGAACCTGAATGGTGAAATCCAGG
ATGTGGCTCCAGGCAGTGACAGATTCCTCGGGTCTCCTGTGATCAGGCACAAGCCACGCACAGA
ATGCTCCTGTTCTCTGTTCCCCAGTTACTTCCTGCCCTGTGACCACACACCCCTGCCTGACAGG
GCTGCTCTGTAGATCTGAAGGACTGGGCTTTCTGACCACACAGCCCCGCTGCCACCGAGGACAG
TGTCTCTACAAGGTCTGTCACCTAAAGCAGTCAAAATGGCCAGAGGATCCGTGTCTGATGAAGA
AATGATGGAGCTCAGAGAGGCTTTTGCCAAAGTCGATACTGACGGCAACGGGTACATCAGCTGC
AATGAACTGAATGACTTGTTCAAGGCGGCCTGCCTGCCTCTGCCTGGCTACCGAGTGAGAGAAA
TCACAGAGAACCTGATGGCCACAGGTGACCTGGACCAAGATGGGAAGATTAGCTTTGATGAGTT
TATCAAGGTCTTCCATGGCTTAAAAAGCACCGAGGTTGCCAAAACCTTCCGAAAAGCTATCAAC
AAGAAGGAAGGGATCTGTGCGATCGGTGGCACCTCTGAGCAGTCCAGCGTGGGTACCCAGCATT
CCTACTCAGAGGAAGAAAAGTATGCCTTTGTCAACTGGATAAACAAAGCCCTGGAGAATGACCC
TGACTGCCGGCACGTCATCCCCATGAACCCGAACACCGATGATCTCTTCAATGCTGTCGGGGAT
GGCATAGTTCTTTGTAAAATGGTCAACCTGTCTGTGCCAGACACAATTGATGAAAGAACAATCA
ACAAGAAGAAGCTCACACCGTTCACCATTCAGGAAAACTTGAACTTAGCTCTGAACTCTGCCTC
GGCCATCGGATGCCATGTAGTTAATATAGGGGCTGAGGACCTGAAGGAGGGGAAGCCATATCTG
GTCCTGGGACTTTTGTGGCAAGTTATCAAGATTGGGTTGTTTGCTGACATTGAACTCAGCAGAA
ATGAAGCTCTGATTGCTCTTTTGAGAGAAGGAGAGAGCCTAGAGGATTTGATGAAGTTGTCTCC
TGAAGAACTCCTGTTGCGGTGGGCGAACTACCACCTAGAAAATGCAGGCTGCACCAAAATCACC
AACTTCAGCACTGACATCAAGGACTCGAAAGCTTATTACCACCTGCTCGAGCAGGTGGCTCCGA
GAGGAGATGAAGAAGGGATCCCGGCTGTAGTGATTGACATGTCAGGACTGAGGGAGAAGGATGA
CATCCAGAGAGCAGAGTGTATGTTGCAGCAGGCAGAGAGGCTGGGCTGCCGGCAGTTTGTCACA
GCCACTGATGTTGTCCGAGGGAACCCCAAGTTGAACCTGGCCTTCATTGCCAACCTCTTTAACA
AATACCCTGCCTTGCACAAACCGGAGAACCAGGACATTGACTGGGGGGCTCTCGAAGGTGAGAC
GAGGGAAGAGCGGACGTTCAGGAACTGGATGAACTCACTGGGAGTTAACCCTGGAGTCAATCAT
TTGTACAGCGACTTATCCGACGCCCTGGTCATCTTCCAGCTCTATGAAAAGATCAAAGTCCCTG
TTGACTGGAACAGAGTAAACAGACCTCCATACCCCAAGCTGGGGGGCAACATGAAAAAGCTCGA
GAACTGTAATTATGCAGTGGATCTGGGGAAGAATCAAGCTAAATTTTCCCTAGTTGGTATCGCA
GGACAAGACCTCAATGAAGGAAACCGCACTCTGACGCTGGCATTGGTTTGGCAGCTCATGAGAA
GGTACACACTGAATATCCTGGAAGATATTGGAGGTGGTCAGAAGGTCAATGATGACATTATTGT
