MYOT (myotilin) - Rat Genome Database

Name: MYOT
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: MYOT (myotilin) Canis lupus familiaris

Analyze

Symbol:

MYOT

Name:

myotilin

RGD ID:

12273912

Description:

ENCODES a protein that exhibits alpha-actinin binding (ortholog); INVOLVED IN axon guidance (inferred); dendrite self-avoidance (inferred); homophilic cell adhesion via plasma membrane adhesion molecules (inferred); ASSOCIATED WITH atrial fibrillation (ortholog); autosomal dominant intellectual developmental disorder 31 (ortholog); cardiomyopathy (ortholog); FOUND IN Z disc (ortholog)

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	MYOT (myotilin)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB
Mus musculus (house mouse):	Myot (myotilin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Myot (myotilin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Myot (myotilin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	MYOT (myotilin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Myot (myotilin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	MYOT (myotilin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	MYOT (myotilin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Myot (myotilin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	11	25,574,087 - 25,592,767 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	11	25,564,136 - 25,592,339 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	11	24,338,045 - 24,356,731 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	11	26,424,036 - 26,442,735 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	11	26,424,113 - 26,442,730 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	11	25,131,713 - 25,150,406 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	11	24,955,437 - 24,974,114 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	11	25,618,123 - 25,636,808 (+)	NCBI		UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

atrial fibrillation (ISO)

autosomal dominant intellectual developmental disorder 31 (ISO)

cardiomyopathy (ISO)

congestive heart failure (ISO)

familial adenomatous polyposis 1 (ISO)

genetic disease (ISO)

Hereditary Neoplastic Syndromes (ISO)

limb-girdle muscular dystrophy (ISO)

Muscle Weakness (ISO)

muscular dystrophy (ISO)

myofibrillar myopathy (ISO)

myofibrillar myopathy 3 (ISO)

Neurodevelopmental Disorders (ISO)

peripheral nervous system disease (ISO)

prostate cancer (ISO)

STING-associated vasculopathy with onset in infancy (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

axon guidance (IEA)

dendrite self-avoidance (IEA)

homophilic cell adhesion via plasma membrane adhesion molecules (IEA)

Cellular Component

axon (IEA)

plasma membrane (IEA)

Z disc (ISO)

Molecular Function

alpha-actinin binding (ISO)

cell-cell adhesion mediator activity (IEA)

protein binding (ISO)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

MYOT
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	11	25,574,087 - 25,592,767 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	11	25,564,136 - 25,592,339 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	11	24,338,045 - 24,356,731 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	11	26,424,036 - 26,442,735 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	11	26,424,113 - 26,442,730 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	11	25,131,713 - 25,150,406 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	11	24,955,437 - 24,974,114 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	11	25,618,123 - 25,636,808 (+)	NCBI		UU_Cfam_GSD_1.0

MYOT
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	5	137,867,860 - 137,887,851 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	5	137,867,858 - 137,887,851 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	5	137,203,549 - 137,223,540 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	5	137,231,473 - 137,251,440 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	5	137,231,472 - 137,251,440	NCBI
Celera	5	133,325,839 - 133,345,837 (+)	NCBI		Celera
Cytogenetic Map	5	q31.2	NCBI
HuRef	5	132,395,358 - 132,415,358 (+)	NCBI		HuRef
CHM1_1	5	136,636,150 - 136,656,170 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	5	138,394,286 - 138,414,287 (+)	NCBI		T2T-CHM13v2.0

Myot
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	18	44,467,126 - 44,488,795 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	18	44,467,141 - 44,488,791 (+)	Ensembl		GRCm39 Ensembl
GRCm38	18	44,334,053 - 44,355,740 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	18	44,334,074 - 44,355,724 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	18	44,493,728 - 44,515,376 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	18	44,459,405 - 44,481,053 (+)	NCBI		MGSCv36	mm8
Celera	18	45,713,780 - 45,735,414 (+)	NCBI		Celera
Cytogenetic Map	18	B3	NCBI
cM Map	18	23.74	NCBI

Myot
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	18	36,956,119 - 36,975,728 (+)	NCBI		GRCr8
mRatBN7.2	18	36,705,244 - 36,724,849 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	18	36,705,314 - 36,724,841 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	18	36,809,300 - 36,828,821 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	18	37,527,651 - 37,547,177 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	18	36,904,570 - 36,924,088 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	18	35,573,978 - 35,593,541 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	18	35,574,002 - 35,593,541 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0 Ensembl	9	37,727,942 - 37,747,514 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	18	35,239,617 - 35,259,164 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	18	38,004,000 - 38,023,531 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Cytogenetic Map	18	q11	NCBI

