MYOT (myotilin) - Rat Genome Database

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Gene: MYOT (myotilin) Homo sapiens
Analyze
Symbol: MYOT
Name: myotilin
RGD ID: 1321551
HGNC Page HGNC:12399
Description: Enables alpha-actinin binding activity. Predicted to be involved in homophilic cell adhesion via plasma membrane adhesion molecules and synapse organization. Located in Z disc. Implicated in muscular dystrophy and myofibrillar myopathy 3.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: 57 kDa cytoskeletal protein; LGMD1; LGMD1A; limb-girdle muscular dystrophy 1A (autosomal dominant); MFM3; myofibrillar titin-like Ig domains protein; titin immunoglobulin domain protein (myotilin); TTID; TTOD
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385137,867,860 - 137,887,851 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5137,867,858 - 137,887,851 (+)EnsemblGRCh38hg38GRCh38
GRCh375137,203,549 - 137,223,540 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365137,231,473 - 137,251,440 (+)NCBINCBI36Build 36hg18NCBI36
Build 345137,231,472 - 137,251,440NCBI
Celera5133,325,839 - 133,345,837 (+)NCBICelera
Cytogenetic Map5q31.2NCBI
HuRef5132,395,358 - 132,415,358 (+)NCBIHuRef
CHM1_15136,636,150 - 136,656,170 (+)NCBICHM1_1
T2T-CHM13v2.05138,394,286 - 138,414,287 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
MYOTHumanmuscular dystrophy  IAGP 1599673Limb-Girdle Muscular Dystrophy LGMD1A and OMIM:159000RGD 
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Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
MYOTHumanautosomal dominant intellectual developmental disorder 31  IAGP (Homo sapiens) and (Homo sapiens)8554872ClinVar Annotator: match by term: NEURODEVELOPMENTAL DISORDER WITH NEONATAL RESPIRATORY INSUFFICIENCY more ...ClinVarPMID:28492532
MYOTHumancardiomyopathy  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: CardiomyopathyClinVarPMID:25741868 more ...
MYOTHumancongestive heart failure  IAGP (Homo sapiens) and (Homo sapiens)8554872ClinVar Annotator: match by term: Heart failureClinVarPMID:25741868 and PMID:28492532
MYOTHumancongestive heart failure  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Heart failureClinVarPMID:19240791 more ...
MYOTHumanfamilial adenomatous polyposis 1  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Familial adenomatous polyposis 1ClinVarPMID:17963004 more ...
MYOTHumangenetic disease  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:25741868 more ...
MYOTHumangenetic disease  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:26467025 and PMID:28492532
MYOTHumangenetic disease  IAGP (Homo sapiens) more ...8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:25741868 and PMID:28492532
MYOTHumangenetic disease  IAGP (Homo sapiens) more ...8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVar 
MYOTHumangenetic disease  IAGP (Homo sapiens) more ...8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:28492532
MYOTHumanHereditary Neoplastic Syndromes  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Hereditary cancer-predisposing syndromeClinVarPMID:17963004 more ...
MYOTHumanlimb-girdle muscular dystrophy  IAGP (Homo sapiens) more ...8554872ClinVar Annotator: match by term: Limb-Girdle Muscular Dystrophy and DominantClinVarPMID:28492532
MYOTHumanlimb-girdle muscular dystrophy  IAGP (Homo sapiens) more ...8554872ClinVar Annotator: match by term: Limb-Girdle Muscular Dystrophy and DominantClinVarPMID:25741868 more ...
MYOTHumanlimb-girdle muscular dystrophy  IAGP (Homo sapiens) more ...8554872ClinVar Annotator: match by term: Limb-Girdle Muscular Dystrophy and DominantClinVar 
MYOTHumanlimb-girdle muscular dystrophy  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Limb-Girdle Muscular Dystrophy and DominantClinVarPMID:26467025 and PMID:28492532
MYOTHumanlimb-girdle muscular dystrophy  IAGP (Homo sapiens) more ...8554872ClinVar Annotator: match by term: Limb-Girdle Muscular Dystrophy and DominantClinVarPMID:25741868 and PMID:28492532
MYOTHumanMuscle Weakness  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Muscle weaknessClinVar 
MYOTHumanmyofibrillar myopathy  IAGP (Homo sapiens) more ...8554872ClinVar Annotator: match by term: Myofibrillar Myopathy and DominantClinVarPMID:28492532
MYOTHumanmyofibrillar myopathy  IAGP (Homo sapiens) more ...8554872ClinVar Annotator: match by term: Myofibrillar Myopathy and DominantClinVarPMID:25741868 and PMID:28492532
MYOTHumanmyofibrillar myopathy  IAGP (Homo sapiens) and (Homo sapiens)8554872ClinVar Annotator: match by term: Myofibrillar Myopathy and DominantClinVarPMID:25741868 more ...
1 to 20 of 52 rows
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
MYOTHumanatrial fibrillation  EXP 11554173CTD Direct Evidence: marker/mechanismCTDPMID:30061737
MYOTHumancardiomyopathy  EXP 11554173CTD Direct Evidence: marker/mechanismCTDPMID:15111675
MYOTHumanlimb-girdle muscular dystrophy  EXP 11554173CTD Direct Evidence: marker/mechanismCTDPMID:21336781
MYOTHumanMuscle Weakness  EXP 11554173CTD Direct Evidence: marker/mechanismCTDPMID:15111675
MYOTHumanmyofibrillar myopathy 3  EXP 11554173CTD Direct Evidence: marker/mechanismCTDPMID:15111675
MYOTHumanperipheral nervous system disease  EXP 11554173CTD Direct Evidence: marker/mechanismCTDPMID:15111675
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
MYOTHumanmyofibrillar myopathy 3  IAGP 7240710 OMIM 