CAACTGGGTGAACACGACATTGAAGGAGGCACAGAAAAGTTCGTCCATCACTAGCTTCAAGGAC
CCAAAGATCAGCACCAGCCTCCCGGTTCTGGATCTCATCGATGCCATTCAGCCAGGCTCCATAA
ACTATGACCTTCTGAAGACAGAAAACCTGGATGATGAAGAGAAGCTCAACAATGCAAAGTATGC
TATCTCCATGGCCAGAAAAATCGGAGCAAGAGTGTATGCCCTTCCAGAAGACCTGGTTGAAGTG
AACCCCAAAATGGTCATGACAGTGTTCGCTTGCCTCATGGGGAAAGGGATGAAGAGGGTGTAAG
TCCCACAGGAGCAAGCCAGAAAGAGACACCATCAACCCTGAGGGTCAGCATGTGATGCTCCCAG
GATACAGAGGACCATTCAAGCCATTCCAAAGTCCTGAACCTTGGAGACATTGTCTGAAATTCGC
ATATTTGTTCTGCCAAGTAGCTTCTGCTATAGTCGAGCTTCTCTTTTGTTGTCCCCACCCCCAG
GAGATCTACTCGCCTACAGATTTTTTTCTTTTATTCTTTGAAATTCTTTGGGGGAGGGGGGAGA
GTTAAAAAGAAGTTATTTCCAGATGCTCACCCCACCCCCGACACCCTTGCTTTCACTGATAGCC
AAGGATATAGACTACATTGTTCTTAAGGGTCACCTGATCTCTTGAGCCAGTTTGATCTAGCTGC
TTTTTGCCTTGTTCAAACTGAGGACCTGGAAGGGATCGTCAAACTTGCCTTAAATAAAGCCTGT
CACTAGAGGCTGACACTGGATGGTCACAGCCCTTCCTTGCATCTCCTCTCAGCTTGTCTCCCTG
TGAGTTTGCTCCAATCCCCTCAGAACCATACCTGCTCTGTGGTCCCCATTTTTGCCAGCCTTGT
CTCTAGGCTACTGGAGTATCTGACAAATCAGTCAAGCTCCCAGGAGTCTCTGGGAGACTGAAAA
ACTGGGGTCTCAAAGAAAGTGTAATGGAGAGTAAAACCACTAGGGGGCAGTATGGTGGGACCAC
AAAGCATCTACCCTTCTGTGTATATCTCCACACCTTTAACTCCTCTTGTTAGAGAGCTGCTTAT
TGTGGTGTTGACAAAATGTCTGATGACAGTTGGAAGCAATCCTGCATAACTTCATTTGCTTTTA
GACATCGACATATTTGATTGTCACCAGGCCATATTACCAATACTCACTTTGTTGGTACTATAAA
AGCTTTTGCCTCCCTAAAGTTTCTGTAAGTGGGGGGTTGATATGTGCCAATAATCTATGTCCCT
GCCTCACCCAAATGCTTGCACGGGCACATACGCATATGTAGCTGGATGCCAAGAGTACCATGTT
GACTAGGAACTGCCTGGAATTCAAAACAGAAAAGGGACAGCATGAATTTGAATAGCTCCCACTA
GATAAGCAATTTCCACGAAAACTTACCAAAAGCTAAAACTCCACAGAGCATTGTGAACCAAAGG
TAGACTCCCTTTGCATTAGTGAAAGTCTTACTCCCACTAATGGGACTTCGTTGTCTTCCAAAGC
AGTGGAAATGCAGGATCTCAACTTCATCCCCTGACAGTGGGCTCAGGAAACCAATAGATGGCTC
TTTCCAGCTCCCAACCAGTATTCCCGCTGCATCCGAATGCAAAGTGTTTGGCTGTGACTTTAGT
CTGAACATCATGTAGCCTCAGATGATGTTTGCCCATCTGCCTCCACGAAGTAAGGATATTATTG
TTGCCTTAATGGAAAAATGAAGATAAATCATGTTTAAAAAAATCTTTCCAAATAAAATGTTCCC
AATTCTG