Myot
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955408	32,790,095 - 32,838,258 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955408	32,816,133 - 32,835,230 (+)	NCBI	ChiLan1.0	ChiLan1.0

MYOT
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	4	133,143,300 - 133,170,336 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	5	131,282,853 - 131,309,897 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	5	133,254,644 - 133,274,615 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	5	139,386,101 - 139,411,960 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	5	139,386,101 - 139,411,960 (+)	Ensembl	panpan1.1		panPan2

Myot
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	125,805,178 - 125,822,515 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936597	4,830,027 - 4,847,421 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936597	4,830,111 - 4,847,409 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

MYOT
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	139,861,004 - 139,919,089 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	139,899,245 - 139,919,095 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	145,621,343 - 145,642,087 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

MYOT
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	23	40,542,153 - 40,567,873 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	23	40,548,100 - 40,568,217 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666034	37,323,439 - 37,340,122 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Myot
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624733	9,130,399 - 9,160,908 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624733	9,131,051 - 9,160,813 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in MYOT
191 total Variants

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	reproductive system	respiratory system	adipose tissue
High								1
Medium		2						5
Low	3	3	16		6		2		12	8	9
Below cutoff	2		6	6		6	4				1	6

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003639375	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005626582	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038490192	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038490193	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038490194	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038552271	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038552272	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038552273	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038616134	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038616135	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038616136	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038654150	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038681627	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038681628	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038681629	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000011	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000115	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000356	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000011	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCAFT00000001749 ⟹ ENSCAFP00000001610

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	11	25,574,152 - 25,592,339 (+)	Ensembl

RefSeq Acc Id:

ENSCAFT00000069719 ⟹ ENSCAFP00000052122

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	11	25,564,136 - 25,592,339 (+)	Ensembl

RefSeq Acc Id:

ENSCAFT00845029916 ⟹ ENSCAFP00845023491

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	11	26,424,113 - 26,442,730 (+)	Ensembl

RefSeq Acc Id:

XM_003639375 ⟹ XP_003639423

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	11	25,574,087 - 25,592,767 (+)	NCBI
Dog10K_Boxer_Tasha	11	24,338,045 - 24,356,731 (+)	NCBI

Sequence:

