Advanced Search (OLGA)

Gene: PDLIM7 (PDZ and LIM domain 7) Homo sapiens

Subscribe to Updates

Analyze

Symbol:

PDLIM7

Name:

PDZ and LIM domain 7

RGD ID:

1606830

HGNC Page

HGNC:22958

Description:

Predicted to enable actin binding activity and muscle alpha-actinin binding activity. Predicted to be involved in actin cytoskeleton organization; heart development; and muscle structure development. Located in several cellular components, including adherens junction; focal adhesion; and nucleoplasm.

Type:

protein-coding

RefSeq Status:

REVIEWED

Previously known as:

1110003B01Rik; LIM domain protein; LIM mineralization protein; Lim mineralization protein 3; LMP; LMP1; LMP3; PDZ and LIM domain 7 (enigma); PDZ and LIM domain protein 7; protein enigma

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Mus musculus (house mouse):	Pdlim7 (PDZ and LIM domain 7)	HGNC	EggNOG, Ensembl, HGNC, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Rattus norvegicus (Norway rat):	Pdlim7 (PDZ and LIM domain 7)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Chinchilla lanigera (long-tailed chinchilla):	Pdlim7 (PDZ and LIM domain 7)	NCBI	Ortholog
Pan paniscus (bonobo/pygmy chimpanzee):	PDLIM7 (PDZ and LIM domain 7)	NCBI	Ortholog
Canis lupus familiaris (dog):	PDLIM7 (PDZ and LIM domain 7)	HGNC	Ensembl, HomoloGene, NCBI, OMA, OrthoMCL, Panther, Treefam
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Pdlim7 (PDZ and LIM domain 7)	NCBI	Ortholog
Sus scrofa (pig):	PDLIM7 (PDZ and LIM domain 7)	HGNC	Ensembl, NCBI, OrthoDB
Chlorocebus sabaeus (green monkey):	PDLIM7 (PDZ and LIM domain 7)	NCBI	Ortholog
Heterocephalus glaber (naked mole-rat):	Pdlim7 (PDZ and LIM domain 7)	NCBI	Ortholog
Other homologs ²
Rattus norvegicus (Norway rat):	Gstt2 (glutathione S-transferase theta 2)	HGNC	OMA
Alliance orthologs ³
Rattus norvegicus (Norway rat):	Pdlim7 (PDZ and LIM domain 7)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Pdlim7 (PDZ and LIM domain 7)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	pdlim7 (PDZ and LIM domain 7)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid\|ZFIN)
Caenorhabditis elegans (roundworm):	alp-1	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER)
Drosophila melanogaster (fruit fly):	Zasp52	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	pdlim7	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)
Xenopus laevis (African clawed frog):	pdlim7.S	Alliance	DIOPT (Xenbase)
Xenopus laevis (African clawed frog):	pdlim7.L	Alliance	DIOPT (Xenbase)

Related Pseudogenes:

LOC100130891

Allele / Splice:

See ClinVar data

Latest Assembly:

GRCh38 - Human Genome Assembly GRCh38

Position:

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	5	177,483,394 - 177,497,604 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	5	177,483,394 - 177,497,606 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	5	176,910,395 - 176,924,605 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	5	176,843,001 - 176,857,208 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	5	171,577,128 - 171,591,311 (+)	NCBI		Celera
Cytogenetic Map	5	q35.3	NCBI
HuRef	5	171,830,716 - 171,845,067 (-)	NCBI		HuRef
CHM1_1	5	176,343,378 - 176,357,560 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	5	178,026,382 - 178,040,598 (-)	NCBI		T2T-CHM13v2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
PDLIM7	Human	Ehlers-Danlos syndrome dermatosparaxis type		IAGP	RGD:156439716	8554872	ClinVar Annotator: match by term: Ehlers-Danlos syndrome, dermatosparaxis type	ClinVar	PMID:16770806\|PMID:17090394\|PMID:21567906\|PMID:23599694\|PMID:23913520\|PMID:24819041\|PMID:28128410\|PMID:28492532\|PMID:33389145
PDLIM7	Human	Ehlers-Danlos syndrome spondylodysplastic type 2		IAGP	RGD:151795153	8554872	ClinVar Annotator: match by term: Ehlers-Danlos syndrome progeroid type	ClinVar	PMID:28492532
PDLIM7	Human	Marfanoid Mental Retardation Syndrome, Autosomal		IAGP	RGD:14977181	8554872	ClinVar Annotator: match by term: Marfanoid habitus and intellectual disability	ClinVar	PMID:25741868
PDLIM7	Human	Sotos syndrome		IAGP	RGD:156441441	8554872	ClinVar Annotator: match by term: Sotos syndrome	ClinVar	PMID:28492532
PDLIM7	Human	Sotos syndrome		IAGP	RGD:156439716	8554872	ClinVar Annotator: match by term: Sotos syndrome	ClinVar	PMID:16770806\|PMID:17090394\|PMID:21567906\|PMID:23599694\|PMID:23913520\|PMID:24819041\|PMID:28128410\|PMID:28492532\|PMID:33389145
PDLIM7	Human	Sotos syndrome		IAGP	RGD:156438171	8554872	ClinVar Annotator: match by term: Sotos syndrome	ClinVar	PMID:12464997\|PMID:14571271\|PMID:15942875\|PMID:16247291\|PMID:18505455\|PMID:21597970\|PMID:25608832\|PMID:26047794\|PMID:28492532