1 to 20 of 44 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
MYOTHuman17beta-estradiol multiple interactionsEXP 6480464[Estradiol binds to ESR2 protein] which results in increased expression of MYOT mRNACTDPMID:20404318
MYOTHuman17beta-estradiol decreases expressionISOMyot (Mus musculus)6480464Estradiol results in decreased expression of MYOT mRNACTDPMID:19484750
MYOTHuman2,3,7,8-tetrachlorodibenzodioxine affects expressionISOMyot (Mus musculus)6480464Tetrachlorodibenzodioxin affects the expression of MYOT mRNACTDPMID:21570461
MYOTHuman4,4'-sulfonyldiphenol decreases expressionISOMyot (Mus musculus)6480464bisphenol S results in decreased expression of MYOT mRNACTDPMID:30951980
MYOTHuman6-propyl-2-thiouracil multiple interactionsISOMyot (Mus musculus)6480464[Propylthiouracil co-treated with Iodine deficiency] results in increased expression of MYOT mRNACTDPMID:36706583
MYOTHumanacrylamide decreases expressionISOMyot (Rattus norvegicus)6480464Acrylamide results in decreased expression of MYOT mRNACTDPMID:28959563
MYOTHumanaflatoxin B1 decreases methylationEXP 6480464Aflatoxin B1 results in decreased methylation of MYOT geneCTDPMID:27153756
MYOTHumanaflatoxin B1 decreases expressionEXP 6480464Aflatoxin B1 results in decreased expression of MYOT mRNACTDPMID:32234424
MYOTHumanbenzo[a]pyrene increases expressionEXP 6480464Benzo(a)pyrene results in increased expression of MYOT mRNACTDPMID:22316170
MYOTHumanbenzo[a]pyrene increases methylationISOMyot (Mus musculus)6480464Benzo(a)pyrene results in increased methylation of MYOT exon and Benzo(a)pyrene results in increased methylation of MYOT intronCTDPMID:27901495
MYOTHumanbenzo[a]pyrene affects methylationEXP 6480464Benzo(a)pyrene affects the methylation of MYOT promoterCTDPMID:27901495
MYOTHumanbis(2-ethylhexyl) phthalate increases expressionISOMyot (Mus musculus)6480464Diethylhexyl Phthalate results in increased expression of MYOT mRNACTDPMID:28085963
MYOTHumanbisphenol A decreases expressionISOMyot (Rattus norvegicus)6480464bisphenol A results in decreased expression of MYOT mRNACTDPMID:25181051 and PMID:27178563
MYOTHumanbisphenol A increases methylationISOMyot (Rattus norvegicus)6480464bisphenol A results in increased methylation of MYOT geneCTDPMID:28505145
MYOTHumanbisphenol F decreases expressionISOMyot (Mus musculus)6480464bisphenol F results in decreased expression of MYOT mRNACTDPMID:30951980
MYOTHumanbutanal increases expressionEXP 6480464butyraldehyde results in increased expression of MYOT mRNACTDPMID:26079696
MYOTHumanCGP 52608 multiple interactionsEXP 6480464CGP 52608 promotes the reaction [RORA protein binds to MYOT gene]CTDPMID:28238834
MYOTHumandibutyl phthalate decreases expressionISOMyot (Rattus norvegicus)6480464Dibutyl Phthalate results in decreased expression of MYOT mRNACTDPMID:21266533
MYOTHumandiiodine multiple interactionsISOMyot (Mus musculus)6480464[Propylthiouracil co-treated with Iodine deficiency] results in increased expression of MYOT mRNACTDPMID:36706583
MYOTHumandimethylarsinic acid multiple interactionsISOMyot (Mus musculus)6480464[sodium arsenate co-treated with sodium arsenite co-treated with monomethylarsonic acid co-treated with Cacodylic Acid] results in decreased expression of MYOT mRNACTDPMID:34876320

