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actinin binding - Ontology Report - Rat Genome Database

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ONTOLOGY REPORT - ANNOTATIONS

Term:actinin binding
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Accession:GO:0042805 term browser browse the term
Definition:Binding to actinin, any member of a family of proteins that crosslink F-actin.
Synonyms:exact_synonym: capZ binding
 narrow_synonym: beta-actinin binding
 alt_id: GO:0051406

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actinin binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CSRP1 cysteine and glycine rich protein 1 enables IBA GO_Central GO_REF:0000033 NCBI chr 1:201,483,530...201,507,123
Ensembl chr 1:201,483,530...201,509,456 		JBrowse link
G CSRP2 cysteine and glycine rich protein 2 enables IBA GO_Central GO_REF:0000033 NCBI chr12:76,858,709...76,879,019
Ensembl chr12:76,858,709...76,879,023 		JBrowse link
G CSRP3 cysteine and glycine rich protein 3 enables IEA
IBA
ISS 		(PMID:12507422) Ensembl
GO_Central
BHF-UCL		 PMID:12507422 GO_REF:0000033 GO_REF:0000107 NCBI chr11:19,182,030...19,201,983
Ensembl chr11:19,182,030...19,210,571 		JBrowse link
G HNRNPK heterogeneous nuclear ribonucleoprotein K ISO RGD PMID:16518874 RGD:10054427 NCBI chr 9:83,968,083...83,980,615
Ensembl chr 9:83,968,083...83,980,631 		JBrowse link
G LMO7 LIM domain 7 ISO protein C-terminus binding RGD PMID:15140894 RGD:1303994 NCBI chr13:75,620,434...75,859,870
Ensembl chr13:75,620,434...75,859,870 		JBrowse link
G MICALL2 MICAL like 2 enables IEA Ensembl GO_REF:0000107 NCBI chr 7:1,434,359...1,459,470
Ensembl chr 7:1,428,465...1,459,470 		JBrowse link
G MYOZ1 myozenin 1 enables IMP
EXP
IPI 		(PMID:34049882) DisProt PMID:34049882 NCBI chr10:73,631,612...73,641,474
Ensembl chr10:73,631,612...73,641,474 		JBrowse link
G NFKB1 nuclear factor kappa B subunit 1 enables IPI (PMID:25411248) UniProt PMID:25411248 NCBI chr 4:102,501,359...102,617,302
Ensembl chr 4:102,501,330...102,617,302 		JBrowse link
G PDLIM3 PDZ and LIM domain 3 ISO RGD PMID:9334352 RGD:634540 NCBI chr 4:185,500,660...185,535,507
Ensembl chr 4:185,500,660...185,535,507 		JBrowse link
G PDLIM4 PDZ and LIM domain 4 ISO RGD PMID:14729062 RGD:1300470 NCBI chr 5:132,257,696...132,273,454
Ensembl chr 5:132,257,696...132,273,454 		JBrowse link
G PDLIM5 PDZ and LIM domain 5 enables ISS UniProt GO_REF:0000024 NCBI chr 4:94,451,942...94,668,223
Ensembl chr 4:94,451,857...94,668,227 		JBrowse link
G PKD2 polycystin 2, transient receptor potential cation channel enables IDA (PMID:15843396) BHF-UCL PMID:15843396 NCBI chr 4:88,007,635...88,077,777
Ensembl chr 4:88,007,635...88,077,777 		JBrowse link
G PROM1 prominin 1 enables IDA (PMID:18654668) BHF-UCL PMID:18654668 NCBI chr 4:15,968,228...16,084,023
Ensembl chr 4:15,963,076...16,084,378 		JBrowse link
G RELA RELA proto-oncogene, NF-kB subunit enables IEA
IPI 		(PMID:25411248) Ensembl
UniProt		 PMID:25411248 GO_REF:0000107 NCBI chr11:65,653,601...65,663,857
Ensembl chr11:65,653,599...65,663,090 		JBrowse link
G TRPC5 transient receptor potential cation channel subfamily C member 5 enables ISO
IEA 		RGD
Ensembl		 PMID:16025302 GO_REF:0000107 RGD:10043786 NCBI chr  X:111,768,011...112,082,776
Ensembl chr  X:111,768,011...112,082,776 		JBrowse link
G TRPC6 transient receptor potential cation channel subfamily C member 6 enables ISO
IEA 		RGD
Ensembl		 PMID:16025302 GO_REF:0000107 RGD:10043786 NCBI chr11:101,451,564...101,584,007
Ensembl chr11:101,451,564...101,872,562 		JBrowse link