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
PDLIM7	Human	(1->4)-beta-D-glucan	multiple interactions	ISO	RGD:1332514	6480464	[perfluorooctane sulfonic acid co-treated with Cellulose] results in increased expression of PDLIM7 mRNA	CTD	PMID:36331819
PDLIM7	Human	1,1-dichloroethene	increases expression	ISO	RGD:1332514	6480464	vinylidene chloride results in increased expression of PDLIM7 mRNA	CTD	PMID:26682919
PDLIM7	Human	1,2-dichloroethane	decreases expression	ISO	RGD:1332514	6480464	ethylene dichloride results in decreased expression of PDLIM7 mRNA	CTD	PMID:28960355
PDLIM7	Human	1,2-dimethylhydrazine	increases expression	ISO	RGD:1332514	6480464	1,2-Dimethylhydrazine results in increased expression of PDLIM7 mRNA	CTD	PMID:22206623
PDLIM7	Human	17beta-estradiol	increases expression	ISO	RGD:1332514	6480464	Estradiol results in increased expression of PDLIM7 mRNA	CTD	PMID:19484750\|PMID:39298647
PDLIM7	Human	17beta-estradiol	multiple interactions	EXP		6480464	[Estradiol co-treated with TGFB1 protein] results in increased expression of PDLIM7 mRNA	CTD	PMID:30165855
PDLIM7	Human	2,3,7,8-tetrachlorodibenzodioxine	decreases expression	ISO	RGD:1332514	6480464	Tetrachlorodibenzodioxin results in decreased expression of PDLIM7 mRNA	CTD	PMID:19465110
PDLIM7	Human	2,3,7,8-tetrachlorodibenzodioxine	increases expression	ISO	RGD:628769	6480464	Tetrachlorodibenzodioxin results in increased expression of PDLIM7 mRNA	CTD	PMID:33387578\|PMID:34747641
PDLIM7	Human	2,3,7,8-tetrachlorodibenzodioxine	affects expression	ISO	RGD:1332514	6480464	Tetrachlorodibenzodioxin affects the expression of PDLIM7 mRNA	CTD	PMID:21570461\|PMID:24680724
PDLIM7	Human	2,3,7,8-tetrachlorodibenzodioxine	affects expression	EXP		6480464	Tetrachlorodibenzodioxin affects the expression of PDLIM7 mRNA	CTD	PMID:22574217
PDLIM7	Human	2,6-dimethoxyphenol	multiple interactions	EXP		6480464	[Sodium Chloride co-treated with pyrogallol 1,3-dimethyl ether] results in increased expression of and affects the more ...	CTD	PMID:38598786
PDLIM7	Human	3-chloropropane-1,2-diol	increases expression	ISO	RGD:628769	6480464	alpha-Chlorohydrin results in increased expression of PDLIM7 protein	CTD	PMID:34915118
PDLIM7	Human	4,4'-sulfonyldiphenol	increases expression	EXP		6480464	bisphenol S results in increased expression of PDLIM7 protein	CTD	PMID:34186270
PDLIM7	Human	4-hydroxyphenyl retinamide	increases expression	ISO	RGD:1332514	6480464	Fenretinide results in increased expression of PDLIM7 mRNA	CTD	PMID:28973697
PDLIM7	Human	6-propyl-2-thiouracil	increases expression	ISO	RGD:628769	6480464	Propylthiouracil results in increased expression of PDLIM7 mRNA	CTD	PMID:30047161
PDLIM7	Human	acetylsalicylic acid	decreases expression	EXP		6480464	Aspirin results in decreased expression of PDLIM7 mRNA	CTD	PMID:15928584
PDLIM7	Human	aconitine	increases expression	ISO	RGD:628769	6480464	Aconitine results in increased expression of PDLIM7 protein	CTD	PMID:33236894
PDLIM7	Human	acrylamide	decreases expression	EXP		6480464	Acrylamide results in decreased expression of PDLIM7 mRNA	CTD	PMID:32763439
PDLIM7	Human	acrylamide	increases expression	EXP		6480464	Acrylamide results in increased expression of PDLIM7 mRNA	CTD	PMID:38554842
PDLIM7	Human	actinomycin D	multiple interactions	EXP		6480464	[Dactinomycin co-treated with nutlin 3] results in increased secretion of PDLIM7 protein	CTD	PMID:38460933
PDLIM7	Human	aflatoxin B1	increases expression	ISO	RGD:1332514	6480464	Aflatoxin B1 results in increased expression of PDLIM7 mRNA	CTD	PMID:19770486
PDLIM7	Human	aflatoxin B1	increases expression	EXP		6480464	Aflatoxin B1 results in increased expression of PDLIM7 mRNA	CTD	PMID:21641981\|PMID:22100608
PDLIM7	Human	all-trans-retinoic acid	increases expression	EXP		6480464	Tretinoin results in increased expression of PDLIM7 mRNA	CTD	PMID:23724009
PDLIM7	Human	amitrole	increases expression	ISO	RGD:628769	6480464	Amitrole results in increased expression of PDLIM7 mRNA	CTD	PMID:30047161
PDLIM7	Human	ammonium chloride	affects expression	ISO	RGD:628769	6480464	Ammonium Chloride affects the expression of PDLIM7 mRNA	CTD	PMID:16483693
PDLIM7	Human	amphotericin B	decreases expression	EXP		6480464	Amphotericin B analog results in decreased expression of PDLIM7 mRNA	CTD	PMID:28534445
PDLIM7	Human	aristolochic acid A	decreases expression	EXP		6480464	aristolochic acid I results in decreased expression of PDLIM7 mRNA	CTD	PMID:33212167
PDLIM7	Human	arsenous acid	increases expression	EXP		6480464	Arsenic Trioxide results in increased expression of PDLIM7 mRNA	CTD	PMID:15761015
PDLIM7	Human	atrazine	increases expression	EXP		6480464	Atrazine results in increased expression of PDLIM7 mRNA	CTD	PMID:22378314
PDLIM7	Human	atrazine	affects methylation	ISO	RGD:628769	6480464	Atrazine affects the methylation of PDLIM7 gene	CTD	PMID:35440735
PDLIM7	Human	benzo[a]pyrene	decreases expression	ISO	RGD:1332514	6480464	Benzo(a)pyrene results in decreased expression of PDLIM7 mRNA	CTD	PMID:19770486
PDLIM7	Human	benzo[a]pyrene	increases expression	EXP		6480464	Benzo(a)pyrene results in increased expression of PDLIM7 mRNA	CTD	PMID:21632981\|PMID:21871943\|PMID:32234424
PDLIM7	Human	benzo[a]pyrene	increases expression	ISO	RGD:1332514	6480464	Benzo(a)pyrene results in increased expression of PDLIM7 mRNA	CTD	PMID:21569818\|PMID:22228805
PDLIM7	Human	beta-lapachone	increases expression	EXP		6480464	beta-lapachone results in increased expression of PDLIM7 mRNA	CTD	PMID:38218311
PDLIM7	Human	bis(2-chloroethyl) sulfide	increases expression	EXP		6480464	Mustard Gas results in increased expression of PDLIM7 mRNA	CTD	PMID:25102026
PDLIM7	Human	bisphenol A	affects expression	ISO	RGD:628769	6480464	bisphenol A affects the expression of PDLIM7 mRNA	CTD	PMID:25181051
PDLIM7	Human	bisphenol A	increases expression	EXP		6480464	bisphenol A results in increased expression of PDLIM7 protein	CTD	PMID:34186270
PDLIM7	Human	bisphenol A	decreases expression	ISO	RGD:1332514	6480464	bisphenol A results in decreased expression of PDLIM7 mRNA	CTD	PMID:35598803
PDLIM7	Human	bisphenol A	decreases expression	ISO	RGD:628769	6480464	bisphenol A results in decreased expression of PDLIM7 mRNA	CTD	PMID:32145629\|PMID:33296240
PDLIM7	Human	bisphenol A	affects expression	EXP		6480464	bisphenol A affects the expression of PDLIM7 mRNA; bisphenol A affects the expression of PDLIM7 more ...	CTD	PMID:30903817\|PMID:37567409
PDLIM7	Human	bisphenol AF	increases expression	EXP		6480464	bisphenol AF results in increased expression of PDLIM7 protein	CTD	PMID:34186270
PDLIM7	Human	Bisphenol B	increases expression	EXP		6480464	bisphenol B results in increased expression of PDLIM7 protein	CTD	PMID:34186270
PDLIM7	Human	bisphenol F	decreases expression	ISO	RGD:1332514	6480464	bisphenol F results in decreased expression of PDLIM7 mRNA	CTD	PMID:38685157
PDLIM7	Human	bisphenol F	increases expression	EXP		6480464	bisphenol F results in increased expression of PDLIM7 protein	CTD	PMID:34186270
PDLIM7	Human	butanal	increases expression	EXP		6480464	butyraldehyde results in increased expression of PDLIM7 mRNA	CTD	PMID:26079696
PDLIM7	Human	cadmium dichloride	decreases methylation	ISO	RGD:628769	6480464	Cadmium Chloride results in decreased methylation of PDLIM7 promoter	CTD	PMID:22457795
PDLIM7	Human	cadmium dichloride	increases expression	EXP		6480464	Cadmium Chloride results in increased expression of PDLIM7 mRNA	CTD	PMID:38568856
PDLIM7	Human	cadmium dichloride	decreases expression	EXP		6480464	Cadmium Chloride results in decreased expression of PDLIM7 mRNA	CTD	PMID:26472689
PDLIM7	Human	caffeine	decreases phosphorylation	EXP		6480464	Caffeine results in decreased phosphorylation of PDLIM7 protein	CTD	PMID:35688186
PDLIM7	Human	carbon nanotube	increases expression	ISO	RGD:1332514	6480464	Nanotubes, Carbon analog results in increased expression of PDLIM7 mRNA; Nanotubes, Carbon results in increased more ...	CTD	PMID:25554681
PDLIM7	Human	carbon nanotube	multiple interactions	ISO	RGD:1332514	6480464	[Dibutyl Phthalate co-treated with Nanotubes, Carbon] results in decreased expression of PDLIM7 protein	CTD	PMID:34864091
PDLIM7	Human	chlordecone	increases expression	ISO	RGD:1332514	6480464	Chlordecone results in increased expression of PDLIM7 mRNA	CTD	PMID:33711761
PDLIM7	Human	chlorpyrifos	increases expression	ISO	RGD:1332514	6480464	Chlorpyrifos results in increased expression of PDLIM7 mRNA	CTD	PMID:37019170
PDLIM7	Human	choline	multiple interactions	ISO	RGD:1332514	6480464	[Methionine deficiency co-treated with Choline deficiency co-treated with Folic Acid deficiency] results in increased expression more ...	CTD	PMID:20938992
PDLIM7	Human	chromium(6+)	multiple interactions	EXP		6480464	[zinc chromate results in increased abundance of chromium hexavalent ion] which results in decreased expression more ...	CTD	PMID:38479592
PDLIM7	Human	cisplatin	decreases expression	ISO	RGD:628769	6480464	Cisplatin results in decreased expression of PDLIM7 mRNA	CTD	PMID:22023808
PDLIM7	Human	cisplatin	increases expression	EXP		6480464	Cisplatin results in increased expression of PDLIM7 mRNA	CTD	PMID:27594783
PDLIM7	Human	clofibrate	decreases expression	ISO	RGD:1332514	6480464	Clofibrate results in decreased expression of PDLIM7 mRNA	CTD	PMID:17585979
PDLIM7	Human	copper(II) chloride	increases expression	EXP		6480464	cupric chloride results in increased expression of PDLIM7 mRNA	CTD	PMID:38568856
PDLIM7	Human	copper(II) sulfate	increases expression	EXP		6480464	Copper Sulfate results in increased expression of PDLIM7 mRNA	CTD	PMID:19549813
PDLIM7	Human	corticosterone	increases expression	ISO	RGD:628769	6480464	Corticosterone results in increased expression of PDLIM7 mRNA	CTD	PMID:15755911
PDLIM7	Human	Cuprizon	increases expression	ISO	RGD:628769	6480464	Cuprizone results in increased expression of PDLIM7 mRNA	CTD	PMID:26577399
PDLIM7	Human	cyclosporin A	increases expression	EXP		6480464	Cyclosporine results in increased expression of PDLIM7 mRNA	CTD	PMID:25562108
PDLIM7	Human	dexamethasone	decreases expression	EXP		6480464	Dexamethasone results in decreased expression of PDLIM7 mRNA	CTD	PMID:25047013
PDLIM7	Human	diarsenic trioxide	increases expression	EXP		6480464	Arsenic Trioxide results in increased expression of PDLIM7 mRNA	CTD	PMID:15761015
PDLIM7	Human	diazinon	increases methylation	EXP		6480464	Diazinon results in increased methylation of PDLIM7 gene	CTD	PMID:22964155
PDLIM7	Human	Dibutyl phosphate	affects expression	EXP		6480464	di-n-butylphosphoric acid affects the expression of PDLIM7 mRNA	CTD	PMID:37042841
PDLIM7	Human	dibutyl phthalate	increases expression	ISO	RGD:1332514	6480464	Dibutyl Phthalate results in increased expression of PDLIM7 mRNA	CTD	PMID:21266533
PDLIM7	Human	dibutyl phthalate	multiple interactions	ISO	RGD:1332514	6480464	[Dibutyl Phthalate co-treated with Nanotubes, Carbon] results in decreased expression of PDLIM7 protein	CTD	PMID:34864091
PDLIM7	Human	dibutyl phthalate	increases expression	ISO	RGD:628769	6480464	Dibutyl Phthalate results in increased expression of PDLIM7 mRNA	CTD	PMID:21266533
PDLIM7	Human	dioxygen	multiple interactions	ISO	RGD:1332514	6480464	[NFE2L2 protein affects the susceptibility to Oxygen] which affects the expression of PDLIM7 mRNA	CTD	PMID:30529165
PDLIM7	Human	diuron	increases expression	ISO	RGD:628769	6480464	Diuron results in increased expression of PDLIM7 mRNA	CTD	PMID:21551480
PDLIM7	Human	dorsomorphin	multiple interactions	EXP		6480464	[NOG protein co-treated with entinostat co-treated with dorsomorphin co-treated with 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in decreased expression more ...	CTD	PMID:27188386
PDLIM7	Human	elemental selenium	increases expression	EXP		6480464	Selenium results in increased expression of PDLIM7 mRNA	CTD	PMID:19244175
PDLIM7	Human	endosulfan	decreases expression	ISO	RGD:628769	6480464	Endosulfan results in decreased expression of PDLIM7 mRNA	CTD	PMID:29391264
PDLIM7	Human	entinostat	multiple interactions	EXP		6480464	[NOG protein co-treated with entinostat co-treated with dorsomorphin co-treated with 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in decreased expression more ...	CTD	PMID:27188386
PDLIM7	Human	entinostat	decreases expression	EXP		6480464	entinostat results in decreased expression of PDLIM7 mRNA	CTD	PMID:26272509
PDLIM7	Human	fenvalerate	decreases expression	ISO	RGD:628769	6480464	fenvalerate results in decreased expression of PDLIM7 mRNA	CTD	PMID:30307764
PDLIM7	Human	folic acid	multiple interactions	ISO	RGD:1332514	6480464	[Methionine deficiency co-treated with Choline deficiency co-treated with Folic Acid deficiency] results in increased expression more ...	CTD	PMID:20938992
PDLIM7	Human	FR900359	decreases phosphorylation	EXP		6480464	FR900359 results in decreased phosphorylation of PDLIM7 protein	CTD	PMID:37730182
PDLIM7	Human	furfural	multiple interactions	EXP		6480464	[Sodium Chloride co-treated with Furaldehyde] results in decreased expression of and affects the localization of more ...	CTD	PMID:38598786
PDLIM7	Human	genistein	increases expression	ISO	RGD:1332514	6480464	Genistein results in increased expression of PDLIM7 mRNA	CTD	PMID:32186404
PDLIM7	Human	glycidyl methacrylate	increases expression	EXP		6480464	glycidyl methacrylate results in increased expression of PDLIM7 protein	CTD	PMID:36641056
PDLIM7	Human	ivermectin	decreases expression	EXP		6480464	Ivermectin results in decreased expression of PDLIM7 protein	CTD	PMID:32959892
PDLIM7	Human	ketamine	decreases expression	ISO	RGD:628769	6480464	Ketamine results in decreased expression of PDLIM7 mRNA	CTD	PMID:20080153
PDLIM7	Human	L-methionine	multiple interactions	ISO	RGD:1332514	6480464	[Methionine deficiency co-treated with Choline deficiency co-treated with Folic Acid deficiency] results in increased expression more ...	CTD	PMID:20938992
PDLIM7	Human	lead diacetate	increases expression	EXP		6480464	lead acetate results in increased expression of PDLIM7 mRNA	CTD	PMID:38568856
PDLIM7	Human	lead(0)	decreases expression	EXP		6480464	Lead results in decreased expression of PDLIM7 mRNA	CTD	PMID:19921347
PDLIM7	Human	lead(0)	affects expression	EXP		6480464	Lead affects the expression of PDLIM7 mRNA	CTD	PMID:28903495
PDLIM7	Human	leflunomide	increases expression	EXP		6480464	leflunomide results in increased expression of PDLIM7 mRNA	CTD	PMID:28988120
PDLIM7	Human	methamphetamine	increases expression	ISO	RGD:628769	6480464	Methamphetamine results in increased expression of PDLIM7 mRNA	CTD	PMID:19564919
PDLIM7	Human	methimazole	increases expression	ISO	RGD:628769	6480464	Methimazole results in increased expression of PDLIM7 mRNA	CTD	PMID:30047161
PDLIM7	Human	methotrexate	affects response to substance	EXP		6480464	PDLIM7 protein affects the susceptibility to Methotrexate	CTD	PMID:16217747
PDLIM7	Human	methoxychlor	affects methylation	ISO	RGD:628769	6480464	Methoxychlor affects the methylation of PDLIM7 gene	CTD	PMID:35440735
PDLIM7	Human	methyl methanesulfonate	increases expression	EXP		6480464	Methyl Methanesulfonate results in increased expression of PDLIM7 mRNA	CTD	PMID:23649840
PDLIM7	Human	N-nitrosodiethylamine	increases expression	ISO	RGD:1332514	6480464	Diethylnitrosamine results in increased expression of PDLIM7 mRNA	CTD	PMID:24535843
PDLIM7	Human	nitrates	multiple interactions	ISO	RGD:1332514	6480464	[Particulate Matter results in increased abundance of Nitrates] which results in increased expression of PDLIM7 more ...	CTD	PMID:35964746
PDLIM7	Human	nitrofen	decreases expression	ISO	RGD:628769	6480464	nitrofen results in decreased expression of PDLIM7 mRNA	CTD	PMID:33484710
PDLIM7	Human	Nutlin-3	multiple interactions	EXP		6480464	[Dactinomycin co-treated with nutlin 3] results in increased secretion of PDLIM7 protein	CTD	PMID:38460933
PDLIM7	Human	O-methyleugenol	increases expression	EXP		6480464	methyleugenol results in increased expression of PDLIM7 mRNA	CTD	PMID:32234424
PDLIM7	Human	okadaic acid	increases expression	EXP		6480464	Okadaic Acid results in increased expression of PDLIM7 mRNA	CTD	PMID:38832940
PDLIM7	Human	oxaliplatin	multiple interactions	ISO	RGD:628769	6480464	[oxaliplatin co-treated with Topotecan] results in increased expression of PDLIM7 mRNA	CTD	PMID:25729387
PDLIM7	Human	ozone	multiple interactions	EXP		6480464	[Air Pollutants results in increased abundance of Ozone] which affects the expression of PDLIM7 mRNA	CTD	PMID:35430440
PDLIM7	Human	paracetamol	affects expression	ISO	RGD:1332514	6480464	Acetaminophen affects the expression of PDLIM7 mRNA	CTD	PMID:17562736
PDLIM7	Human	paracetamol	increases expression	ISO	RGD:628769	6480464	Acetaminophen results in increased expression of PDLIM7 mRNA	CTD	PMID:33387578
PDLIM7	Human	pentanal	increases expression	EXP		6480464	pentanal results in increased expression of PDLIM7 mRNA	CTD	PMID:26079696
PDLIM7	Human	perfluorooctane-1-sulfonic acid	multiple interactions	ISO	RGD:1332514	6480464	[perfluorooctane sulfonic acid co-treated with Cellulose] results in increased expression of PDLIM7 mRNA	CTD	PMID:36331819
PDLIM7	Human	perfluorooctanoic acid	increases expression	EXP		6480464	perfluorooctanoic acid results in increased expression of PDLIM7 protein	CTD	PMID:26879310
PDLIM7	Human	phenobarbital	multiple interactions	ISO	RGD:1332514	6480464	NR1I3 protein affects the reaction [Phenobarbital results in increased expression of PDLIM7 mRNA]	CTD	PMID:19482888
PDLIM7	Human	phenobarbital	increases expression	ISO	RGD:628769	6480464	Phenobarbital results in increased expression of PDLIM7 mRNA	CTD	PMID:30047161
PDLIM7	Human	phenobarbital	increases expression	ISO	RGD:1332514	6480464	Phenobarbital results in increased expression of PDLIM7 mRNA	CTD	PMID:19482888
PDLIM7	Human	progesterone	decreases expression	EXP		6480464	Progesterone results in decreased expression of PDLIM7 mRNA	CTD	PMID:18070364
PDLIM7	Human	propanal	increases expression	EXP		6480464	propionaldehyde results in increased expression of PDLIM7 mRNA	CTD	PMID:26079696
PDLIM7	Human	quercetin	increases expression	EXP		6480464	Quercetin results in increased expression of PDLIM7 mRNA	CTD	PMID:21632981
PDLIM7	Human	SB 431542	multiple interactions	EXP		6480464	[NOG protein co-treated with entinostat co-treated with dorsomorphin co-treated with 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in decreased expression more ...	CTD	PMID:27188386
PDLIM7	Human	selenium atom	increases expression	EXP		6480464	Selenium results in increased expression of PDLIM7 mRNA	CTD	PMID:19244175
PDLIM7	Human	silicon dioxide	increases expression	ISO	RGD:1332514	6480464	Silicon Dioxide results in increased expression of PDLIM7 mRNA	CTD	PMID:19073995
PDLIM7	Human	sodium arsenite	increases expression	ISO	RGD:1332514	6480464	sodium arsenite results in increased expression of PDLIM7 mRNA	CTD	PMID:25270620
PDLIM7	Human	sodium arsenite	increases expression	EXP		6480464	sodium arsenite results in increased expression of PDLIM7 mRNA	CTD	PMID:38568856
PDLIM7	Human	sodium arsenite	decreases expression	ISO	RGD:628769	6480464	sodium arsenite results in decreased expression of PDLIM7 protein	CTD	PMID:29459688
PDLIM7	Human	sodium chloride	multiple interactions	EXP		6480464	[Sodium Chloride co-treated with Furaldehyde] results in decreased expression of and affects the localization of more ...	CTD	PMID:38598786
PDLIM7	Human	Soman	increases expression	ISO	RGD:628769	6480464	Soman results in increased expression of PDLIM7 mRNA	CTD	PMID:19281266
PDLIM7	Human	succimer	multiple interactions	ISO	RGD:1332514	6480464	[Succimer co-treated with Magnetite Nanoparticles] results in increased expression of PDLIM7 mRNA	CTD	PMID:26378955
PDLIM7	Human	sulfadimethoxine	increases expression	ISO	RGD:628769	6480464	Sulfadimethoxine results in increased expression of PDLIM7 mRNA	CTD	PMID:30047161
PDLIM7	Human	sulindac	increases expression	EXP		6480464	Sulindac results in increased expression of PDLIM7 mRNA	CTD	PMID:11906190
PDLIM7	Human	sunitinib	increases expression	EXP		6480464	Sunitinib results in increased expression of PDLIM7 mRNA	CTD	PMID:31533062
PDLIM7	Human	tert-butyl hydroperoxide	increases expression	EXP		6480464	tert-Butylhydroperoxide results in increased expression of PDLIM7 mRNA	CTD	PMID:15336504
PDLIM7	Human	tetrachloromethane	affects expression	ISO	RGD:1332514	6480464	Carbon Tetrachloride affects the expression of PDLIM7 mRNA	CTD	PMID:17484886
PDLIM7	Human	tetrachloromethane	increases expression	ISO	RGD:628769	6480464	Carbon Tetrachloride results in increased expression of PDLIM7 mRNA	CTD	PMID:31150632
PDLIM7	Human	tetrachloromethane	increases expression	ISO	RGD:1332514	6480464	Carbon Tetrachloride results in increased expression of PDLIM7 mRNA	CTD	PMID:27339419\|PMID:31919559
PDLIM7	Human	tetrachloromethane	affects expression	ISO	RGD:628769	6480464	Carbon Tetrachloride affects the expression of PDLIM7 mRNA	CTD	PMID:12734012
PDLIM7	Human	thapsigargin	decreases expression	ISO	RGD:628769	6480464	Thapsigargin results in decreased expression of PDLIM7 protein	CTD	PMID:35544339
PDLIM7	Human	thioacetamide	increases expression	ISO	RGD:628769	6480464	Thioacetamide results in increased expression of PDLIM7 mRNA	CTD	PMID:34492290
PDLIM7	Human	thiram	increases expression	EXP		6480464	Thiram results in increased expression of PDLIM7 mRNA	CTD	PMID:38568856
PDLIM7	Human	titanium dioxide	increases expression	ISO	RGD:1332514	6480464	titanium dioxide results in increased expression of PDLIM7 mRNA	CTD	PMID:27760801
PDLIM7	Human	titanium dioxide	decreases methylation	ISO	RGD:1332514	6480464	titanium dioxide results in decreased methylation of PDLIM7 gene	CTD	PMID:35295148
PDLIM7	Human	topotecan	multiple interactions	ISO	RGD:628769	6480464	[oxaliplatin co-treated with Topotecan] results in increased expression of PDLIM7 mRNA	CTD	PMID:25729387
PDLIM7	Human	trichostatin A	decreases expression	EXP		6480464	trichostatin A results in decreased expression of PDLIM7 mRNA	CTD	PMID:24935251
PDLIM7	Human	triphenyl phosphate	affects expression	EXP		6480464	triphenyl phosphate affects the expression of PDLIM7 mRNA	CTD	PMID:37042841
PDLIM7	Human	triptonide	increases expression	ISO	RGD:1332514	6480464	triptonide results in increased expression of PDLIM7 mRNA	CTD	PMID:33045310
PDLIM7	Human	troglitazone	increases expression	EXP		6480464	troglitazone results in increased expression of PDLIM7 mRNA	CTD	PMID:19140230
PDLIM7	Human	valproic acid	increases methylation	EXP		6480464	Valproic Acid results in increased methylation of PDLIM7 gene	CTD	PMID:29154799
PDLIM7	Human	valproic acid	multiple interactions	EXP		6480464	[NOG protein co-treated with Valproic Acid co-treated with dorsomorphin co-treated with 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in decreased more ...	CTD	PMID:27188386
PDLIM7	Human	valproic acid	decreases expression	EXP		6480464	Valproic Acid results in decreased expression of PDLIM7 mRNA	CTD	PMID:24383497\|PMID:24935251\|PMID:26272509
PDLIM7	Human	vitamin E	increases expression	EXP		6480464	Vitamin E results in increased expression of PDLIM7 mRNA	CTD	PMID:19244175
PDLIM7	Human	zinc sulfate	decreases expression	EXP		6480464	Zinc Sulfate results in decreased expression of PDLIM7 mRNA	CTD	PMID:16330358
PDLIM7	Human	zoledronic acid	increases expression	EXP		6480464	zoledronic acid results in increased expression of PDLIM7 mRNA	CTD	PMID:20977926