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Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
MYOTHumanaxon guidance involved_inIEAGO:0008046150520179 GOCGO_REF:0000108
MYOTHumanhomophilic cell adhesion via plasma membrane adhesion molecules involved_inIBAFB:FBgn0017590 more ...150520179 GO_CentralGO_REF:0000033
MYOTHumanmuscle contraction involved_inTAS 150520179 PMID:10958653PINCPMID:10958653
MYOTHumansynapse organization involved_inIBAMGI:96721 more ...150520179 GO_CentralGO_REF:0000033

Cellular Component
1 to 14 of 14 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
MYOTHumanactin cytoskeleton located_inTAS 150520179 PMID:10369880PINCPMID:10369880
MYOTHumanaxon is_active_inIBAMGI:96721 more ...150520179 GO_CentralGO_REF:0000033
MYOTHumancytoplasm located_inIEAUniProtKB-KW:KW-0963150520179 UniProtGO_REF:0000043
MYOTHumancytoskeleton located_inIEAUniProtKB-KW:KW-0206150520179 UniProtGO_REF:0000043
MYOTHumancytoskeleton located_inIEAUniProtKB-SubCell:SL-0090150520179 UniProtGO_REF:0000044
MYOTHumanmembrane located_inIEAUniProtKB-KW:KW-0472150520179 UniProtGO_REF:0000043
MYOTHumanneuronal cell body is_active_inIBAPANTHER:PTN002895063 more ...150520179 GO_CentralGO_REF:0000033
MYOTHumanplasma membrane is_active_inIBAMGI:96721 more ...150520179 GO_CentralGO_REF:0000033
MYOTHumanplasma membrane located_inIEAUniProtKB-KW:KW-1003150520179 UniProtGO_REF:0000043
MYOTHumansarcolemma located_inIEAUniProtKB-SubCell:SL-0238150520179 UniProtGO_REF:0000044
MYOTHumanZ disc part_ofIMP 150520179 PMID:10958653CACAOPMID:10958653
MYOTHumanZ disc located_inIEAUniProtKB:Q9JIF9 and ensembl:ENSMUSP00000025349150520179 EnsemblGO_REF:0000107
MYOTHumanZ disc located_inIDA 150520179 PMID:10958653MGIPMID:10958653
MYOTHumanZ disc located_inIEAUniProtKB-SubCell:SL-0314150520179 UniProtGO_REF:0000044
1 to 14 of 14 rows