G TTN titin enables IDA
IPI 		(PMID:9501083)
(PMID:11846417) 		BHF-UCL PMID:9501083 PMID:11846417 NCBI chr 2:178,525,989...178,807,423
Ensembl chr 2:178,525,989...178,830,802 		JBrowse link
alpha-actinin binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADORA2A adenosine A2a receptor enables ISO
IEA 		in primary rat striatal neurons RGD
Ensembl		 PMID:12837758 GO_REF:0000107 RGD:1304399 NCBI chr22:24,423,597...24,442,357
Ensembl chr22:24,417,879...24,442,357 		JBrowse link
G ALMS1 ALMS1 centrosome and basal body associated protein enables ISO (PMID:22693585) MGI PMID:22693585 NCBI chr 2:73,385,758...73,609,919
Ensembl chr 2:73,385,758...73,625,166 		JBrowse link
G CACNA1C calcium voltage-gated channel subunit alpha1 C enables IPI (PMID:17110593) BHF-UCL PMID:17110593 NCBI chr12:1,970,780...2,697,950
Ensembl chr12:1,970,772...2,697,950 		JBrowse link
G CACNA1D calcium voltage-gated channel subunit alpha1 D enables IPI (PMID:17110593) BHF-UCL PMID:17110593 NCBI chr 3:53,494,611...53,813,733
Ensembl chr 3:53,328,963...53,813,733 		JBrowse link
G DAG1 dystroglycan 1 enables IDA (PMID:18341635) UniProt PMID:18341635 NCBI chr 3:49,468,948...49,535,615
Ensembl chr 3:49,468,713...49,535,618 		JBrowse link
G ITGB1 integrin subunit beta 1 ISO RGD PMID:16935300 RGD:2325674 NCBI chr10:32,900,318...32,958,230
Ensembl chr10:32,887,273...33,005,792 		JBrowse link
G KCNA5 potassium voltage-gated channel subfamily A member 5 enables IPI (PMID:10812072) BHF-UCL PMID:10812072 NCBI chr12:5,043,879...5,046,788
Ensembl chr12:5,043,879...5,046,788 		JBrowse link
G KCNN2 potassium calcium-activated channel subfamily N member 2 enables IPI (PMID:17110593) BHF-UCL PMID:17110593 NCBI chr 5:114,055,978...114,496,496
Ensembl chr 5:114,055,926...114,496,500 		JBrowse link
G LRRC10 leucine rich repeat containing 10 enables IEA Ensembl GO_REF:0000107 NCBI chr12:69,608,564...69,610,907
Ensembl chr12:69,608,564...69,610,907 		JBrowse link
G MAGI1 membrane associated guanylate kinase, WW and PDZ domain containing 1 enables IPI (PMID:16464232) UniProt PMID:16464232 NCBI chr 3:65,353,526...66,038,918
Ensembl chr 3:65,353,525...66,038,918 		JBrowse link
G MYOT myotilin enables IDA (PMID:10958653) MGI PMID:10958653 NCBI chr 5:137,867,860...137,887,851
Ensembl chr 5:137,867,858...137,887,851 		JBrowse link
G NPHS1 NPHS1 adhesion molecule, nephrin ISO RGD PMID:15331416 RGD:1600864 NCBI chr19:35,862,915...35,869,357
Ensembl chr19:35,825,964...35,869,287 		JBrowse link
G PDLIM2 PDZ and LIM domain 2 ISO RGD PMID:15505042 RGD:1359754 NCBI chr 8:22,578,741...22,598,026
Ensembl chr 8:22,578,279...22,598,025 		JBrowse link
G PDLIM4 PDZ and LIM domain 4 enables IPI (PMID:20120020) UniProt PMID:20120020 NCBI chr 5:132,257,696...132,273,454
Ensembl chr 5:132,257,696...132,273,454 		JBrowse link
G PKD2 polycystin 2, transient receptor potential cation channel ISO RGD PMID:15843396 RGD:7175289 NCBI chr 4:88,007,635...88,077,777
Ensembl chr 4:88,007,635...88,077,777 		JBrowse link
G PKD2L1 polycystin 2 like 1, transient receptor potential cation channel enables IPI (PMID:17944866) BHF-UCL PMID:17944866 NCBI chr10:100,288,149...100,330,228
Ensembl chr10:100,288,149...100,330,264 		JBrowse link
G PPARG peroxisome proliferator activated receptor gamma enables IPI (PMID:22351778) UniProt PMID:22351778 NCBI chr 3:12,287,368...12,434,344
Ensembl chr 3:12,287,368...12,434,356 		JBrowse link
G PTPRT protein tyrosine phosphatase receptor type T enables IEA Ensembl GO_REF:0000107 NCBI chr20:42,031,890...43,189,906