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
PDLIM7	Human	actin cytoskeleton organization	involved_in	IBA	FB:FBgn0035917\|FB:FBgn0036044\|FB:FBgn0265991\|MGI:1344412\|MGI:1859274\|MGI:1914649\|PANTHER:PTN001198141\|RGD:3575\|RGD:68324\|UniProtKB:P50479	150520179		GO_Central	GO_REF:0000033
PDLIM7	Human	actin cytoskeleton organization	acts_upstream_of_or_within	IEA	UniProtKB:Q3TJD7\|ensembl:ENSMUSP00000047173	150520179		Ensembl	GO_REF:0000107
PDLIM7	Human	cell differentiation	involved_in	IEA	UniProtKB-KW:KW-0221	150520179		UniProt	GO_REF:0000043
PDLIM7	Human	heart development	involved_in	IBA	MGI:1859274\|PANTHER:PTN002383542\|RGD:621076\|UniProtKB:A0A8M9Q9Y7\|ZFIN:ZDB-GENE-040426-2092	150520179		GO_Central	GO_REF:0000033
PDLIM7	Human	muscle structure development	involved_in	IBA	FB:FBgn0035917\|FB:FBgn0036044\|FB:FBgn0265991\|MGI:1344412\|PANTHER:PTN001198141\|RGD:621076\|UniProtKB:A0A8M9Q9Y7	150520179		GO_Central	GO_REF:0000033
PDLIM7	Human	ossification	involved_in	IEA	UniProtKB-KW:KW-0892	150520179		UniProt	GO_REF:0000043
PDLIM7	Human	positive regulation of osteoblast differentiation		ISO	RGD:628769	9068941		RGD	PMID:9832452\|REF_RGD_ID:632731
PDLIM7	Human	receptor-mediated endocytosis	involved_in	TAS		150520179	PMID:7929196	PINC	PMID:7929196

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
PDLIM7	Human	actin cytoskeleton	located_in	IDA		150520179		HPA	GO_REF:0000052
PDLIM7	Human	adherens junction	located_in	IDA		150520179	PMID:25468996	BHF-UCL	PMID:25468996
PDLIM7	Human	adherens junction	is_active_in	IBA	FB:FBgn0265991\|PANTHER:PTN001198141\|UniProtKB:Q9NR12	150520179		GO_Central	GO_REF:0000033
PDLIM7	Human	cytoplasm	located_in	IEA	UniProtKB:Q3TJD7\|ensembl:ENSMUSP00000047173	150520179		Ensembl	GO_REF:0000107
PDLIM7	Human	cytoplasm	located_in	IEA	UniProtKB-SubCell:SL-0086	150520179		UniProt	GO_REF:0000044
PDLIM7	Human	cytoplasm	located_in	IEA	UniProtKB-KW:KW-0963	150520179		UniProt	GO_REF:0000043
PDLIM7	Human	cytoskeleton	located_in	IEA	UniProtKB-KW:KW-0206	150520179		UniProt	GO_REF:0000043
PDLIM7	Human	cytoskeleton	located_in	IEA	UniProtKB-SubCell:SL-0090	150520179		UniProt	GO_REF:0000044
PDLIM7	Human	cytosol	located_in	TAS		150520179		Reactome	Reactome:R-HSA-8855915
PDLIM7	Human	filamentous actin	part_of	IBA	PANTHER:PTN001198141\|UniProtKB:P50479\|UniProtKB:Q679P3\|ZFIN:ZDB-GENE-040426-2092	150520179		GO_Central	GO_REF:0000033
PDLIM7	Human	focal adhesion	located_in	IDA		150520179		HPA	GO_REF:0000052
PDLIM7	Human	nucleoplasm	located_in	IDA		150520179		HPA	GO_REF:0000052
PDLIM7	Human	ruffle	located_in	IEA	UniProtKB:Q3TJD7\|ensembl:ENSMUSP00000047173	150520179		Ensembl	GO_REF:0000107
PDLIM7	Human	stress fiber	is_active_in	IBA	FB:FBgn0265991\|MGI:1914649\|PANTHER:PTN001198141\|RGD:1359203\|RGD:3575\|RGD:68324\|UniProtKB:O00151\|UniProtKB:P50479\|UniProtKB:Q679P3\|UniProtKB:Q9PU47	150520179		GO_Central	GO_REF:0000033
PDLIM7	Human	stress fiber	located_in	IEA	UniProtKB:Q3TJD7\|ensembl:ENSMUSP00000047173	150520179		Ensembl	GO_REF:0000107
PDLIM7	Human	Z disc	is_active_in	IBA	FB:FBgn0035917\|FB:FBgn0265991\|MGI:1344412\|MGI:1927489\|PANTHER:PTN001198150\|RGD:1564875\|RGD:620427\|RGD:68324\|UniProtKB:O00151\|UniProtKB:O75112\|UniProtKB:Q9PU47	150520179		GO_Central	GO_REF:0000033

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
PDLIM7	Human	actin binding	enables	IBA	FB:FBgn0265991\|PANTHER:PTN001198141\|RGD:621076\|RGD:68324\|UniProtKB:Q9PW72	150520179		GO_Central	GO_REF:0000033
PDLIM7	Human	metal ion binding	enables	IEA	UniProtKB-KW:KW-0479	150520179		UniProt	GO_REF:0000043
PDLIM7	Human	muscle alpha-actinin binding	enables	IBA	FB:FBgn0035917\|FB:FBgn0265991\|MGI:1344412\|PANTHER:PTN001198141\|RGD:1359203	150520179		GO_Central	GO_REF:0000033
PDLIM7	Human	protein binding	enables	IPI	UniProtKB:O95817	150520179	PMID:25036637, PMID:33961781	IntAct	PMID:25036637\|PMID:33961781
PDLIM7	Human	protein binding	enables	IPI	UniProtKB:O95817\|UniProtKB:Q99816	150520179	PMID:28514442	IntAct	PMID:28514442
PDLIM7	Human	protein binding	enables	IPI	UniProtKB:O00308	150520179	PMID:29892012	IntAct	PMID:29892012
PDLIM7	Human	protein binding	enables	IPI	UniProtKB:O00308\|UniProtKB:P55040\|UniProtKB:Q9H0I2	150520179	PMID:16189514	IntAct	PMID:16189514
PDLIM7	Human	protein binding	enables	IPI	UniProtKB:O00308\|UniProtKB:O43189\|UniProtKB:P55040	150520179	PMID:31515488	IntAct	PMID:31515488
PDLIM7	Human	protein binding	enables	IPI	UniProtKB:A4QPB0\|UniProtKB:O00308\|UniProtKB:O43189\|UniProtKB:Q99816	150520179	PMID:25416956	IntAct	PMID:25416956
PDLIM7	Human	protein binding	enables	IPI	UniProtKB:P09022	150520179	PMID:23088713	IntAct	PMID:23088713
PDLIM7	Human	protein binding	enables	IPI	UniProtKB:O14787-2\|UniProtKB:O43559\|UniProtKB:O75031\|UniProtKB:O95817\|UniProtKB:P26196\|UniProtKB:P52597\|UniProtKB:P55040\|UniProtKB:Q0VAM2-3\|UniProtKB:Q13526\|UniProtKB:Q14005-2\|UniProtKB:Q3SY00\|UniProtKB:Q494U1-3\|UniProtKB:Q63ZY3\|UniProtKB:Q7L5A3\|UniProtKB:Q7L8S5\|UniProtKB:Q86YD7\|UniProtKB:Q8ND83\|UniProtKB:Q8NEC5\|UniProtKB:Q8NEG0\|UniProtKB:Q8NFP7\|UniProtKB:Q8NFT8\|UniProtKB:Q99816\|UniProtKB:Q9BUL9\|UniProtKB:Q9BWG6\|UniProtKB:Q9H0I2\|UniProtKB:Q9HBI0\|UniProtKB:Q9NWQ4-1\|UniProtKB:Q9NYB9-2\|UniProtKB:Q9UBP5\|UniProtKB:Q9UBY9\|UniProtKB:Q9Y242	150520179	PMID:32296183	IntAct	PMID:32296183
PDLIM7	Human	protein binding	enables	IPI	UniProtKB:Q9NRR5	150520179	PMID:16713569	IntAct	PMID:16713569