1 to 20 of 58 rows
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
MYOTHumanAbnormal muscle fiber myotilin  IAGP 8699517 HPOORPHA:98911
MYOTHumanAbnormal respiratory system physiology  IAGP 8699517 HPOORPHA:266
MYOTHumanAchilles tendon contracture  IAGP 8699517 HPOMIM:609200
MYOTHumanAdult onset  IAGP 8699517 HPOMIM:609200
MYOTHumanAreflexia  IAGP 8699517 HPOMIM:609200
MYOTHumanAutophagic vacuoles  IAGP 8699517 HPOORPHA:266
MYOTHumanAutosomal dominant inheritance  IAGP 8699517 HPOMIM:609200
MYOTHumanCardiomyopathy  IAGP 8699517 HPOORPHA:98911
MYOTHumanCardiomyopathy  IAGP 8699517 HPOMIM:609200
MYOTHumanCentrally nucleated skeletal muscle fibers  IAGP 8699517 HPOMIM:609200
MYOTHumanDifficulty climbing stairs  IAGP 8699517 HPOORPHA:266
MYOTHumanDifficulty standing  IAGP 8699517 HPOORPHA:266
MYOTHumanDistal amyotrophy  IAGP 8699517 HPOORPHA:98911
MYOTHumanDistal amyotrophy  IAGP 8699517 HPOMIM:609200
MYOTHumanDistal muscle weakness  IAGP 8699517 HPOORPHA:266
MYOTHumanDysarthria  IAGP 8699517 HPOORPHA:98911
MYOTHumanDysphagia  IAGP 8699517 HPOORPHA:266
MYOTHumanElevated circulating creatine kinase concentration  IAGP 8699517 HPOORPHA:266
MYOTHumanElevated circulating creatine kinase concentration  IAGP 8699517 HPOORPHA:98911
MYOTHumanElevated circulating creatine kinase concentration  IAGP 8699517 HPOMIM:609200
1 to 20 of 58 rows
1 to 17 of 17 rows
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
MYOTHumanCardiomyopathy  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: CardiomyopathyClinVarPMID:25741868 more ...
MYOTHumanCongestive heart failure  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Heart failureClinVarPMID:25741868 and PMID:28492532
MYOTHumanCongestive heart failure  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Heart failureClinVarPMID:19240791 more ...
MYOTHumanCongestive heart failure  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Heart failureClinVarPMID:25741868 and PMID:28492532
MYOTHumanDistal amyotrophy  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Distal amyotrophyClinVarPMID:12428213 more ...
MYOTHumanDistal lower limb muscle weakness  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Distal lower limb muscle weaknessClinVarPMID:12428213 more ...
MYOTHumanEMG: myopathic abnormalities  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: EMG: myopathic abnormalitiesClinVarPMID:12428213 more ...
MYOTHumanFatty replacement of skeletal muscle  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Fatty replacement of skeletal muscleClinVarPMID:12428213 more ...
MYOTHumanFoot dorsiflexor weakness  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Foot dorsiflexor weaknessClinVarPMID:12428213 more ...
MYOTHumanLower limb pain  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Lower limb painClinVarPMID:12428213 more ...
MYOTHumanMuscle fiber inclusion bodies  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Muscle fiber inclusion bodiesClinVarPMID:12428213 more ...
MYOTHumanMuscle weakness  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Muscle weaknessClinVar 
MYOTHumanMyofibrillar myopathy  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Myofibrillar myopathyClinVarPMID:15111675 more ...
MYOTHumanProgressive distal muscle weakness  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Progressive distal muscle weaknessClinVarPMID:12428213 more ...
MYOTHumanProgressive proximal muscle weakness  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Progressive proximal muscle weaknessClinVarPMID:12428213 more ...
MYOTHumanProstate cancer  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Prostatic cancerClinVarPMID:23265383
MYOTHumanUrinary bladder sphincter dysfunction  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Urinary bladder sphincter dysfunctionClinVarPMID:12428213 more ...
1 to 17 of 17 rows

#
Reference Title
Reference Citation
1. Myotilin is mutated in limb girdle muscular dystrophy 1A. Hauser MA, etal., Hum Mol Genet. 2000 Sep 1;9(14):2141-7.
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. RGD HPO Phenotype Annotation Pipeline RGD automated import pipeline for human HPO-to-gene-to-disease annotations
PMID:1598902   PMID:1676560   PMID:9828127   PMID:10369880   PMID:10486214   PMID:11038172   PMID:12428213   PMID:12477932   PMID:12499399   PMID:12809483   PMID:15111675   PMID:15489334  
PMID:15967462   PMID:16076904   PMID:16122733   PMID:16344560   PMID:16380616   PMID:16674563   PMID:16793270   PMID:16801328   PMID:17698502   PMID:18157088   PMID:19027924   PMID:19047374  
PMID:19151983   PMID:19418025   PMID:19458539   PMID:19913121   PMID:20301582   PMID:20301672   PMID:20628086   PMID:21244100   PMID:21361873   PMID:21832049   PMID:21873635   PMID:21988832  
PMID:23284306   PMID:23414517   PMID:23583979   PMID:24928145   PMID:25416956   PMID:26871637   PMID:27107014   PMID:27854214   PMID:28638118   PMID:29872149   PMID:32296183   PMID:36776921  
PMID:37511242   PMID:37553249  