Ensembl chr20:42,072,752...43,189,970 		JBrowse link
G RARA retinoic acid receptor alpha enables IPI (PMID:22351778) UniProt PMID:22351778 NCBI chr17:40,309,180...40,357,643
Ensembl chr17:40,309,180...40,357,643 		JBrowse link
G SYNPO2 synaptopodin 2 enables IDA (PMID:20554076) UniProt PMID:20554076 NCBI chr 4:118,850,681...119,061,247
Ensembl chr 4:118,850,688...119,061,247 		JBrowse link
G XIRP2 xin actin binding repeat containing 2 enables IEA Ensembl GO_REF:0000107 NCBI chr 2:166,888,480...167,259,753
Ensembl chr 2:166,888,480...167,259,753 		JBrowse link
muscle alpha-actinin binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LDB3 LIM domain binding 3 enables IEA
IBA 		Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr10:86,666,788...86,736,072
Ensembl chr10:86,666,785...86,736,072 		JBrowse link
G MYPN myopalladin enables IPI (PMID:11309420) BHF-UCL PMID:11309420 NCBI chr10:68,087,897...68,212,017
Ensembl chr10:68,087,897...68,212,017 		JBrowse link
G NRAP nebulin related anchoring protein enables IEA
ISS 		Ensembl
UniProt		 GO_REF:0000024 GO_REF:0000107 NCBI chr10:113,588,714...113,664,041
Ensembl chr10:113,588,714...113,664,070 		JBrowse link
G PALLD palladin, cytoskeletal associated protein enables TAS (PMID:16125169) HGNC-UCL PMID:16125169 NCBI chr 4:168,497,052...168,928,441
Ensembl chr 4:168,497,052...168,928,457 		JBrowse link
G PDLIM1 PDZ and LIM domain 1 enables IBA GO_Central GO_REF:0000033 NCBI chr10:95,237,572...95,291,003
Ensembl chr10:95,237,572...95,291,012 		JBrowse link
G PDLIM2 PDZ and LIM domain 2 enables ISO
IBA 		RGD
GO_Central		 PMID:15505042 GO_REF:0000033 RGD:1359754 NCBI chr 8:22,578,741...22,598,026
Ensembl chr 8:22,578,279...22,598,025 		JBrowse link
G PDLIM3 PDZ and LIM domain 3 enables IBA GO_Central GO_REF:0000033 NCBI chr 4:185,500,660...185,535,507
Ensembl chr 4:185,500,660...185,535,507 		JBrowse link
G PDLIM4 PDZ and LIM domain 4 enables IBA GO_Central GO_REF:0000033 NCBI chr 5:132,257,696...132,273,454
Ensembl chr 5:132,257,696...132,273,454 		JBrowse link
G PDLIM5 PDZ and LIM domain 5 enables IBA GO_Central GO_REF:0000033 NCBI chr 4:94,451,942...94,668,223
Ensembl chr 4:94,451,857...94,668,227 		JBrowse link
G PDLIM7 PDZ and LIM domain 7 enables IBA GO_Central GO_REF:0000033 NCBI chr 5:177,483,394...177,497,604
Ensembl chr 5:177,483,394...177,497,606 		JBrowse link
G PKD2 polycystin 2, transient receptor potential cation channel enables ISO
IBA 		RGD
GO_Central		 PMID:15843396 GO_REF:0000033 RGD:7175289 NCBI chr 4:88,007,635...88,077,777
Ensembl chr 4:88,007,635...88,077,777 		JBrowse link
G PKD2L1 polycystin 2 like 1, transient receptor potential cation channel enables IPI
IBA 		(PMID:17944866) BHF-UCL
GO_Central		 PMID:17944866 GO_REF:0000033 NCBI chr10:100,288,149...100,330,228
Ensembl chr10:100,288,149...100,330,264 		JBrowse link
G PRICKLE4 prickle planar cell polarity protein 4 enables IBA GO_Central GO_REF:0000033 NCBI chr 6:41,780,782...41,787,452
Ensembl chr 6:41,780,782...41,787,452 		JBrowse link
G SYNPO2 synaptopodin 2 enables ISS UniProt GO_REF:0000024 NCBI chr 4:118,850,681...119,061,247
Ensembl chr 4:118,850,688...119,061,247 		JBrowse link
G TTN titin enables IPI (PMID:9501083) BHF-UCL PMID:9501083 NCBI chr 2:178,525,989...178,807,423
Ensembl chr 2:178,525,989...178,830,802 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  molecular_function 19689
    binding 18166
      protein binding 15655
        cytoskeletal protein binding 1073
          actinin binding 43
            alpha-actinin binding + 31
paths to the root