#	Reference Title	Reference Citation
1.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

PMID:7929196	PMID:8940095	PMID:9528800	PMID:10359609	PMID:10704826	PMID:11874232	PMID:12176011	PMID:12477932	PMID:14702039	PMID:15231747	PMID:15231748	PMID:15489334
PMID:15635413	PMID:15946664	PMID:16189514	PMID:16382137	PMID:16446357	PMID:16611643	PMID:16713569	PMID:16803868	PMID:17126496	PMID:17510966	PMID:17805464	PMID:18029348
PMID:18215669	PMID:18395833	PMID:18412141	PMID:18618069	PMID:18989571	PMID:19269113	PMID:19379743	PMID:20348040	PMID:20360068	PMID:20467437	PMID:20636447	PMID:20732415
PMID:21060154	PMID:21061915	PMID:21150319	PMID:21516116	PMID:21864338	PMID:21873635	PMID:21988832	PMID:22241179	PMID:22417000	PMID:22658674	PMID:22810586	PMID:22939629
PMID:22982077	PMID:23088713	PMID:23097599	PMID:23824909	PMID:24078030	PMID:24140708	PMID:24255178	PMID:24466333	PMID:24711643	PMID:24722188	PMID:24762763	PMID:25036637
PMID:25071155	PMID:25124035	PMID:25336289	PMID:25416956	PMID:25468996	PMID:25641592	PMID:25662211	PMID:25760809	PMID:25796446	PMID:26186194	PMID:26496610	PMID:26556890
PMID:26638075	PMID:26673895	PMID:26972000	PMID:27173435	PMID:27432908	PMID:27470516	PMID:27545878	PMID:27684187	PMID:27880917	PMID:27903798	PMID:28378594	PMID:28514442
PMID:28718761	PMID:29180619	PMID:29395067	PMID:29467282	PMID:29509190	PMID:29789718	PMID:29848705	PMID:29892012	PMID:29955039	PMID:30356034	PMID:30404826	PMID:30453092
PMID:30572598	PMID:30865227	PMID:30884312	PMID:30979931	PMID:31048545	PMID:31091453	PMID:31324722	PMID:31332168	PMID:31340145	PMID:31515488	PMID:31519766	PMID:31527615
PMID:31586073	PMID:31636387	PMID:31732153	PMID:31762063	PMID:31839598	PMID:31980649	PMID:32296183	PMID:32687490	PMID:32850835	PMID:33022573	PMID:33277362	PMID:33397691
PMID:33414896	PMID:33644029	PMID:33658012	PMID:33729478	PMID:33961781	PMID:34079125	PMID:34369648	PMID:34597346	PMID:34702444	PMID:35013218	PMID:35044719	PMID:35256949
PMID:35271311	PMID:35384245	PMID:35563538	PMID:35831314	PMID:35896296	PMID:36215168	PMID:36232890	PMID:36423735	PMID:36424410	PMID:36597993	PMID:37222327	PMID:37314216
PMID:37381005	PMID:37478010	PMID:37689310	PMID:37774976	PMID:38132395	PMID:38243825	PMID:38280479	PMID:39098523

PDLIM7
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	5	177,483,394 - 177,497,604 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	5	177,483,394 - 177,497,606 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	5	176,910,395 - 176,924,605 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	5	176,843,001 - 176,857,208 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	5	171,577,128 - 171,591,311 (+)	NCBI		Celera
Cytogenetic Map	5	q35.3	NCBI
HuRef	5	171,830,716 - 171,845,067 (-)	NCBI		HuRef
CHM1_1	5	176,343,378 - 176,357,560 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	5	178,026,382 - 178,040,598 (-)	NCBI		T2T-CHM13v2.0

Pdlim7
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	13	55,645,300 - 55,661,281 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	13	55,643,608 - 55,661,489 (-)	Ensembl		GRCm39 Ensembl
GRCm38	13	55,497,487 - 55,513,473 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	13	55,495,795 - 55,513,676 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	13	55,598,848 - 55,614,800 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	13	55,516,395 - 55,523,056 (-)	NCBI		MGSCv36	mm8
Celera	13	56,551,572 - 56,567,561 (-)	NCBI		Celera
Cytogenetic Map	13	B1	NCBI
cM Map	13	30.06	NCBI

Pdlim7
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	17	9,129,603 - 9,144,956 (+)	NCBI		GRCr8
mRatBN7.2	17	9,124,565 - 9,139,814 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	17	9,124,649 - 9,139,811 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	17	9,140,638 - 9,155,826 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	17	10,670,658 - 10,685,851 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	17	9,137,028 - 9,152,216 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	17	9,653,510 - 9,668,715 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	17	9,653,561 - 9,668,712 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	17	11,762,249 - 11,777,443 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	17	15,168,835 - 15,183,983 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	17	15,168,834 - 15,183,983 (+)	NCBI
Celera	17	9,203,215 - 9,218,359 (+)	NCBI		Celera
Cytogenetic Map	17	p14	NCBI

Pdlim7
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955408	29,718,644 - 29,734,085 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955408	29,718,830 - 29,734,085 (-)	NCBI	ChiLan1.0	ChiLan1.0

PDLIM7
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	4	172,567,266 - 172,581,487 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	5	170,706,807 - 170,721,024 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	5	172,784,656 - 172,798,875 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	5	179,846,476 - 179,860,619 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	5	179,846,476 - 179,860,619 (-)	Ensembl	panpan1.1		panPan2

PDLIM7
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	4	35,874,183 - 35,890,231 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	4	35,841,918 - 35,857,812 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	4	36,240,900 - 36,256,792 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	4	36,240,908 - 36,279,633 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	4	36,066,250 - 36,082,139 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	4	36,252,234 - 36,268,122 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	4	36,761,604 - 36,777,497 (+)	NCBI		UU_Cfam_GSD_1.0

Pdlim7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	122,734,771 - 122,748,494 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936597	1,759,555 - 1,773,424 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936597	1,759,676 - 1,773,335 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PDLIM7
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	80,452,706 - 80,472,658 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	80,453,013 - 80,472,660 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

PDLIM7
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	23	79,494,695 - 79,508,950 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	23	79,493,927 - 79,508,714 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666075	10,687,138 - 10,701,197 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Pdlim7
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624733	12,591,883 - 12,607,992 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624733	12,591,883 - 12,607,992 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in PDLIM7
53 total Variants