show sequence

CATCAGATGTCACTGTTTGGCAGCTGATAAAAGTCAGTGGCGCTATAATACTAAGCACAGAGCC
ACTAGATTAGTCTGTGAGGGAAGGGGTTGCCTCTTCCTTCCCTTCAGTAGTGGGTTAAACCCAG
CTGGCACCCTCTGGAACGACGGGAACAATATTCTTCAAGAGAAGTCTACTCCATCAAAGACAGG
AACACAATATTCCCAAGATCTCAACGAGGGGCAGACCAAGACTGCTTCTGATTCCTTGGGACCG
TCTGTGATTCCAGGCTTGCCATCCCAAATTAAGGACCCCACCCTTCCAGGAGCAAATTATTACA
GTAATAAATTGCCTTCATCTTCCATATATCAGCTAAGCATGTTTAACTACGAACGTCCAAAACA
CTTCATTCAATCCCAAAATCCATGTGGCTCCAGACTGCAGCCTCCCGGACCGGAAACCTCCAGC
TATTCTAGCCAGACCAAACAGTCTTCCATTATCATCCAGCCCCGCCAATGCTCAGAGCAAAGAT
ATTGTGCCTCCTCAACAGTGAGCTCTCATGTCACCATGTCCTCCTCTGCTTTCCCTGCTTCTCC
CCAGCAGCATGCTGGCTCCAACCCAGGCCAAAGAGTTACAGCCACCTATAACCAGTCCCCAGCC
AGCTTCCTCAGCTCCATATTACCATCACAGCCTGATTATAGTAGCAGTAAAATCCCTTCCAACG
TGGACTCCAACTACCAACAACCCTCATTTGGCCAACCTGTAAATGCTAAGCCATCCCAAAGTAC
AAATGCTAAGCCCATCCCAAGGACTCCTGACCATGAAATACAAGGATCAAAAGAAGCTCTGATT
CAAGATTTGGAGAGAAAGCTAAAATGCAAAGACAGTCTTCTTCATAATGGAAATCAACGGCTAA
CATATGAGGAGAAGATGGCTCGCAGATTGCTAGGACCACAGAATGCAGCTGCTGTGTTTCAAGC
TCAAAATGACAGTGAGGCACAAGACTCACCACAGCACAACTTAGAACATGCACGACTGCAAGTT
CCTACATCACAAGTAAGAAGTAGGTCGTCTTCAAGGGGAGATGTGAATGATCAGGATGCAATCC
AGGAGAAATTTTACCCACCTCGTTTCATTCAAGTGCCAGAGAACATGTCAATTGAAGAAGGAAG
ATTCTGCAGAATGGATTTCAAAGTAAGCGGATTGCCAGCTCCTGATGTGTCATGGTATCTGAAT
GGAAGACCAGTTCAATCAGATGATTTTCACAAAATGATAGTGTCTGAAAAGGGTTTTCATTCAC
TCATCTTTGAAGTGGTCAGAGCTTCAGATGCAGGTGCTTATGCATGTGTTGCCAAGAATAGAGC
AGGAGAAGCCACCTTTACCGTGCAGCTGGATGTCCTGGCAAAAGAACATAGAAGAGCACCAATG
TTTATCTACAAACCACAAAGCAAAAAAGTTTTTGAGGGAGACTCAGTGAAGCTAGAATGCCAAA
TCTCAGCTGTACCTCCACCAAAGCTTTTCTGGAAAAGAAATAATGAAATGGTACAATTCAACAC
TGATCGAATAAGTTTATATCATGATAACTCTGGAAGAGTTACTTTACTGATAAAAGATGTAAAC
AAGAAAGATGCTGGGTGGTATACTGTGTCTGCAGTTAATGAAGCTGGAGTGACCACATGTAACA
CAAGATTAGATGTTACAGTCCGTCAAAACCAAACTCTTCCGGCCCCTAAGCAGTTACGTGTTCG
ACCAACTTTCAGTAAATATTTCGCACTTAACGGTAGAGGTCTGGATGTGAAACAAGCTTTTAAC
CCTGAAGGAGAATTTCAGCGTCTGGCAGCTCAATCTGGACTCTATGAAAGTGAAGAACTTTAAT
GAGGTTACCAACACTGGAAAACACAATAACTACATTATTAGTAATATATTCAATTAAATTAAAT
TTTTAAAATAAATAAATCCATGGCAGTATTAACAGATTATGGCTTTAATTAGGTAATATAACTA
ATATACATTTATATTTATCCTTTGACTCTTGCACATTCTATCTTCTTCTCTGGTTTGCGAAGCC
TCTGGAAAATCTGGGCATATGAGTTTGTAATTGTAGAATCCATCTCAAAATGTGAGATTTTAAC
ATTTAAGTCATACACATCAACTTTTTAAGCACATCTAATGCTTGTAATAAGGTTTACCGGTACT
GCTTTCTAAATACCGTTTTACCTGTTTTCTCTTATAGGAATACTAACAAGGCATTGATTATCTG
AGTGTTCCATAGTTCAATGTCAAAAGAGAATAAAATTTCAAATATTTCAAAGAC

hide sequence

RefSeq Acc Id:

XM_005626582 ⟹ XP_005626639

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	11	25,574,087 - 25,592,767 (+)	NCBI
Dog10K_Boxer_Tasha	11	24,338,045 - 24,356,731 (+)	NCBI

Sequence:

show sequence

CATCAGATGTCACTGTTTGGCAGCTGATAAAAGTCAGTGGCGCTATAATACTAAGCACAGAGCC
ACTAGATTAGTCTGTGAGGGAAGGGGTTGCCTCTTCCTTCCCTTCAGTAGTGGGTTAAACCCAG
CTGGCACCCTCTGGAACGACGGGAACAATATTCTTCAAGAGAAGTCTACTCCATCAAAGACAGG
AACACAATATTCCCAAGATCTCAACGAGGGGCAGACCAAGACTGCTTCTGATTCCTTGGGACCG
TCTGTGATTCCAGGCTTGCCATCCCAAATTAAGGACCCCACCCTTCCAGGAGCAAATTATTACA
GTAATAAATTGCCTTCATCTTCCATATATCAGCTAAGCATGTTTAACTACGAACGTCCAAAACA
CTTCATTCAATCCCAAAATCCATGTGGCTCCAGACTGCAGCCTCCCGGACCGGAAACCTCCAGC
TATTCTAGCCAGACCAAACAGTCTTCCATTATCATCCAGCCCCGCCAATGCTCAGAGCAAAGAT
ATTGTGCCTCCTCAACAGTGAGCTCTCATGTCACCATGTCCTCCTCTGCTTTCCCTGCTTCTCC
CCAGCAGCATGCTGGCTCCAACCCAGGCCAAAGAGTTACAGCCACCTATAACCAGTCCCCAGCC
AGCTTCCTCAGCTCCATATTACCATCACAGCCTGATTATAGTAGCAGTAAAATCCCTTCCAACG
TGGACTCCAACTACCAACAACCCTCATTTGGCCAACCTGTAAATGCTAAGCCATCCCAAAGTAC
AAATGCTAAGCCCATCCCAAGGACTCCTGACCATGAAATACAAGGATCAAAAGAAGCTCTGATT
CAAGATTTGGAGAGAAAGCTAAAATGCAAAGACAGTCTTCTTCATAATGGAAATCAACGGCTAA
CATATGAGGAGAAGATGGCTCGCAGATTGCTAGGACCACAGAATGCAGCTGCTGTGTTTCAAGC
TCAAAATGACAGTGAGGCACAAGACTCACCACAGCAGCACAACTTAGAACATGCACGACTGCAA
GTTCCTACATCACAAGTAAGAAGTAGGTCGTCTTCAAGGGGAGATGTGAATGATCAGGATGCAA
TCCAGGAGAAATTTTACCCACCTCGTTTCATTCAAGTGCCAGAGAACATGTCAATTGAAGAAGG
AAGATTCTGCAGAATGGATTTCAAAGTAAGCGGATTGCCAGCTCCTGATGTGTCATGGTATCTG
AATGGAAGACCAGTTCAATCAGATGATTTTCACAAAATGATAGTGTCTGAAAAGGGTTTTCATT
CACTCATCTTTGAAGTGGTCAGAGCTTCAGATGCAGGTGCTTATGCATGTGTTGCCAAGAATAG
AGCAGGAGAAGCCACCTTTACCGTGCAGCTGGATGTCCTGGCAAAAGAACATAGAAGAGCACCA
ATGTTTATCTACAAACCACAAAGCAAAAAAGTTTTTGAGGGAGACTCAGTGAAGCTAGAATGCC
AAATCTCAGCTGTACCTCCACCAAAGCTTTTCTGGAAAAGAAATAATGAAATGGTACAATTCAA
CACTGATCGAATAAGTTTATATCATGATAACTCTGGAAGAGTTACTTTACTGATAAAAGATGTA
AACAAGAAAGATGCTGGGTGGTATACTGTGTCTGCAGTTAATGAAGCTGGAGTGACCACATGTA
ACACAAGATTAGATGTTACAGTCCGTCAAAACCAAACTCTTCCGGCCCCTAAGCAGTTACGTGT
TCGACCAACTTTCAGTAAATATTTCGCACTTAACGGTAGAGGTCTGGATGTGAAACAAGCTTTT
AACCCTGAAGGAGAATTTCAGCGTCTGGCAGCTCAATCTGGACTCTATGAAAGTGAAGAACTTT
AATGAGGTTACCAACACTGGAAAACACAATAACTACATTATTAGTAATATATTCAATTAAATTA
AATTTTTAAAATAAATAAATCCATGGCAGTATTAACAGATTATGGCTTTAATTAGGTAATATAA
CTAATATACATTTATATTTATCCTTTGACTCTTGCACATTCTATCTTCTTCTCTGGTTTGCGAA
GCCTCTGGAAAATCTGGGCATATGAGTTTGTAATTGTAGAATCCATCTCAAAATGTGAGATTTT
AACATTTAAGTCATACACATCAACTTTTTAAGCACATCTAATGCTTGTAATAAGGTTTACCGGT
ACTGCTTTCTAAATACCGTTTTACCTGTTTTCTCTTATAGGAATACTAACAAGGCATTGATTAT
CTGAGTGTTCCATAGTTCAATGTCAAAAGAGAATAAAATTTCAAATATTTCAAAGAC

hide sequence

RefSeq Acc Id:

XM_038490192 ⟹ XP_038346120

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	11	25,131,713 - 25,150,406 (+)	NCBI

RefSeq Acc Id:

XM_038490193 ⟹ XP_038346121

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	11	25,131,790 - 25,150,406 (+)	NCBI

RefSeq Acc Id:

XM_038490194 ⟹ XP_038346122

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	11	25,131,713 - 25,150,406 (+)	NCBI

RefSeq Acc Id:

XM_038552271 ⟹ XP_038408199

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	11	25,618,123 - 25,636,808 (+)	NCBI

RefSeq Acc Id:

XM_038552272 ⟹ XP_038408200

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	11	25,618,200 - 25,636,808 (+)	NCBI

RefSeq Acc Id:

XM_038552273 ⟹ XP_038408201

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	11	25,618,123 - 25,636,808 (+)	NCBI

RefSeq Acc Id:

XM_038616134 ⟹ XP_038472062

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	11	24,955,437 - 24,974,114 (+)	NCBI

RefSeq Acc Id:

XM_038616135 ⟹ XP_038472063

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	11	24,955,514 - 24,974,114 (+)	NCBI

RefSeq Acc Id:

XM_038616136 ⟹ XP_038472064

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	11	24,955,437 - 24,974,114 (+)	NCBI

RefSeq Acc Id:

XM_038654150 ⟹ XP_038510078

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
Dog10K_Boxer_Tasha	11	24,338,122 - 24,356,731 (+)	NCBI

RefSeq Acc Id:

XM_038681627 ⟹ XP_038537555

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	11	26,424,036 - 26,442,735 (+)	NCBI

RefSeq Acc Id:

XM_038681628 ⟹ XP_038537556

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	11	26,424,113 - 26,442,735 (+)	NCBI

RefSeq Acc Id:

XM_038681629 ⟹ XP_038537557

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	11	26,424,036 - 26,442,735 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_003639423	(Get FASTA)	NCBI Sequence Viewer
	XP_005626639	(Get FASTA)	NCBI Sequence Viewer
	XP_038346120	(Get FASTA)	NCBI Sequence Viewer
	XP_038346121	(Get FASTA)	NCBI Sequence Viewer
	XP_038346122	(Get FASTA)	NCBI Sequence Viewer
	XP_038408199	(Get FASTA)	NCBI Sequence Viewer
	XP_038408200	(Get FASTA)	NCBI Sequence Viewer
	XP_038408201	(Get FASTA)	NCBI Sequence Viewer
	XP_038472062	(Get FASTA)	NCBI Sequence Viewer
	XP_038472063	(Get FASTA)	NCBI Sequence Viewer
	XP_038472064	(Get FASTA)	NCBI Sequence Viewer
	XP_038510078	(Get FASTA)	NCBI Sequence Viewer
	XP_038537555	(Get FASTA)	NCBI Sequence Viewer
	XP_038537556	(Get FASTA)	NCBI Sequence Viewer
	XP_038537557	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCAFP00000001610.3
	ENSCAFP00030009833.1
	ENSCAFP00030009866.1
	ENSCAFP00040018926.1
	ENSCAFP00845023491
	ENSCAFP00845023491.1

RefSeq Acc Id:	XP_005626639 ⟸ XM_005626582
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0QX73 (UniProtKB/TrEMBL), A0A8C0SBP2 (UniProtKB/TrEMBL), A0A8I3NQS6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MFNYERPKHFIQSQNPCGSRLQPPGPETSSYSSQTKQSSIIIQPRQCSEQRYCASSTVSSHVTM SSSAFPASPQQHAGSNPGQRVTATYNQSPASFLSSILPSQPDYSSSKIPSNVDSNYQQPSFGQP VNAKPSQSTNAKPIPRTPDHEIQGSKEALIQDLERKLKCKDSLLHNGNQRLTYEEKMARRLLGP QNAAAVFQAQNDSEAQDSPQQHNLEHARLQVPTSQVRSRSSSRGDVNDQDAIQEKFYPPRFIQV PENMSIEEGRFCRMDFKVSGLPAPDVSWYLNGRPVQSDDFHKMIVSEKGFHSLIFEVVRASDAG AYACVAKNRAGEATFTVQLDVLAKEHRRAPMFIYKPQSKKVFEGDSVKLECQISAVPPPKLFWK RNNEMVQFNTDRISLYHDNSGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTVRQNQT LPAPKQLRVRPTFSKYFALNGRGLDVKQAFNPEGEFQRLAAQSGLYESEEL hide sequence