MYOT
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385137,867,860 - 137,887,851 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5137,867,858 - 137,887,851 (+)EnsemblGRCh38hg38GRCh38
GRCh375137,203,549 - 137,223,540 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365137,231,473 - 137,251,440 (+)NCBINCBI36Build 36hg18NCBI36
Build 345137,231,472 - 137,251,440NCBI
Celera5133,325,839 - 133,345,837 (+)NCBICelera
Cytogenetic Map5q31.2NCBI
HuRef5132,395,358 - 132,415,358 (+)NCBIHuRef
CHM1_15136,636,150 - 136,656,170 (+)NCBICHM1_1
T2T-CHM13v2.05138,394,286 - 138,414,287 (+)NCBIT2T-CHM13v2.0
Myot
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391844,467,126 - 44,488,795 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1844,467,141 - 44,488,791 (+)EnsemblGRCm39 Ensembl
GRCm381844,334,053 - 44,355,740 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1844,334,074 - 44,355,724 (+)EnsemblGRCm38mm10GRCm38
MGSCv371844,493,728 - 44,515,376 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361844,459,405 - 44,481,053 (+)NCBIMGSCv36mm8
Celera1845,713,780 - 45,735,414 (+)NCBICelera
Cytogenetic Map18B3NCBI
cM Map1823.74NCBI
Myot
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81836,956,119 - 36,975,728 (+)NCBIGRCr8
mRatBN7.21836,705,244 - 36,724,849 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1836,705,314 - 36,724,841 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1836,809,300 - 36,828,821 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01837,527,651 - 37,547,177 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01836,904,570 - 36,924,088 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01835,573,978 - 35,593,541 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1835,574,002 - 35,593,541 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl937,727,942 - 37,747,514 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01835,239,617 - 35,259,164 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41838,004,000 - 38,023,531 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Cytogenetic Map18q11NCBI
Myot
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540832,790,095 - 32,838,258 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540832,816,133 - 32,835,230 (+)NCBIChiLan1.0ChiLan1.0
MYOT
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24133,143,300 - 133,170,336 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15131,282,853 - 131,309,897 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05133,254,644 - 133,274,615 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15139,386,101 - 139,411,960 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5139,386,101 - 139,411,960 (+)Ensemblpanpan1.1panPan2
MYOT
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11125,574,087 - 25,592,767 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1125,564,136 - 25,592,339 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1124,338,045 - 24,356,731 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01126,424,036 - 26,442,735 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1126,424,113 - 26,442,730 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11125,131,713 - 25,150,406 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01124,955,437 - 24,974,114 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01125,618,123 - 25,636,808 (+)NCBIUU_Cfam_GSD_1.0
Myot
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213125,805,178 - 125,822,515 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365974,830,027 - 4,847,421 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365974,830,111 - 4,847,409 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MYOT
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2139,861,004 - 139,919,089 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12139,899,245 - 139,919,095 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22145,621,343 - 145,642,087 (+)NCBISscrofa10.2Sscrofa10.2susScr3
MYOT
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12340,542,153 - 40,567,873 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2340,548,100 - 40,568,217 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603437,323,439 - 37,340,122 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Myot
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247339,130,399 - 9,160,908 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247339,131,051 - 9,160,813 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in MYOT
415 total Variants