Name	Type	Condition(s)	Position(s)	Clinical significance
GRCh38/hg38 5q35.2-35.3(chr5:176132340-177586960)x1	copy number loss	See cases [RCV000050645]	Chr5:176132340..177586960 [GRCh38] Chr5:175559343..177013961 [GRCh37] Chr5:175491949..176946567 [NCBI36] Chr5:5q35.2-35.3	pathogenic
GRCh38/hg38 5q32-35.3(chr5:149714592-181272151)x3	copy number gain	See cases [RCV000051863]	Chr5:149714592..181272151 [GRCh38] Chr5:149094155..180699152 [GRCh37] Chr5:149074348..180631758 [NCBI36] Chr5:5q32-35.3	pathogenic
GRCh38/hg38 5q33.3-35.3(chr5:160029980-181269805)x3	copy number gain	Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051865]\|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051865]\|See cases [RCV000051865]	Chr5:160029980..181269805 [GRCh38] Chr5:159456987..180696806 [GRCh37] Chr5:159389565..180629412 [NCBI36] Chr5:5q33.3-35.3	pathogenic
GRCh38/hg38 5q34-35.3(chr5:168689326-181269946)x3	copy number gain	See cases [RCV000051866]	Chr5:168689326..181269946 [GRCh38] Chr5:168116331..180696947 [GRCh37] Chr5:168048909..180629553 [NCBI36] Chr5:5q34-35.3	pathogenic
GRCh38/hg38 5q35.2-35.3(chr5:175851047-178365049)x3	copy number gain	See cases [RCV000051867]	Chr5:175851047..178365049 [GRCh38] Chr5:175278050..177792050 [GRCh37] Chr5:175210656..177724656 [NCBI36] Chr5:5q35.2-35.3	pathogenic
GRCh38/hg38 5q35.2-35.3(chr5:175889986-180793986)x3	copy number gain	See cases [RCV000051868]	Chr5:175889986..180793986 [GRCh38] Chr5:175316989..180220986 [GRCh37] Chr5:175249595..180153592 [NCBI36] Chr5:5q35.2-35.3	pathogenic
GRCh38/hg38 5q35.2-35.3(chr5:175007241-179089812)x1	copy number loss	See cases [RCV000052151]	Chr5:175007241..179089812 [GRCh38] Chr5:174434244..178516813 [GRCh37] Chr5:174366850..178449419 [NCBI36] Chr5:5q35.2-35.3	pathogenic
GRCh38/hg38 5q35.2-35.3(chr5:176043476-177995759)x1	copy number loss	See cases [RCV000053127]	Chr5:176043476..177995759 [GRCh38] Chr5:175470479..177422760 [GRCh37] Chr5:175403085..177355366 [NCBI36] Chr5:5q35.2-35.3	pathogenic
GRCh38/hg38 5q35.2-35.3(chr5:176115257-177646633)x1	copy number loss	See cases [RCV000053128]	Chr5:176115257..177646633 [GRCh38] Chr5:175542260..177073634 [GRCh37] Chr5:175474866..177006240 [NCBI36] Chr5:5q35.2-35.3	pathogenic
GRCh38/hg38 5q35.2-35.3(chr5:176152073-177986213)x1	copy number loss	See cases [RCV000053129]	Chr5:176152073..177986213 [GRCh38] Chr5:175579076..177413214 [GRCh37] Chr5:175511682..177345820 [NCBI36] Chr5:5q35.2-35.3	pathogenic
GRCh38/hg38 5q35.2-35.3(chr5:176152073-177646633)x1	copy number loss	See cases [RCV000053131]	Chr5:176152073..177646633 [GRCh38] Chr5:175579076..177073634 [GRCh37] Chr5:175511682..177006240 [NCBI36] Chr5:5q35.2-35.3	pathogenic
GRCh38/hg38 5q35.2-35.3(chr5:176149599-177716401)x3	copy number gain	See cases [RCV000053481]	Chr5:176149599..177716401 [GRCh38] Chr5:175576602..177143402 [GRCh37] Chr5:175509208..177076008 [NCBI36] Chr5:5q35.2-35.3	pathogenic\|uncertain significance
GRCh38/hg38 5q33.3-35.3(chr5:156825512-181269805)x3	copy number gain	See cases [RCV000133847]	Chr5:156825512..181269805 [GRCh38] Chr5:156252523..180696806 [GRCh37] Chr5:156185101..180629412 [NCBI36] Chr5:5q33.3-35.3	pathogenic
GRCh38/hg38 5q34-35.3(chr5:164386701-181269805)x3	copy number gain	See cases [RCV000135546]	Chr5:164386701..181269805 [GRCh38] Chr5:163813707..180696806 [GRCh37] Chr5:163746285..180629412 [NCBI36] Chr5:5q34-35.3	pathogenic
GRCh38/hg38 5q35.3(chr5:177261458-177651722)x3	copy number gain	See cases [RCV000138817]	Chr5:177261458..177651722 [GRCh38] Chr5:176688459..177078723 [GRCh37] Chr5:176621065..177011329 [NCBI36] Chr5:5q35.3	likely benign\|uncertain significance
GRCh38/hg38 5q35.1-35.3(chr5:169334755-181285301)x3	copy number gain	See cases [RCV000141249]	Chr5:169334755..181285301 [GRCh38] Chr5:168761759..180712302 [GRCh37] Chr5:168694337..180644908 [NCBI36] Chr5:5q35.1-35.3	pathogenic
GRCh38/hg38 5q35.2-35.3(chr5:175536771-181292788)x1	copy number loss	See cases [RCV000141987]	Chr5:175536771..181292788 [GRCh38] Chr5:174963774..180719789 [GRCh37] Chr5:174896380..180652395 [NCBI36] Chr5:5q35.2-35.3	pathogenic
GRCh38/hg38 5q35.2-35.3(chr5:175989092-178009412)x1	copy number loss	See cases [RCV000142365]	Chr5:175989092..178009412 [GRCh38] Chr5:175416095..177436413 [GRCh37] Chr5:175348701..177369019 [NCBI36] Chr5:5q35.2-35.3	pathogenic
GRCh38/hg38 5q35.2-35.3(chr5:176132340-177995759)x1	copy number loss	See cases [RCV000142510]	Chr5:176132340..177995759 [GRCh38] Chr5:175559343..177422760 [GRCh37] Chr5:175491949..177355366 [NCBI36] Chr5:5q35.2-35.3	pathogenic
GRCh38/hg38 5q35.2-35.3(chr5:176291838-178662699)x1	copy number loss	See cases [RCV000142047]	Chr5:176291838..178662699 [GRCh38] Chr5:175718841..178089700 [GRCh37] Chr5:175651447..178022306 [NCBI36] Chr5:5q35.2-35.3	pathogenic
GRCh38/hg38 5q35.2-35.3(chr5:176700128-181269805)x1	copy number loss	See cases [RCV000142648]	Chr5:176700128..181269805 [GRCh38] Chr5:176127129..180696806 [GRCh37] Chr5:176059735..180629412 [NCBI36] Chr5:5q35.2-35.3	pathogenic
GRCh38/hg38 5q35.2-35.3(chr5:176517339-177709289)x1	copy number loss	See cases [RCV000142538]	Chr5:176517339..177709289 [GRCh38] Chr5:175944340..177136290 [GRCh37] Chr5:175876946..177068896 [NCBI36] Chr5:5q35.2-35.3	pathogenic
GRCh38/hg38 5q35.2-35.3(chr5:176143674-178009412)x1	copy number loss	See cases [RCV000143463]	Chr5:176143674..178009412 [GRCh38] Chr5:175570677..177436413 [GRCh37] Chr5:175503283..177369019 [NCBI36] Chr5:5q35.2-35.3	pathogenic
GRCh37/hg19 5q35.2-35.3(chr5:174397487-180686444)x1	copy number loss	See cases [RCV000167565]	Chr5:174397487..180686444 [GRCh37] Chr5:5q35.2-35.3	pathogenic
GRCh37/hg19 5q35.2-35.3(chr5:174990352-180690937)	copy number gain	not provided [RCV000767711]	Chr5:174990352..180690937 [GRCh37] Chr5:5q35.2-35.3	pathogenic
GRCh37/hg19 5q15-35.3(chr5:94844077-178830410)x3	copy number gain	not provided [RCV000487658]	Chr5:94844077..178830410 [GRCh37] Chr5:5q15-35.3	likely benign
GRCh37/hg19 5q35.2-35.3(chr5:176274007-180719789)x1	copy number loss	See cases [RCV000447018]	Chr5:176274007..180719789 [GRCh37] Chr5:5q35.2-35.3	pathogenic
GRCh37/hg19 5p15.33-q35.3(chr5:113577-180719789)	copy number gain	See cases [RCV000510723]	Chr5:113577..180719789 [GRCh37] Chr5:5p15.33-q35.3	pathogenic
GRCh37/hg19 5q35.2-35.3(chr5:175722788-177423091)x3	copy number gain	See cases [RCV000445774]	Chr5:175722788..177423091 [GRCh37] Chr5:5q35.2-35.3	pathogenic
GRCh37/hg19 5q35.2-35.3(chr5:176505173-178230923)x1	copy number loss	See cases [RCV000445817]	Chr5:176505173..178230923 [GRCh37] Chr5:5q35.2-35.3	pathogenic
GRCh37/hg19 5q35.2-35.3(chr5:174427052-180719789)x1	copy number loss	See cases [RCV000448611]	Chr5:174427052..180719789 [GRCh37] Chr5:5q35.2-35.3	pathogenic
GRCh37/hg19 5q35.2-35.3(chr5:175601473-180100378)x1	copy number loss	See cases [RCV000448793]	Chr5:175601473..180100378 [GRCh37] Chr5:5q35.2-35.3	pathogenic
GRCh37/hg19 5q21.3-35.3(chr5:106716357-180687338)x3	copy number gain	See cases [RCV000448245]	Chr5:106716357..180687338 [GRCh37] Chr5:5q21.3-35.3	pathogenic
GRCh37/hg19 5q35.1-35.3(chr5:171396359-180719789)x3	copy number gain	See cases [RCV000448458]	Chr5:171396359..180719789 [GRCh37] Chr5:5q35.1-35.3	pathogenic
GRCh37/hg19 5q35.1-35.3(chr5:172031248-180719789)x3	copy number gain	See cases [RCV000512068]	Chr5:172031248..180719789 [GRCh37] Chr5:5q35.1-35.3	pathogenic
GRCh37/hg19 5q35.2-35.3(chr5:175438045-177392885)x1	copy number loss	See cases [RCV000511974]	Chr5:175438045..177392885 [GRCh37] Chr5:5q35.2-35.3	pathogenic
GRCh37/hg19 5p15.33-q35.3(chr5:113577-180719789)x3	copy number gain	See cases [RCV000512039]	Chr5:113577..180719789 [GRCh37] Chr5:5p15.33-q35.3	pathogenic
GRCh37/hg19 5q35.2-35.3(chr5:175570677-177439550)x3	copy number gain	See cases [RCV000511393]	Chr5:175570677..177439550 [GRCh37] Chr5:5q35.2-35.3	pathogenic
GRCh37/hg19 5q35.2-35.3(chr5:175570677-180719789)x1	copy number loss	See cases [RCV000510785]	Chr5:175570677..180719789 [GRCh37] Chr5:5q35.2-35.3	pathogenic
Single allele	duplication	not provided [RCV000768450]	Chr5:175843728..180703728 [GRCh37] Chr5:5q35.2-35.3	likely pathogenic
NM_005451.5(PDLIM7):c.1160A>G (p.Tyr387Cys)	single nucleotide variant	not specified [RCV004306948]	Chr5:177484081 [GRCh38] Chr5:176911082 [GRCh37] Chr5:5q35.3	uncertain significance
GRCh37/hg19 5q35.2-35.3(chr5:175570678-177437340)x1	copy number loss	See cases [RCV000512405]	Chr5:175570678..177437340 [GRCh37] Chr5:5q35.2-35.3	pathogenic
GRCh37/hg19 5q35.2-35.3(chr5:175438045-177481250)x1	copy number loss	not provided [RCV000682614]	Chr5:175438045..177481250 [GRCh37] Chr5:5q35.2-35.3	pathogenic
GRCh37/hg19 5q35.2-35.3(chr5:175570677-177436413)x1	copy number loss	not provided [RCV000682615]	Chr5:175570677..177436413 [GRCh37] Chr5:5q35.2-35.3	pathogenic
GRCh37/hg19 5q35.2-35.3(chr5:176044976-177023859)x1	copy number loss	not provided [RCV000682618]	Chr5:176044976..177023859 [GRCh37] Chr5:5q35.2-35.3	pathogenic
GRCh37/hg19 5q35.3(chr5:176918345-179061393)x1	copy number loss	not provided [RCV000682619]	Chr5:176918345..179061393 [GRCh37] Chr5:5q35.3	pathogenic
Single allele	duplication	not provided [RCV000677989]	Chr5:176798338..177423150 [GRCh37] Chr5:5q35.3	uncertain significance
GRCh37/hg19 5p15.33-q35.3(chr5:13648-180905029)x3	copy number gain	not provided [RCV000744317]	Chr5:13648..180905029 [GRCh37] Chr5:5p15.33-q35.3	pathogenic
GRCh37/hg19 5p15.33-q35.3(chr5:25328-180693344)x3	copy number gain	not provided [RCV000744323]	Chr5:25328..180693344 [GRCh37] Chr5:5p15.33-q35.3	pathogenic
GRCh37/hg19 5q33.2-35.3(chr5:155344802-180693344)x3	copy number gain	not provided [RCV000745284]	Chr5:155344802..180693344 [GRCh37] Chr5:5q33.2-35.3	pathogenic
GRCh37/hg19 5q35.2-35.3(chr5:174832617-180693344)x3	copy number gain	not provided [RCV000745336]	Chr5:174832617..180693344 [GRCh37] Chr5:5q35.2-35.3	pathogenic
GRCh37/hg19 5q35.2-35.3(chr5:175346223-177423236)x1	copy number loss	not provided [RCV000745338]	Chr5:175346223..177423236 [GRCh37] Chr5:5q35.2-35.3	pathogenic
GRCh37/hg19 5q35.2-35.3(chr5:175433876-177441189)x1	copy number loss	not provided [RCV000745339]	Chr5:175433876..177441189 [GRCh37] Chr5:5q35.2-35.3	pathogenic
GRCh37/hg19 5q35.2-35.3(chr5:176305543-177422876)	copy number gain	not provided [RCV000767712]	Chr5:176305543..177422876 [GRCh37] Chr5:5q35.2-35.3	pathogenic
NM_005451.5(PDLIM7):c.708G>A (p.Pro236=)	single nucleotide variant	not provided [RCV000965200]	Chr5:177489554 [GRCh38] Chr5:176916555 [GRCh37] Chr5:5q35.3	benign
NM_005451.5(PDLIM7):c.477G>A (p.Pro159=)	single nucleotide variant	not provided [RCV000901601]	Chr5:177491068 [GRCh38] Chr5:176918069 [GRCh37] Chr5:5q35.3	benign
NM_005451.5(PDLIM7):c.1086G>T (p.Val362=)	single nucleotide variant	not provided [RCV000893785]	Chr5:177484155 [GRCh38] Chr5:176911156 [GRCh37] Chr5:5q35.3	benign
GRCh37/hg19 5q35.3(chr5:176774402-177064884)x4	copy number gain	not provided [RCV000848335]	Chr5:176774402..177064884 [GRCh37] Chr5:5q35.3	uncertain significance
GRCh37/hg19 5q35.3(chr5:176848982-180719789)x3	copy number gain	not provided [RCV000847220]	Chr5:176848982..180719789 [GRCh37] Chr5:5q35.3	pathogenic
GRCh37/hg19 5q35.2-35.3(chr5:175570677-177439550)x3	copy number gain	not provided [RCV000846148]	Chr5:175570677..177439550 [GRCh37] Chr5:5q35.2-35.3	pathogenic
GRCh37/hg19 5q35.3(chr5:176643613-179085551)x3	copy number gain	not provided [RCV000846590]	Chr5:176643613..179085551 [GRCh37] Chr5:5q35.3	uncertain significance
Single allele	deletion	Marfanoid habitus and intellectual disability [RCV000851176]	Chr5:175875407..177036017 [GRCh37] Chr5:5q35.2-35.3	likely pathogenic
GRCh37/hg19 5q35.3(chr5:176732536-177260046)x1	copy number loss	not provided [RCV000845642]	Chr5:176732536..177260046 [GRCh37] Chr5:5q35.3	uncertain significance
NC_000005.9:g.(?_176289625)_(177151363_?)del	deletion	Sotos syndrome [RCV003232856]\|not provided [RCV003113198]	Chr5:176289625..177151363 [GRCh37] Chr5:5q35.2-35.3	pathogenic\|no classifications from unflagged records
NM_005451.5(PDLIM7):c.694G>C (p.Glu232Gln)	single nucleotide variant	not specified [RCV004289031]	Chr5:177489568 [GRCh38] Chr5:176916569 [GRCh37] Chr5:5q35.3	uncertain significance