hide sequence

RefSeq Acc Id:

XM_063274316 ⟹ XP_063130386

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	56,846,375 - 56,954,090 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001012044	(Get FASTA)	NCBI Sequence Viewer
	XP_006252381	(Get FASTA)	NCBI Sequence Viewer
	XP_063130386	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH83855	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000014502
	ENSRNOP00000014502.3
	ENSRNOP00000071263
	ENSRNOP00000071263.1
	ENSRNOP00000083584.1
	ENSRNOP00000092952.1

RefSeq Acc Id:

NP_001012044 ⟸ NM_001012044

- UniProtKB:

Q5XI38 (UniProtKB/TrEMBL), A0A8I6AGS0 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MARGSVSDEEMMELREAFAKVDTDGNGYISCNELNDLFKAACLPLPGYRVREITENLMATGDLD
QDGKISFDEFIKVFHGLKSTEVAKTFRKAINKKEGICAIGGTSEQSSVGTQHSYSEEEKYAFVN
WINKALENDPDCRHVIPMNPNTDDLFNAVGDGIVLCKMVNLSVPDTIDERTINKKKLTPFTIQE
NLNLALNSASAIGCHVVNIGAEDLKEGKPYLVLGLLWQVIKIGLFADIELSRNEALIALLREGE
SLEDLMKLSPEELLLRWANYHLENAGCTKITNFSTDIKDSKAYYHLLEQVAPRGDEEGIPAVVI
DMSGLREKDDIQRAECMLQQAERLGCRQFVTATDVVRGNPKLNLAFIANLFNKYPALHKPENQD
IDWGALEGETREERTFRNWMNSLGVNPGVNHLYSDLSDALVIFQLYEKIKVPVDWNRVNRPPYP
KLGGNMKKLENCNYAVDLGKNQAKFSLVGIAGQDLNEGNRTLTLALVWQLMRRYTLNILEDIGG
GQKVNDDIIVNWVNTTLKEAQKSSSITSFKDPKISTSLPVLDLIDAIQPGSINYDLLKTENLDD
EEKLNNAKYAISMARKIGARVYALPEDLVEVNPKMVMTVFACLMGKGMKRV

hide sequence

RefSeq Acc Id:	XP_006252381 ⟸ XM_006252319
- Peptide Label:	isoform X1
- UniProtKB:	Q5XI38 (UniProtKB/TrEMBL), A0A8I6AGS0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MARGSVSDEEMMELREAFAKVDTDGNGYISCNELNDLFKAACLPLPGYRVREITENLMATGDLD QDGKISFDEFIKVFHGLKSTEVAKTFRKAINKKEGICAIGGTSEQSSVGTQHSYSEEEKYAFVN WINKALENDPDCRHVIPMNPNTDDLFNAVGDGIVLCKMVNLSVPDTIDERTINKKKLTPFTIQE NLNLALNSASAIGCHVVNIGAEDLKEGKPYLVLGLLWQVIKIGLFADIELSRNEALIALLREGE SLEDLMKLSPEELLLRWANYHLENAGCTKITNFSTDIKDSKAYYHLLEQVAPRGDEEGIPAVVI DMSGLREKDDIQRAECMLQQAERLGCRQFVTATDVVRGNPKLNLAFIANLFNKYPALHKPENQD IDWGALEGETREERTFRNWMNSLGVNPGVNHLYSDLSDALVIFQLYEKIKVPVDWNRVNRPPYP KLGGNMKKLENCNYAVDLGKNQAKFSLVGIAGQDLNEGNRTLTLALVWQLMRRYTLNILEDIGG GQKVNDDIIVNWVNTTLKEAQKSSSITSFKDPKISTSLPVLDLIDAIQPGSINYDLLKTENLDD EEKLNNAKYAISMARKIGARVYALPEDLVEVNPKMVMTVFACLMGKGMKRV hide sequence