1 to 10 of 478 rows
Name
Type
Condition(s)
Position(s)
Clinical significance
NM_006790.3(MYOT):c.98G>T (p.Ser33Ile) single nucleotide variant Myofibrillar myopathy 3 [RCV000526830] Chr5:137870749 [GRCh38]
Chr5:137206438 [GRCh37]
Chr5:5q31.2
uncertain significance
NM_006790.3(MYOT):c.17G>A (p.Arg6His) single nucleotide variant Myofibrillar myopathy 3 [RCV000023360]|not provided [RCV001588824] Chr5:137870668 [GRCh38]
Chr5:137206357 [GRCh37]
Chr5:5q31.2
pathogenic|likely pathogenic|conflicting interpretations of pathogenicity|uncertain significance
NM_006790.3(MYOT):c.170C>T (p.Thr57Ile) single nucleotide variant Myofibrillar myopathy 3 [RCV000639976]|not provided [RCV000424803] Chr5:137870821 [GRCh38]
Chr5:137206510 [GRCh37]
Chr5:5q31.2
pathogenic
NM_006790.3(MYOT):c.164C>T (p.Ser55Phe) single nucleotide variant Myofibrillar myopathy 3 [RCV000794536]|Progressive distal muscle weakness [RCV000414759]|Urinary bladder sphincter dysfunction [RCV000626902]|not provided [RCV001091589] Chr5:137870815 [GRCh38]
Chr5:137206504 [GRCh37]
Chr5:5q31.2
pathogenic|likely pathogenic
NM_006790.3(MYOT):c.179C>G (p.Ser60Cys) single nucleotide variant Myofibrillar myopathy 3 [RCV000006193]|Myofibrillar myopathy [RCV000239643]|not provided [RCV000725007] Chr5:137870830 [GRCh38]
Chr5:137206519 [GRCh37]
Chr5:5q31.2
pathogenic
NM_006790.3(MYOT):c.179C>T (p.Ser60Phe) single nucleotide variant MYOT-related disorder [RCV003415664]|Myofibrillar myopathy 3 [RCV000006194]|not provided [RCV000725464] Chr5:137870830 [GRCh38]
Chr5:137206519 [GRCh37]
Chr5:5q31.2
pathogenic|likely pathogenic
NM_006790.3(MYOT):c.284G>T (p.Ser95Ile) single nucleotide variant Myofibrillar myopathy 3 [RCV000006195] Chr5:137870935 [GRCh38]
Chr5:137206624 [GRCh37]
Chr5:5q31.2
pathogenic
NM_006790.3(MYOT):c.116C>T (p.Ser39Phe) single nucleotide variant Myofibrillar myopathy 3 [RCV002512824]|not provided [RCV000516381] Chr5:137870767 [GRCh38]
Chr5:137206456 [GRCh37]
Chr5:5q31.2
pathogenic|likely pathogenic
NM_006790.3(MYOT):c.372del (p.Ala125fs) deletion Myofibrillar myopathy 3 [RCV000543818]|not provided [RCV004691873] Chr5:137875844 [GRCh38]
Chr5:137211533 [GRCh37]
Chr5:5q31.2
uncertain significance
NM_006790.3(MYOT):c.808G>C (p.Asp270His) single nucleotide variant Myofibrillar myopathy 3 [RCV002536430]|not provided [RCV000729505] Chr5:137882097 [GRCh38]
Chr5:137217786 [GRCh37]
Chr5:5q31.2
uncertain significance
1 to 10 of 478 rows

Predicted Target Of
Summary Value
Count of predictions:578
Count of miRNA genes:321
Interacting mature miRNAs:334
Transcripts:ENST00000239926, ENST00000421631, ENST00000503748, ENST00000508938, ENST00000509812, ENST00000511254, ENST00000511625, ENST00000515645
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1357314AASTH54_HAllergic/atopic asthma related QTL 54 (human)3.560.0003Reversible airflow obstructiontotal serum IgE5135892246150155845Human