NM_005451.5(PDLIM7):c.536-8C>T	single nucleotide variant	not provided [RCV000909366]	Chr5:177490914 [GRCh38] Chr5:176917915 [GRCh37] Chr5:5q35.3	benign
NM_005451.5(PDLIM7):c.798C>T (p.Ala266=)	single nucleotide variant	not provided [RCV000897906]	Chr5:177489464 [GRCh38] Chr5:176916465 [GRCh37] Chr5:5q35.3	benign
NM_005451.5(PDLIM7):c.1302C>T (p.Asn434=)	single nucleotide variant	not provided [RCV000890356]	Chr5:177483716 [GRCh38] Chr5:176910717 [GRCh37] Chr5:5q35.3	benign
GRCh37/hg19 5q35.3(chr5:176718361-176957659)x3	copy number gain	not provided [RCV002472682]	Chr5:176718361..176957659 [GRCh37] Chr5:5q35.3	uncertain significance
GRCh37/hg19 5q35.3(chr5:176616151-177107778)x3	copy number gain	not provided [RCV002472763]	Chr5:176616151..177107778 [GRCh37] Chr5:5q35.3	uncertain significance
GRCh37/hg19 5q35.2-35.3(chr5:175346695-177469711)x1	copy number loss	Sotos syndrome [RCV003232270]	Chr5:175346695..177469711 [GRCh37] Chr5:5q35.2-35.3	pathogenic
GRCh37/hg19 5q35.2-35.3(chr5:175570677-177114151)x3	copy number gain	not provided [RCV001258712]	Chr5:175570677..177114151 [GRCh37] Chr5:5q35.2-35.3	pathogenic
GRCh37/hg19 5q35.2-35.3(chr5:175394616-177436413)x3	copy number gain	not provided [RCV001258713]	Chr5:175394616..177436413 [GRCh37] Chr5:5q35.2-35.3	pathogenic
GRCh37/hg19 5q35.1-35.3(chr5:170805664-180719789)x3	copy number gain	5q35 microduplication syndrome [RCV001263227]	Chr5:170805664..180719789 [GRCh37] Chr5:5q35.1-35.3	pathogenic
GRCh37/hg19 5q35.2-35.3(chr5:176497464-177776599)x3	copy number gain	not provided [RCV001832980]	Chr5:176497464..177776599 [GRCh37] Chr5:5q35.2-35.3	pathogenic\|likely pathogenic
GRCh37/hg19 5q32-35.3(chr5:149010383-180719789)	copy number gain	Hunter-McAlpine craniosynostosis [RCV002280612]	Chr5:149010383..180719789 [GRCh37] Chr5:5q32-35.3	pathogenic
NC_000005.9:g.(?_176047812)_(177422934_?)del	deletion	Ehlers-Danlos syndrome progeroid type [RCV001931790]	Chr5:176047812..177422934 [GRCh37] Chr5:5q35.2-35.3	uncertain significance
NC_000005.9:g.(?_176047812)_(177422934_?)dup	duplication	Ehlers-Danlos syndrome progeroid type [RCV001883344]\|not provided [RCV001879660]	Chr5:176047812..177422934 [GRCh37] Chr5:5q35.2-35.3	uncertain significance
NC_000005.9:g.(?_175158654)_(179263593_?)dup	duplication	Ehlers-Danlos syndrome, dermatosparaxis type [RCV003116717]\|Sotos syndrome [RCV003232857]\|not provided [RCV003154288]	Chr5:175158654..179263593 [GRCh37] Chr5:5q35.2-35.3	uncertain significance\|no classifications from unflagged records
NC_000005.9:g.(?_176618865)_(177036696_?)dup	duplication	Sotos syndrome [RCV003232859]	Chr5:176618865..177036696 [GRCh37] Chr5:5q35.3	uncertain significance
NM_005451.5(PDLIM7):c.382G>T (p.Ala128Ser)	single nucleotide variant	not specified [RCV004317023]	Chr5:177491823 [GRCh38] Chr5:176918824 [GRCh37] Chr5:5q35.3	uncertain significance
GRCh37/hg19 5q35.1-35.3(chr5:170350336-180719789)x3	copy number gain	See cases [RCV002292398]	Chr5:170350336..180719789 [GRCh37] Chr5:5q35.1-35.3	pathogenic
NM_005451.5(PDLIM7):c.711C>G (p.Asp237Glu)	single nucleotide variant	not specified [RCV004320951]	Chr5:177489551 [GRCh38] Chr5:176916552 [GRCh37] Chr5:5q35.3	uncertain significance
GRCh37/hg19 5q35.2-35.3(chr5:176516440-177773252)x3	copy number gain	not provided [RCV002474595]	Chr5:176516440..177773252 [GRCh37] Chr5:5q35.2-35.3	likely pathogenic
GRCh37/hg19 5q35.2-35.3(chr5:176547912-177126647)x3	copy number gain	not provided [RCV002472528]	Chr5:176547912..177126647 [GRCh37] Chr5:5q35.2-35.3	likely pathogenic
NM_005451.5(PDLIM7):c.74A>G (p.Asn25Ser)	single nucleotide variant	not specified [RCV004078811]	Chr5:177496439 [GRCh38] Chr5:176923440 [GRCh37] Chr5:5q35.3	uncertain significance
NM_005451.5(PDLIM7):c.752C>T (p.Thr251Met)	single nucleotide variant	not specified [RCV004222784]	Chr5:177489510 [GRCh38] Chr5:176916511 [GRCh37] Chr5:5q35.3	uncertain significance
NM_005451.5(PDLIM7):c.473G>A (p.Arg158Gln)	single nucleotide variant	not specified [RCV004142883]	Chr5:177491072 [GRCh38] Chr5:176918073 [GRCh37] Chr5:5q35.3	uncertain significance
NM_005451.5(PDLIM7):c.542A>G (p.Asp181Gly)	single nucleotide variant	not specified [RCV004205310]	Chr5:177490900 [GRCh38] Chr5:176917901 [GRCh37] Chr5:5q35.3	uncertain significance
NM_005451.5(PDLIM7):c.1115C>T (p.Thr372Met)	single nucleotide variant	not specified [RCV004145617]	Chr5:177484126 [GRCh38] Chr5:176911127 [GRCh37] Chr5:5q35.3	uncertain significance
NM_005451.5(PDLIM7):c.418G>A (p.Val140Ile)	single nucleotide variant	not specified [RCV004150477]	Chr5:177491127 [GRCh38] Chr5:176918128 [GRCh37] Chr5:5q35.3	uncertain significance
NM_005451.5(PDLIM7):c.226C>A (p.Arg76Ser)	single nucleotide variant	not specified [RCV004206434]	Chr5:177492548 [GRCh38] Chr5:176919549 [GRCh37] Chr5:5q35.3	uncertain significance
NM_005451.5(PDLIM7):c.1003G>A (p.Val335Met)	single nucleotide variant	not specified [RCV004206905]	Chr5:177488115 [GRCh38] Chr5:176915116 [GRCh37] Chr5:5q35.3	uncertain significance
NM_005451.5(PDLIM7):c.211C>T (p.Arg71Trp)	single nucleotide variant	not specified [RCV004165390]	Chr5:177492563 [GRCh38] Chr5:176919564 [GRCh37] Chr5:5q35.3	uncertain significance
NM_005451.5(PDLIM7):c.44G>A (p.Gly15Asp)	single nucleotide variant	not specified [RCV004148257]	Chr5:177496469 [GRCh38] Chr5:176923470 [GRCh37] Chr5:5q35.3	uncertain significance
NM_005451.5(PDLIM7):c.67G>T (p.Asp23Tyr)	single nucleotide variant	not specified [RCV004071337]	Chr5:177496446 [GRCh38] Chr5:176923447 [GRCh37] Chr5:5q35.3	uncertain significance
NM_005451.5(PDLIM7):c.470C>T (p.Pro157Leu)	single nucleotide variant	not specified [RCV004153383]	Chr5:177491075 [GRCh38] Chr5:176918076 [GRCh37] Chr5:5q35.3	uncertain significance
NM_005451.5(PDLIM7):c.1141A>G (p.Met381Val)	single nucleotide variant	not specified [RCV004110679]	Chr5:177484100 [GRCh38] Chr5:176911101 [GRCh37] Chr5:5q35.3	uncertain significance
NM_005451.5(PDLIM7):c.256C>G (p.Pro86Ala)	single nucleotide variant	not specified [RCV004130239]	Chr5:177492428 [GRCh38] Chr5:176919429 [GRCh37] Chr5:5q35.3	uncertain significance
NM_005451.5(PDLIM7):c.1186T>A (p.Phe396Ile)	single nucleotide variant	not specified [RCV004165463]	Chr5:177483968 [GRCh38] Chr5:176910969 [GRCh37] Chr5:5q35.3	uncertain significance
NM_005451.5(PDLIM7):c.166G>A (p.Glu56Lys)	single nucleotide variant	not specified [RCV004263133]	Chr5:177492608 [GRCh38] Chr5:176919609 [GRCh37] Chr5:5q35.3	uncertain significance
NM_005451.5(PDLIM7):c.661C>T (p.Arg221Cys)	single nucleotide variant	not specified [RCV004339953]	Chr5:177489601 [GRCh38] Chr5:176916602 [GRCh37] Chr5:5q35.3	uncertain significance
NM_005451.5(PDLIM7):c.721A>G (p.Thr241Ala)	single nucleotide variant	not specified [RCV004346809]	Chr5:177489541 [GRCh38] Chr5:176916542 [GRCh37] Chr5:5q35.3	uncertain significance
NM_005451.5(PDLIM7):c.631C>T (p.Pro211Ser)	single nucleotide variant	not specified [RCV004362114]	Chr5:177489774 [GRCh38] Chr5:176916775 [GRCh37] Chr5:5q35.3	uncertain significance
NM_005451.5(PDLIM7):c.127G>A (p.Gly43Arg)	single nucleotide variant	not specified [RCV004345623]	Chr5:177492647 [GRCh38] Chr5:176919648 [GRCh37] Chr5:5q35.3	uncertain significance
NM_005451.5(PDLIM7):c.685G>A (p.Ala229Thr)	single nucleotide variant	not specified [RCV004350048]	Chr5:177489577 [GRCh38] Chr5:176916578 [GRCh37] Chr5:5q35.3	uncertain significance
GRCh37/hg19 5q35.2-35.3(chr5:175332333-177469711)x1	copy number loss	not provided [RCV003485494]	Chr5:175332333..177469711 [GRCh37] Chr5:5q35.2-35.3	pathogenic
Single allele	deletion	not provided [RCV003448669]	Chr5:175559209..177430432 [GRCh37] Chr5:5q35.2-35.3	pathogenic
GRCh37/hg19 5q35.3(chr5:176744569-177107777)x3	copy number gain	not specified [RCV003986576]	Chr5:176744569..177107777 [GRCh37] Chr5:5q35.3	uncertain significance
GRCh37/hg19 5q35.2-35.3(chr5:176385815-178410738)x1	copy number loss	not specified [RCV003986570]	Chr5:176385815..178410738 [GRCh37] Chr5:5q35.2-35.3	pathogenic
NM_005451.5(PDLIM7):c.841G>A (p.Val281Met)	single nucleotide variant	not specified [RCV004505413]	Chr5:177489421 [GRCh38] Chr5:176916422 [GRCh37] Chr5:5q35.3	uncertain significance
NM_005451.5(PDLIM7):c.712A>G (p.Lys238Glu)	single nucleotide variant	not specified [RCV004505412]	Chr5:177489550 [GRCh38] Chr5:176916551 [GRCh37] Chr5:5q35.3	uncertain significance
NM_005451.5(PDLIM7):c.418G>C (p.Val140Leu)	single nucleotide variant	not specified [RCV004505408]	Chr5:177491127 [GRCh38] Chr5:176918128 [GRCh37] Chr5:5q35.3	uncertain significance
NM_005451.5(PDLIM7):c.868C>T (p.Arg290Trp)	single nucleotide variant	not specified [RCV004505415]	Chr5:177489394 [GRCh38] Chr5:176916395 [GRCh37] Chr5:5q35.3	uncertain significance
NM_005451.5(PDLIM7):c.860A>G (p.Lys287Arg)	single nucleotide variant	not specified [RCV004505414]	Chr5:177489402 [GRCh38] Chr5:176916403 [GRCh37] Chr5:5q35.3	uncertain significance
NM_005451.5(PDLIM7):c.665C>T (p.Pro222Leu)	single nucleotide variant	not specified [RCV004505411]	Chr5:177489597 [GRCh38] Chr5:176916598 [GRCh37] Chr5:5q35.3	uncertain significance
GRCh37/hg19 5q35.2-35.3(chr5:175470000-177450000)x1	copy number loss	not provided [RCV004577486]	Chr5:175470000..177450000 [GRCh37] Chr5:5q35.2-35.3	pathogenic
NM_005451.5(PDLIM7):c.304C>T (p.Pro102Ser)	single nucleotide variant	not specified [RCV004505406]	Chr5:177491901 [GRCh38] Chr5:176918902 [GRCh37] Chr5:5q35.3	uncertain significance
NM_005451.5(PDLIM7):c.1330A>G (p.Lys444Glu)	single nucleotide variant	not specified [RCV004505404]	Chr5:177483688 [GRCh38] Chr5:176910689 [GRCh37] Chr5:5q35.3	uncertain significance
NM_005451.5(PDLIM7):c.614C>T (p.Thr205Ile)	single nucleotide variant	not specified [RCV004505409]	Chr5:177489791 [GRCh38] Chr5:176916792 [GRCh37] Chr5:5q35.3	uncertain significance
NM_005451.5(PDLIM7):c.349C>T (p.Arg117Trp)	single nucleotide variant	not specified [RCV004505407]	Chr5:177491856 [GRCh38] Chr5:176918857 [GRCh37] Chr5:5q35.3	uncertain significance
NM_005451.5(PDLIM7):c.1331A>G (p.Lys444Arg)	single nucleotide variant	not specified [RCV004505405]	Chr5:177483687 [GRCh38] Chr5:176910688 [GRCh37] Chr5:5q35.3	uncertain significance
NM_005451.5(PDLIM7):c.1153G>A (p.Val385Met)	single nucleotide variant	not specified [RCV004505403]	Chr5:177484088 [GRCh38] Chr5:176911089 [GRCh37] Chr5:5q35.3	uncertain significance
NM_005451.5(PDLIM7):c.643G>A (p.Ala215Thr)	single nucleotide variant	not specified [RCV004659745]	Chr5:177489619 [GRCh38] Chr5:176916620 [GRCh37] Chr5:5q35.3	likely benign
NM_005451.5(PDLIM7):c.829G>A (p.Gly277Ser)	single nucleotide variant	not specified [RCV004655592]	Chr5:177489433 [GRCh38] Chr5:176916434 [GRCh37] Chr5:5q35.3	uncertain significance
NM_005451.5(PDLIM7):c.746C>T (p.Pro249Leu)	single nucleotide variant	not specified [RCV004655593]	Chr5:177489516 [GRCh38] Chr5:176916517 [GRCh37] Chr5:5q35.3	uncertain significance
NM_005451.5(PDLIM7):c.704C>T (p.Ala235Val)	single nucleotide variant	not specified [RCV004655594]	Chr5:177489558 [GRCh38] Chr5:176916559 [GRCh37] Chr5:5q35.3	uncertain significance
NM_005451.5(PDLIM7):c.101C>T (p.Thr34Ile)	single nucleotide variant	not specified [RCV004655595]	Chr5:177492673 [GRCh38] Chr5:176919674 [GRCh37] Chr5:5q35.3	uncertain significance
NM_005451.5(PDLIM7):c.815G>A (p.Gly272Glu)	single nucleotide variant	not specified [RCV004841814]	Chr5:177489447 [GRCh38] Chr5:176916448 [GRCh37] Chr5:5q35.3	uncertain significance
NM_005451.5(PDLIM7):c.662G>A (p.Arg221His)	single nucleotide variant	not specified [RCV004841816]	Chr5:177489600 [GRCh38] Chr5:176916601 [GRCh37] Chr5:5q35.3	uncertain significance
NM_005451.5(PDLIM7):c.94C>T (p.Arg32Trp)	single nucleotide variant	not specified [RCV004841817]	Chr5:177496419 [GRCh38] Chr5:176923420 [GRCh37] Chr5:5q35.3	uncertain significance
NM_005451.5(PDLIM7):c.1083C>A (p.His361Gln)	single nucleotide variant	not specified [RCV004841815]	Chr5:177484158 [GRCh38] Chr5:176911159 [GRCh37] Chr5:5q35.3	uncertain significance
GRCh37/hg19 5q35.2-35.3(chr5:175570678-177414568)x3	copy number gain	not provided [RCV004819302]	Chr5:175570678..177414568 [GRCh37] Chr5:5q35.2-35.3	pathogenic