RefSeq Acc Id:	XP_003639423 ⟸ XM_003639375
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C0QX73 (UniProtKB/TrEMBL)
- Sequence:	show sequence MFNYERPKHFIQSQNPCGSRLQPPGPETSSYSSQTKQSSIIIQPRQCSEQRYCASSTVSSHVTM SSSAFPASPQQHAGSNPGQRVTATYNQSPASFLSSILPSQPDYSSSKIPSNVDSNYQQPSFGQP VNAKPSQSTNAKPIPRTPDHEIQGSKEALIQDLERKLKCKDSLLHNGNQRLTYEEKMARRLLGP QNAAAVFQAQNDSEAQDSPQHNLEHARLQVPTSQVRSRSSSRGDVNDQDAIQEKFYPPRFIQVP ENMSIEEGRFCRMDFKVSGLPAPDVSWYLNGRPVQSDDFHKMIVSEKGFHSLIFEVVRASDAGA YACVAKNRAGEATFTVQLDVLAKEHRRAPMFIYKPQSKKVFEGDSVKLECQISAVPPPKLFWKR NNEMVQFNTDRISLYHDNSGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTVRQNQTL PAPKQLRVRPTFSKYFALNGRGLDVKQAFNPEGEFQRLAAQSGLYESEEL hide sequence

RefSeq Acc Id:

ENSCAFP00000001610 ⟸ ENSCAFT00000001749

RefSeq Acc Id:

ENSCAFP00000052122 ⟸ ENSCAFT00000069719

RefSeq Acc Id:	XP_038346120 ⟸ XM_038490192
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038346122 ⟸ XM_038490194
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038346121 ⟸ XM_038490193
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038472062 ⟸ XM_038616134
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038472064 ⟸ XM_038616136
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038472063 ⟸ XM_038616135
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038537555 ⟸ XM_038681627
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0QX73 (UniProtKB/TrEMBL), A0A8C0SBP2 (UniProtKB/TrEMBL), A0A8I3NQS6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038537557 ⟸ XM_038681629
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C0QX73 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038537556 ⟸ XM_038681628
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0QX73 (UniProtKB/TrEMBL), A0A8C0SBP2 (UniProtKB/TrEMBL), A0A8I3NQS6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038510078 ⟸ XM_038654150
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0QX73 (UniProtKB/TrEMBL), A0A8C0SBP2 (UniProtKB/TrEMBL), A0A8I3NQS6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038408199 ⟸ XM_038552271
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0QX73 (UniProtKB/TrEMBL), A0A8C0SBP2 (UniProtKB/TrEMBL), A0A8I3NQS6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038408201 ⟸ XM_038552273
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C0QX73 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038408200 ⟸ XM_038552272
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0QX73 (UniProtKB/TrEMBL), A0A8C0SBP2 (UniProtKB/TrEMBL), A0A8I3NQS6 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSCAFP00845023491 ⟸ ENSCAFT00845029916

Protein Domains

Ig-like

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000001140	Ensembl, UniProtKB/TrEMBL
	ENSCAFG00030006102	UniProtKB/TrEMBL
	ENSCAFG00040011779	UniProtKB/TrEMBL
	ENSCAFG00845016877	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00000001749.5	UniProtKB/TrEMBL
	ENSCAFT00030011246.1	UniProtKB/TrEMBL
	ENSCAFT00030011285.1	UniProtKB/TrEMBL
	ENSCAFT00040021810.1	UniProtKB/TrEMBL
	ENSCAFT00845029916	ENTREZGENE
	ENSCAFT00845029916.1	UniProtKB/TrEMBL
Gene3D-CATH	2.60.40.10	UniProtKB/TrEMBL
InterPro	Ig-like_dom	UniProtKB/TrEMBL
	Ig-like_dom_sf	UniProtKB/TrEMBL
	Ig-like_fold	UniProtKB/TrEMBL
	Ig_I-set	UniProtKB/TrEMBL
	Ig_sub	UniProtKB/TrEMBL
	Ig_sub2	UniProtKB/TrEMBL
NCBI Gene	MYOT	ENTREZGENE
PANTHER	BASIGIN RELATED	UniProtKB/TrEMBL
	MYOTILIN	UniProtKB/TrEMBL
Pfam	I-set	UniProtKB/TrEMBL
PROSITE	IG_LIKE	UniProtKB/TrEMBL
SMART	IGc2	UniProtKB/TrEMBL
	SM00409	UniProtKB/TrEMBL
Superfamily-SCOP	SSF48726	UniProtKB/TrEMBL
UniProt	A0A8C0MPG5_CANLF	UniProtKB/TrEMBL
	A0A8C0QX73	ENTREZGENE
	A0A8C0SBP2	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3NQS6	ENTREZGENE, UniProtKB/TrEMBL
VGNC ID	VGNC:51746	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

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Imported Disease Annotations - CTD

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