SGC34636  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37178,108,059 - 8,108,183UniSTSGRCh37
GRCh375137,222,217 - 137,222,343UniSTSGRCh37
Build 365137,250,116 - 137,250,242RGDNCBI36
Celera5133,344,514 - 133,344,640RGD
Celera178,136,511 - 8,136,635UniSTS
Cytogenetic Map5q31UniSTS
Cytogenetic Map17p13.1UniSTS
HuRef5132,414,035 - 132,414,161UniSTS
HuRef178,003,843 - 8,003,967UniSTS
GeneMap99-GB4 RH Map1753.9UniSTS
Whitehead-RH Map1780.0UniSTS
RH92475  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh375137,218,581 - 137,218,736UniSTSGRCh37
Build 365137,246,480 - 137,246,635RGDNCBI36
Celera5133,340,878 - 133,341,033RGD
Cytogenetic Map5q31UniSTS
HuRef5132,410,399 - 132,410,554UniSTS
GeneMap99-GB4 RH Map5524.46UniSTS
RH103150  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh375137,223,267 - 137,223,456UniSTSGRCh37
Build 365137,251,166 - 137,251,355RGDNCBI36
Celera5133,345,564 - 133,345,753RGD
Cytogenetic Map5q31UniSTS
HuRef5132,415,085 - 132,415,274UniSTS
GeneMap99-GB4 RH Map5524.56UniSTS
D5S1563E  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh375137,222,603 - 137,222,936UniSTSGRCh37
Build 365137,250,502 - 137,250,835RGDNCBI36
Celera5133,344,900 - 133,345,233RGD
Cytogenetic Map5q31UniSTS
HuRef5132,414,421 - 132,414,754UniSTS
D5S1579E  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh375137,217,729 - 137,219,109UniSTSGRCh37
Build 365137,245,628 - 137,247,008RGDNCBI36
Celera5133,340,026 - 133,341,406RGD
Cytogenetic Map5q31UniSTS
HuRef5132,409,547 - 132,410,927UniSTS
RH47863  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh375137,212,568 - 137,212,712UniSTSGRCh37
Build 365137,240,467 - 137,240,611RGDNCBI36
Celera5133,334,864 - 133,335,008RGD
Cytogenetic Map5q31UniSTS
HuRef5132,404,386 - 132,404,530UniSTS
GeneMap99-GB4 RH Map5524.56UniSTS
TTID_3933  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh375137,222,956 - 137,223,687UniSTSGRCh37
Build 365137,250,855 - 137,251,586RGDNCBI36
Celera5133,345,253 - 133,345,984RGD
HuRef5132,414,774 - 132,415,505UniSTS
RH67872  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh375137,223,250 - 137,223,508UniSTSGRCh37
Build 365137,251,149 - 137,251,407RGDNCBI36
Celera5133,345,547 - 133,345,805RGD
Cytogenetic Map5q31UniSTS
HuRef5132,415,068 - 132,415,326UniSTS
GeneMap99-GB4 RH Map5522.43UniSTS




adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
pharyngeal arch
renal system
reproductive system
respiratory system
sensory system
visual system
1204 2312 2788 2250 4886 1603 2092 3 531 1762 367 2232 6868 6261 17 3674 1 805 1661 1460 173 1


1 to 24 of 24 rows
RefSeq Transcripts NG_008894 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001135940 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001300911 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_006790 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017010060 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017010061 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017010062 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054353825 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC106791 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF133820 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF144477 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK300076 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK300088 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK307620 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK312733 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY689130 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC005376 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471062 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA896167 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KF459595 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KU178476 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KU178477 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  OM273713 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 24 of 24 rows

Ensembl Acc Id: ENST00000239926   ⟹   ENSP00000239926
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl5137,867,860 - 137,887,851 (+)Ensembl
Ensembl Acc Id: ENST00000421631   ⟹   ENSP00000391185
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl5137,867,858 - 137,887,537 (+)Ensembl
Ensembl Acc Id: ENST00000503748
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl5137,880,618 - 137,883,584 (+)Ensembl
Ensembl Acc Id: ENST00000508938
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl5137,886,700 - 137,887,569 (+)Ensembl
Ensembl Acc Id: ENST00000509812
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl5137,867,860 - 137,886,104 (+)Ensembl
Ensembl Acc Id: ENST00000511254
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl5137,880,615 - 137,886,167 (+)Ensembl
Ensembl Acc Id: ENST00000511625
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl5137,867,860 - 137,876,194 (+)Ensembl
Ensembl Acc Id: ENST00000515645   ⟹   ENSP00000426281
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl5137,867,876 - 137,887,528 (+)Ensembl
RefSeq Acc Id: NM_001135940   ⟹   NP_001129412
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh385137,867,860 - 137,887,851 (+)NCBI
GRCh375137,203,536 - 137,223,540 (+)NCBI
HuRef5132,395,358 - 132,415,358 (+)ENTREZGENE
CHM1_15136,636,150 - 136,656,170 (+)NCBI
T2T-CHM13v2.05138,394,286 - 138,414,287 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001300911   ⟹   NP_001287840
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh385137,867,860 - 137,887,851 (+)NCBI
CHM1_15136,636,150 - 136,656,170 (+)NCBI
T2T-CHM13v2.05138,394,286 - 138,414,287 (+)NCBI
Sequence:
RefSeq Acc Id: NM_006790   ⟹   NP_006781
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh385137,867,860 - 137,887,851 (+)NCBI
GRCh375137,203,536 - 137,223,540 (+)NCBI
Build 365137,231,473 - 137,251,440 (+)NCBI Archive
HuRef5132,395,358 - 132,415,358 (+)ENTREZGENE
CHM1_15136,636,150 - 136,656,170 (+)NCBI
T2T-CHM13v2.05138,394,286 - 138,414,287 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017010061   ⟹   XP_016865550
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh385137,875,914 - 137,887,851 (+)NCBI
Sequence:
RefSeq Acc Id: XM_054353825   ⟹   XP_054209800
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.05138,402,349 - 138,414,287 (+)NCBI
RefSeq Acc Id: NP_006781   ⟸   NM_006790
- Peptide Label: isoform a
- UniProtKB: B4DT79 (UniProtKB/Swiss-Prot),   A0A4R6 (UniProtKB/Swiss-Prot),   Q9UBF9 (UniProtKB/Swiss-Prot),   A0A0C4DFM5 (UniProtKB/TrEMBL),   A0A0S2Z522 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001129412   ⟸   NM_001135940
- Peptide Label: isoform b
- UniProtKB: Q9UBF9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001287840   ⟸   NM_001300911
- Peptide Label: isoform c
- UniProtKB: B4DT68 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_016865550   ⟸   XM_017010061
- Peptide Label: isoform X1
- Sequence:
Ensembl Acc Id: ENSP00000391185   ⟸   ENST00000421631
Ig-like   Ig-like C2-type