Ensembl Acc Id:

ENSRNOP00000071263 ⟸ ENSRNOT00000082191

Ensembl Acc Id:

ENSRNOP00000014502 ⟸ ENSRNOT00000014502

Ensembl Acc Id:

ENSRNOP00000083584 ⟸ ENSRNOT00000105314

Ensembl Acc Id:

ENSRNOP00000092952 ⟸ ENSRNOT00000094863

RefSeq Acc Id:	XP_063130386 ⟸ XM_063274316
- Peptide Label:	isoform X1
- UniProtKB:	Q5XI38 (UniProtKB/TrEMBL), A0A8I6AGS0 (UniProtKB/TrEMBL)

Protein Domains

Calponin-homology (CH) EF-hand

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-A0A0G2K014-F1-model_v2	AlphaFold	A0A0G2K014	1-645	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13699829

Promoter ID:

EPDNEW_R10352

Type:

initiation region

Name:

Lcp1_1

Description:

lymphocyte cytosolic protein 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	15	57,221,275 - 57,221,335	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1308288	AgrOrtholog
BioCyc Gene	G2FUF-13137	BioCyc
Ensembl Genes	ENSRNOG00000010319	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000014502	ENTREZGENE
	ENSRNOT00000014502.6	UniProtKB/TrEMBL
	ENSRNOT00000082191	ENTREZGENE
	ENSRNOT00000082191.2	UniProtKB/TrEMBL
	ENSRNOT00000094863.1	UniProtKB/TrEMBL
	ENSRNOT00000105314.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.418.10	UniProtKB/TrEMBL
	EF-hand	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7125327	IMAGE-MGC_LOAD
InterPro	Actinin_actin-bd_CS	UniProtKB/TrEMBL
	Calponin-like_dom_sf	UniProtKB/TrEMBL
	Calponin_act_bd	UniProtKB/TrEMBL
	EF-hand-like_dom	UniProtKB/TrEMBL
	EF_Hand_1_Ca_BS	UniProtKB/TrEMBL
	EF_hand_Ca_bd	UniProtKB/TrEMBL
	Fimbrin/Plastin	UniProtKB/TrEMBL
KEGG Report	rno:306071	UniProtKB/TrEMBL
MGC_CLONE	MGC:95070	IMAGE-MGC_LOAD
NCBI Gene	306071	ENTREZGENE
PANTHER	PLASTIN-2	UniProtKB/TrEMBL
	PTHR19961	UniProtKB/TrEMBL
Pfam	EF_hand_5	UniProtKB/TrEMBL
	PF00307	UniProtKB/TrEMBL
PhenoGen	Lcp1	PhenoGen
PROSITE	ACTININ_1	UniProtKB/TrEMBL
	ACTININ_2	UniProtKB/TrEMBL
	EF_HAND_1	UniProtKB/TrEMBL
	EF_HAND_2	UniProtKB/TrEMBL
	PS50021	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000010319	RatGTEx
SMART	EFh	UniProtKB/TrEMBL
	SM00033	UniProtKB/TrEMBL
Superfamily-SCOP	Calponin-homology	UniProtKB/TrEMBL
	SSF47473	UniProtKB/TrEMBL
UniProt	A0A0G2K014_RAT	UniProtKB/TrEMBL
	A0A8I6AGS0	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6G984_RAT	UniProtKB/TrEMBL
	Q5XI38	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2005-12-06	Lcp1	lymphocyte cytosolic protein 1	Lcp1_predicted	lymphocyte cytosolic protein 1 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Lcp1_predicted	lymphocyte cytosolic protein 1 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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