Name Modeler Protein Id AA Range Protein Structure
AF-Q9UBF9-F1-model_v2 AlphaFold Q9UBF9 1-498 view protein structure

RGD ID:6853520
Promoter ID:EP74587
Type:initiation region
Name:HS_TTID
Description:Titin immunoglobulin domain protein (myotilin).
SO ACC ID:SO:0000170
Source:EPD (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Mammalian gene collection (MGC) full-length cDNA cloning
Position:
Human AssemblyChrPosition (strand)Source
Build 365137,231,464 - 137,231,524EPD
RGD ID:6870670
Promoter ID:EPDNEW_H8500
Type:initiation region
Name:MYOT_1
Description:myotilin
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh385137,867,860 - 137,867,920EPDNEW


1 to 36 of 36 rows
Database
Acc Id
Source(s)
COSMIC MYOT COSMIC
Ensembl Genes ENSG00000120729 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENST00000239926 ENTREZGENE
  ENST00000421631 ENTREZGENE
  ENST00000421631.6 UniProtKB/Swiss-Prot
  ENST00000515645 ENTREZGENE
Gene3D-CATH 2.60.40.10 UniProtKB/Swiss-Prot
GTEx ENSG00000120729 GTEx
HGNC ID HGNC:12399 ENTREZGENE
Human Proteome Map MYOT Human Proteome Map
InterPro Ig-like_dom UniProtKB/Swiss-Prot
  Ig-like_dom_sf UniProtKB/Swiss-Prot
  Ig-like_fold UniProtKB/Swiss-Prot
  Ig_I-set UniProtKB/Swiss-Prot
  Ig_sub UniProtKB/Swiss-Prot
  Ig_sub2 UniProtKB/Swiss-Prot
KEGG Report hsa:9499 UniProtKB/Swiss-Prot
NCBI Gene 9499 ENTREZGENE
OMIM 604103 OMIM
PANTHER BASIGIN RELATED UniProtKB/Swiss-Prot
  MYOTILIN UniProtKB/Swiss-Prot
Pfam I-set UniProtKB/Swiss-Prot
PharmGKB PA37064 PharmGKB
PROSITE IG_LIKE UniProtKB/Swiss-Prot
SMART IGc2 UniProtKB/Swiss-Prot
  SM00409 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF48726 UniProtKB/Swiss-Prot
UniProt A0A0C4DFM5 ENTREZGENE, UniProtKB/TrEMBL
  A0A0S2Z4Y0_HUMAN UniProtKB/TrEMBL
  A0A0S2Z522 ENTREZGENE, UniProtKB/TrEMBL
  A0A4R6 ENTREZGENE
  B4DT68 ENTREZGENE, UniProtKB/TrEMBL
  B4DT79 ENTREZGENE
  MYOTI_HUMAN UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary A0A4R6 UniProtKB/Swiss-Prot
  B4DT79 UniProtKB/Swiss-Prot
1 to 36 of 36 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-04-05 MYOT  myotilin  LGMD1A  limb-girdle muscular dystrophy 1A (autosomal dominant)  Data merged from RGD:1344656 737654 PROVISIONAL