Predicted Target Of

	Summary Value
Count of predictions:	7654
Count of miRNA genes:	1073
Interacting mature miRNAs:	1365
Transcripts:	ENST00000355572, ENST00000355841, ENST00000356618, ENST00000359895, ENST00000393546, ENST00000393551, ENST00000463411, ENST00000486828, ENST00000493815, ENST00000503346, ENST00000503827, ENST00000504318, ENST00000504380, ENST00000505074, ENST00000505746, ENST00000506161, ENST00000506537
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2289409	BW320_H	Body weight QTL 320 (human)	3.5	0.0002	Body weight	lean mass	5	160925164	181538259	Human

RH80795

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	5	176,910,400 - 176,910,651	UniSTS	GRCh37
Build 36	5	176,843,006 - 176,843,257	RGD	NCBI36
Celera	5	171,591,055 - 171,591,306	RGD
Cytogenetic Map	5	q35.3	UniSTS
HuRef	5	171,830,721 - 171,830,972	UniSTS
GeneMap99-GB4 RH Map	5	656.99	UniSTS

AV007930

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	5	176,917,247 - 176,917,332	UniSTS	GRCh37
Build 36	5	176,849,853 - 176,849,938	RGD	NCBI36

SHGC-148959

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	5	176,917,207 - 176,917,336	UniSTS	GRCh37
Build 36	5	176,849,813 - 176,849,942	RGD	NCBI36
Celera	5	171,584,376 - 171,584,505	RGD
Cytogenetic Map	5	q35.3	UniSTS
HuRef	5	171,837,523 - 171,837,652	UniSTS
TNG Radiation Hybrid Map	5	82941.0	UniSTS

STS_03

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	5	176,917,568 - 176,917,814	UniSTS	GRCh37
Build 36	5	176,850,174 - 176,850,420	RGD	NCBI36
Celera	5	171,583,906 - 171,584,144	RGD
Cytogenetic Map	5	q35.3	UniSTS
HuRef	5	171,837,884 - 171,838,130	UniSTS

PDLIM7_8917

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	5	176,917,051 - 176,917,590	UniSTS	GRCh37
Build 36	5	176,849,657 - 176,850,196	RGD	NCBI36
Celera	5	171,584,122 - 171,584,661	RGD
HuRef	5	171,837,367 - 171,837,906	UniSTS

RH65364

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	5	176,917,247 - 176,917,419	UniSTS	GRCh37
Build 36	5	176,849,853 - 176,850,025	RGD	NCBI36
Celera	5	171,584,293 - 171,584,465	RGD
Cytogenetic Map	5	q35.3	UniSTS
HuRef	5	171,837,563 - 171,837,735	UniSTS
GeneMap99-GB4 RH Map	5	645.5	UniSTS
NCBI RH Map	5	973.0	UniSTS

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

adipose tissue	alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	entire extraembryonic component	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	pharyngeal arch	renal system	reproductive system	respiratory system	sensory system
1204	2439	2788	2250	4953	1724	2351	5	624	1950	465	2269	7301	6467	53	3716	1	852	1742	1617	173


RefSeq Transcripts	NM_005451	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_203352	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_213636	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_103804	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_011534698	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_011534699	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC145098	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF265209	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF345904	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF345905	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF345906	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK096826	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC001093	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC007648	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC014521	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC067806	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC084575	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BG714861	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BG772677	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BU956109	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CB993539	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH471195	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CP068273	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	HY026171	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	L35240	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENST00000355572 ⟹ ENSP00000347776

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	177,490,246 - 177,497,573 (-)	Ensembl

Ensembl Acc Id:

ENST00000355841 ⟹ ENSP00000348099

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	177,483,394 - 177,497,604 (-)	Ensembl

Ensembl Acc Id:

ENST00000359895 ⟹ ENSP00000352964

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	177,483,394 - 177,497,561 (-)	Ensembl

Ensembl Acc Id:

ENST00000393546 ⟹ ENSP00000377177

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	177,491,010 - 177,497,601 (-)	Ensembl

Ensembl Acc Id:

ENST00000393551 ⟹ ENSP00000377182

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	177,487,897 - 177,497,583 (-)	Ensembl

Ensembl Acc Id:

ENST00000463411

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	177,491,759 - 177,497,606 (-)	Ensembl

Ensembl Acc Id:

ENST00000486828 ⟹ ENSP00000439157

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	177,483,398 - 177,497,601 (-)	Ensembl

Ensembl Acc Id:

ENST00000493815 ⟹ ENSP00000431236

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	177,483,394 - 177,497,561 (-)	Ensembl

Ensembl Acc Id:

ENST00000503346

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	177,491,073 - 177,492,970 (-)	Ensembl

Ensembl Acc Id:

ENST00000503827 ⟹ ENSP00000422363

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	177,491,096 - 177,496,427 (-)	Ensembl

Ensembl Acc Id:

ENST00000504318

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	177,491,072 - 177,492,572 (-)	Ensembl

Ensembl Acc Id:

ENST00000504380

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	177,483,695 - 177,484,473 (-)	Ensembl

Ensembl Acc Id:

ENST00000505074 ⟹ ENSP00000426213

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	177,489,811 - 177,497,586 (-)	Ensembl

Ensembl Acc Id:

ENST00000505746

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	177,483,875 - 177,485,014 (-)	Ensembl

Ensembl Acc Id:

ENST00000506161 ⟹ ENSP00000424850

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	177,491,025 - 177,496,831 (-)	Ensembl

Ensembl Acc Id:

ENST00000506537 ⟹ ENSP00000421664

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	177,492,413 - 177,496,877 (-)	Ensembl

RefSeq Acc Id:

NM_005451 ⟹ NP_005442

RefSeq Status:

REVIEWED

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	5	177,483,394 - 177,497,604 (-)	NCBI
GRCh37	5	176,910,395 - 176,924,606 (-)	NCBI
Build 36	5	176,843,001 - 176,857,208 (-)	NCBI Archive
HuRef	5	171,830,716 - 171,845,067 (-)	NCBI
CHM1_1	5	176,343,378 - 176,357,560 (-)	NCBI
T2T-CHM13v2.0	5	178,026,382 - 178,040,598 (-)	NCBI

Sequence:

show sequence

GTCAGAACACTGGCGGCCGATCCCAACGAGGCTCCCTGGAGCCCGACGCAGAGCAGCGCCCTGGCCGGGCCAAGCAGGAGCCGGCATCATGGATTCCTTCAAAGTAGTGCTGGAGGGGCCAGCACCTT
GGGGCTTCCGGCTGCAAGGGGGCAAGGACTTCAATGTGCCCCTCTCCATTTCCCGGCTCACTCCTGGGGGCAAAGCGGCGCAGGCCGGAGTGGCCGTGGGTGACTGGGTGCTGAGCATCGATGGCGAG
AATGCGGGTAGCCTCACACACATCGAAGCTCAGAACAAGATCCGGGCCTGCGGGGAGCGCCTCAGCCTGGGCCTCAGCAGGGCCCAGCCGGTTCAGAGCAAACCGCAGAAGGCCTCCGCCCCCGCCGC
GGACCCTCCGCGGTACACCTTTGCACCCAGCGTCTCCCTCAACAAGACGGCCCGGCCCTTTGGGGCGCCCCCGCCCGCTGACAGCGCCCCGCAGCAGAATGGACAGCCGCTCCGACCGCTGGTCCCAG
ATGCCAGCAAGCAGCGGCTGATGGAGAACACAGAGGACTGGCGGCCGCGGCCGGGGACAGGCCAGTCGCGTTCCTTCCGCATCCTTGCCCACCTCACAGGCACCGAGTTCATGCAAGACCCGGATGAG
GAGCACCTGAAGAAATCAAGCCAGGTGCCCAGGACAGAAGCCCCAGCCCCAGCCTCATCTACACCCCAGGAGCCCTGGCCTGGCCCTACCGCCCCCAGCCCTACCAGCCGCCCGCCCTGGGCTGTGGA
CCCTGCGTTTGCCGAGCGCTATGCCCCGGACAAAACGAGCACAGTGCTGACCCGGCACAGCCAGCCGGCCACGCCCACGCCGCTGCAGAGCCGCACCTCCATTGTGCAGGCAGCTGCCGGAGGGGTGC
CAGGAGGGGGCAGCAACAACGGCAAGACTCCCGTGTGTCACCAGTGCCACAAGGTCATCCGGGGCCGCTACCTGGTGGCGCTGGGCCACGCGTACCACCCGGAGGAGTTTGTGTGTAGCCAGTGTGGG
AAGGTCCTGGAAGAGGGTGGCTTCTTTGAGGAGAAGGGCGCCATCTTCTGCCCACCATGCTATGACGTGCGCTATGCACCCAGCTGTGCCAAGTGCAAGAAGAAGATTACAGGCGAGATCATGCACGC
CCTGAAGATGACCTGGCACGTGCACTGCTTTACCTGTGCTGCCTGCAAGACGCCCATCCGGAACAGGGCCTTCTACATGGAGGAGGGCGTGCCCTATTGCGAGCGAGACTATGAGAAGATGTTTGGCA
CGAAATGCCATGGCTGTGACTTCAAGATCGACGCTGGGGACCGCTTCCTGGAGGCCCTGGGCTTCAGCTGGCATGACACCTGCTTCGTCTGTGCGATATGTCAGATCAACCTGGAAGGAAAGACCTTC
TACTCCAAGAAGGACAGGCCTCTCTGCAAGAGCCATGCCTTCTCTCATGTGTGAGCCCCTTCTGCCCACAGCTGCCGCGGTGGCCCCTAGCCTGAGGGGCCTGGAGTCGTGGCCCTGCATTTCTGGGT
AGGGCTGGCAATGGTTGCCTTAACCCTGGCTCCTGGCCCGAGCCTGGGGCTCCCTGGGCCCTGCCCCACCCACCTTATCCTCCCACCCCACTCCCTCCACCACCACAGCACACCGGTGCTGGCCACAC
CAGCCCCCTTTCACCTCCAGTGCCACAATAAACCTGTACCCAGCTGTG

hide sequence

RefSeq Acc Id:

NM_203352 ⟹ NP_976227

RefSeq Status:

REVIEWED

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	5	177,483,394 - 177,497,604 (-)	NCBI
Build 36	5	176,843,001 - 176,857,208 (-)	NCBI Archive
HuRef	5	171,830,716 - 171,845,067 (-)	NCBI
CHM1_1	5	176,343,378 - 176,357,560 (-)	NCBI
T2T-CHM13v2.0	5	178,026,382 - 178,040,598 (-)	NCBI

Sequence:

show sequence

GTCAGAACACTGGCGGCCGATCCCAACGAGGCTCCCTGGAGCCCGACGCAGAGCAGCGCCCTGG
CCGGGCCAAGCAGGAGCCGGCATCATGGATTCCTTCAAAGTAGTGCTGGAGGGGCCAGCACCTTGGGGCTTCCGGCTGCAAGGGGGCAAGGACTTCAATGTGCCCCTCTCCATTTCCCGGCTCACTCC
TGGGGGCAAAGCGGCGCAGGCCGGAGTGGCCGTGGGTGACTGGGTGCTGAGCATCGATGGCGAGAATGCGGGTAGCCTCACACACATCGAAGCTCAGAACAAGATCCGGGCCTGCGGGGAGCGCCTCA
GCCTGGGCCTCAGCAGGGCCCAGCCGGTTCAGAGCAAACCGCAGAAGGTGCAGACCCCTGACAAACAGCCGCTCCGACCGCTGGTCCCAGATGCCAGCAAGCAGCGGCTGATGGAGAACACAGAGGAC
TGGCGGCCGCGGCCGGGGACAGGCCAGTCGCGTTCCTTCCGCATCCTTGCCCACCTCACAGGCACCGAGTTCATGCAAGACCCGGATGAGGAGCACCTGAAGAAATCAAGCCAGGTGCCCAGGACAGA
AGCCCCAGCCCCAGCCTCATCTACACCCCAGGAGCCCTGGCCTGGCCCTACCGCCCCCAGCCCTACCAGCCGCCCGCCCTGGGCTGTGGACCCTGCGTTTGCCGAGCGCTATGCCCCGGACAAAACGA
GCACAGTGCTGACCCGGCACAGCCAGCCGGCCACGCCCACGCCGCTGCAGAGCCGCACCTCCATTGTGCAGGCAGCTGCCGGAGGGGTGCCAGGAGGGGGCAGCAACAACGGCAAGACTCCCGTGTGT
CACCAGTGCCACAAGGTCATCCGGGGCCGCTACCTGGTGGCGCTGGGCCACGCGTACCACCCGGAGGAGTTTGTGTGTAGCCAGTGTGGGAAGGTCCTGGAAGAGGGTGGCTTCTTTGAGGAGAAGGG
CGCCATCTTCTGCCCACCATGCTATGACGTGCGCTATGCACCCAGCTGTGCCAAGTGCAAGAAGAAGATTACAGGCGAGATCATGCACGCCCTGAAGATGACCTGGCACGTGCACTGCTTTACCTGTG
CTGCCTGCAAGACGCCCATCCGGAACAGGGCCTTCTACATGGAGGAGGGCGTGCCCTATTGCGAGCGAGACTATGAGAAGATGTTTGGCACGAAATGCCATGGCTGTGACTTCAAGATCGACGCTGGG
GACCGCTTCCTGGAGGCCCTGGGCTTCAGCTGGCATGACACCTGCTTCGTCTGTGCGATATGTCAGATCAACCTGGAAGGAAAGACCTTCTACTCCAAGAAGGACAGGCCTCTCTGCAAGAGCCATGC
CTTCTCTCATGTGTGAGCCCCTTCTGCCCACAGCTGCCGCGGTGGCCCCTAGCCTGAGGGGCCTGGAGTCGTGGCCCTGCATTTCTGGGTAGGGCTGGCAATGGTTGCCTTAACCCTGGCTCCTGGCC
CGAGCCTGGGGCTCCCTGGGCCCTGCCCCACCCACCTTATCCTCCCACCCCACTCCCTCCACCACCACAGCACACCGGTGCTGGCCACACCAGCCCCCTTTCACCTCCAGTGCCACAATAAACCTGTA
CCCAGCTGTG

hide sequence

RefSeq Acc Id:

NM_213636 ⟹ NP_998801

RefSeq Status:

REVIEWED

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	5	177,490,246 - 177,497,604 (-)	NCBI
GRCh37	5	176,910,395 - 176,924,606 (-)	NCBI
Build 36	5	176,849,853 - 176,857,208 (-)	NCBI Archive
HuRef	5	171,830,716 - 171,845,067 (-)	NCBI
CHM1_1	5	176,350,201 - 176,357,560 (-)	NCBI
T2T-CHM13v2.0	5	178,033,228 - 178,040,598 (-)	NCBI

Sequence:

show sequence

GTCAGAACACTGGCGGCCGATCCCAACGAGGCTCCCTGGAGCCCGACGCAGAGCAGCGCCCTGG
CCGGGCCAAGCAGGAGCCGGCATCATGGATTCCTTCAAAGTAGTGCTGGAGGGGCCAGCACCTTGGGGCTTCCGGCTGCAAGGGGGCAAGGACTTCAATGTGCCCCTCTCCATTTCCCGGCTCACTCC
TGGGGGCAAAGCGGCGCAGGCCGGAGTGGCCGTGGGTGACTGGGTGCTGAGCATCGATGGCGAGAATGCGGGTAGCCTCACACACATCGAAGCTCAGAACAAGATCCGGGCCTGCGGGGAGCGCCTCA
GCCTGGGCCTCAGCAGGGCCCAGCCGGTTCAGAGCAAACCGCAGAAGGCCTCCGCCCCCGCCGCGGACCCTCCGCGGTACACCTTTGCACCCAGCGTCTCCCTCAACAAGACGGCCCGGCCCTTTGGG
GCGCCCCCGCCCGCTGACAGCGCCCCGCAGCAGAATGGACAGCCGCTCCGACCGCTGGTCCCAGATGCCAGCAAGCAGCGGCTGATGGAGAACACAGAGGACTGGCGGCCGCGGCCGGGGACAGGCCA
GTCGCGTTCCTTCCGCATCCTTGCCCACCTCACAGGCACCGAGTTCATGCAAGACCCGGATGAGGAGCACCTGAAGAAATCAAGGGAAAAGTATGTCCTGGAGCTGCAGAGCCCACGCTACACCCGCC
TCCGGGACTGGCACCACCAGCGCTCTGCCCACGTGCTCAACGTGCAGTCGTAGCCCGGCCCTCTCCAGCCGGCTGCCCTCTCTGCCTCCCTCTTTCTGTTCCTCCTGCCCAGGGCACCCCCTTAGTGC
CTCCAGCTTCTGCCTACCTCACCCCCCCTTTCGTGCCCCTGGCCTGAGCCTCCTGCTGGCCTGGCCCTGGCCGCCCACCTGGGTTCATCTGACACTGCCTTCCCTCTTTGCCCTGTGGTACTGCTGTC
TGCCAGGTCTGTGCTGCCTTGGGCATGGAATAAACATTCTCAGCCCTG

hide sequence

RefSeq Acc Id:

NR_103804

RefSeq Status:

REVIEWED

Type:

NON-CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	5	177,483,394 - 177,497,604 (-)	NCBI
HuRef	5	171,830,716 - 171,845,067 (-)	NCBI
CHM1_1	5	176,343,378 - 176,357,560 (-)	NCBI
T2T-CHM13v2.0	5	178,026,382 - 178,040,598 (-)	NCBI

Sequence:

show sequence

GTCAGAACACTGGCGGCCGATCCCAACGAGGCTCCCTGGAGCCCGACGCAGAGCAGCGCCCTGG
CCGGGCCAAGCAGGAGCCGGCATCATGGATTCCTTCAAAGTAGTGCTGGAGGGGCCAGCACCTTGGGGCTTCCGGCTGCAAGGGGGCAAGGACTTCAATGTGCCCCTCTCCATTTCCCGGCTCACTCC
TGGGGGCAAAGCGGCGCAGGCCGGAGTGGCCGTGGGTGACTGGGTGCTGAGCATCGATGGCGAGAATGCGGGTAGCCTCACACACATCGAAGCTCAGAACAAGATCCGGGCCTGCGGGGAGCGCCTCA
GCCTGGGCCTCAGCAGGGCCCAGCCGGTTCAGAGCAAACCGCAGAAGGCCTCCGCCCCCGCCGCGGACCCTCCGCGGTACACCTTTGCACCCAGCGTCTCCCTCAACAAGACGGCCCGGCCCTTTGGG
GCGCCCCCGCCCGCTGACAGCGCCCCGCAGCAGAATGGACAGCCGCTCCGACCGCTGGTCCCAGATGCCAGCAAGCAGCGGCTGATGGAGAACACAGAGGACTGGCGGCCGCGGCCGGGGACAGGCCA
GTCGCGTTCCTTCCGCATCCTTGCCCACCTCACAGGCACCGAGTTCATGCAAGACCCGGATGAGGAGCACCTGAAGAAATCAAGCTAGAGACCGCACACCAGCTAACTGGACATTGCTAGGAGAAGCT
GCCCTTCCCATCCCTACCCCAGTGGGACCTGGAATCCAACTCGGCAGTTTCCACGCCCCCAGTCATCTCCCGTGGGGCCAGCAGGACCCAGGTTGGGGGGTGGGGCCATGTCAGGAAGCTCAGCCATG
CAGGGCCTTGAATGGCAGATCTTGCAGCCAGGTGCCCAGGACAGAAGCCCCAGCCCCAGCCTCATCTACACCCCAGGAGCCCTGGCCTGGCCCTACCGCCCCCAGCCCTACCAGCCGCCCGCCCTGGG
CTGTGGACCCTGCGTTTGCCGAGCGCTATGCCCCGGACAAAACGAGCACAGTGCTGACCCGGCACAGCCAGCCGGCCACGCCCACGCCGCTGCAGAGCCGCACCTCCATTGTGCAGGCAGCTGCCGGA
GGGGTGCCAGGAGGGGGCAGCAACAACGGCAAGACTCCCGTGTGTCACCAGTGCCACAAGGTCATCCGGGGCCGCTACCTGGTGGCGCTGGGCCACGCGTACCACCCGGAGGAGTTTGTGTGTAGCCA
GTGTGGGAAGGTCCTGGAAGAGGGTGGCTTCTTTGAGGAGAAGGGCGCCATCTTCTGCCCACCATGCTATGACGTGCGCTATGCACCCAGCTGTGCCAAGTGCAAGAAGAAGATTACAGGCGAGATCA
TGCACGCCCTGAAGATGACCTGGCACGTGCACTGCTTTACCTGTGCTGCCTGCAAGACGCCCATCCGGAACAGGGCCTTCTACATGGAGGAGGGCGTGCCCTATTGCGAGCGAGACTATGAGAAGATG
TTTGGCACGAAATGCCATGGCTGTGACTTCAAGATCGACGCTGGGGACCGCTTCCTGGAGGCCCTGGGCTTCAGCTGGCATGACACCTGCTTCGTCTGTGCGATATGTCAGATCAACCTGGAAGGAAA
GACCTTCTACTCCAAGAAGGACAGGCCTCTCTGCAAGAGCCATGCCTTCTCTCATGTGTGAGCCCCTTCTGCCCACAGCTGCCGCGGTGGCCCCTAGCCTGAGGGGCCTGGAGTCGTGGCCCTGCATT
TCTGGGTAGGGCTGGCAATGGTTGCCTTAACCCTGGCTCCTGGCCCGAGCCTGGGGCTCCCTGGGCCCTGCCCCACCCACCTTATCCTCCCACCCCACTCCCTCCACCACCACAGCACACCGGTGCTG
GCCACACCAGCCCCCTTTCACCTCCAGTGCCACAATAAACCTGTACCCAGCTGTG

hide sequence


Protein RefSeqs	NP_005442	(Get FASTA)	NCBI Sequence Viewer
	NP_976227	(Get FASTA)	NCBI Sequence Viewer
	NP_998801	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAC37565	(Get FASTA)	NCBI Sequence Viewer
	AAF76152	(Get FASTA)	NCBI Sequence Viewer
	AAH01093	(Get FASTA)	NCBI Sequence Viewer
	AAH14521	(Get FASTA)	NCBI Sequence Viewer
	AAH84575	(Get FASTA)	NCBI Sequence Viewer
	AAK30567	(Get FASTA)	NCBI Sequence Viewer
	AAK30568	(Get FASTA)	NCBI Sequence Viewer
	AAK30569	(Get FASTA)	NCBI Sequence Viewer
	EAW84985	(Get FASTA)	NCBI Sequence Viewer
	EAW84986	(Get FASTA)	NCBI Sequence Viewer
	EAW84987	(Get FASTA)	NCBI Sequence Viewer
	EAW84988	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSP00000347776
	ENSP00000347776.2
	ENSP00000348099
	ENSP00000348099.2
	ENSP00000352964
	ENSP00000352964.2
	ENSP00000377182.1
	ENSP00000431236.1
	ENSP00000439157.1
GenBank Protein	Q9NR12	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_976227 ⟸ NM_203352
- Peptide Label:	isoform 2
- UniProtKB:	Q9NR12 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MDSFKVVLEGPAPWGFRLQGGKDFNVPLSISRLTPGGKAAQAGVAVGDWVLSIDGENAGSLTHIEAQNKIRACGERLSLGLSRAQPVQSKPQKVQTPDKQPLRPLVPDASKQRLMENTEDWRPRPGTG QSRSFRILAHLTGTEFMQDPDEEHLKKSSQVPRTEAPAPASSTPQEPWPGPTAPSPTSRPPWAVDPAFAERYAPDKTSTVLTRHSQPATPTPLQSRTSIVQAAAGGVPGGGSNNGKTPVCHQCHKVIR GRYLVALGHAYHPEEFVCSQCGKVLEEGGFFEEKGAIFCPPCYDVRYAPSCAKCKKKITGEIMHALKMTWHVHCFTCAACKTPIRNRAFYMEEGVPYCERDYEKMFGTKCHGCDFKIDAGDRFLEALG FSWHDTCFVCAICQINLEGKTFYSKKDRPLCKSHAFSHV hide sequence

RefSeq Acc Id:	NP_005442 ⟸ NM_005451
- Peptide Label:	isoform 1
- UniProtKB:	Q9BXB8 (UniProtKB/Swiss-Prot), Q96C91 (UniProtKB/Swiss-Prot), Q6NVZ5 (UniProtKB/Swiss-Prot), Q5XG82 (UniProtKB/Swiss-Prot), Q14250 (UniProtKB/Swiss-Prot), Q9BXB9 (UniProtKB/Swiss-Prot), Q9NR12 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MDSFKVVLEGPAPWGFRLQGGKDFNVPLSISRLTPGGKAAQAGVAVGDWVLSIDGENAGSLTHI EAQNKIRACGERLSLGLSRAQPVQSKPQKASAPAADPPRYTFAPSVSLNKTARPFGAPPPADSAPQQNGQPLRPLVPDASKQRLMENTEDWRPRPGTGQSRSFRILAHLTGTEFMQDPDEEHLKKSSQ VPRTEAPAPASSTPQEPWPGPTAPSPTSRPPWAVDPAFAERYAPDKTSTVLTRHSQPATPTPLQSRTSIVQAAAGGVPGGGSNNGKTPVCHQCHKVIRGRYLVALGHAYHPEEFVCSQCGKVLEEGGF FEEKGAIFCPPCYDVRYAPSCAKCKKKITGEIMHALKMTWHVHCFTCAACKTPIRNRAFYMEEGVPYCERDYEKMFGTKCHGCDFKIDAGDRFLEALGFSWHDTCFVCAICQINLEGKTFYSKKDRPL CKSHAFSHV hide sequence

RefSeq Acc Id:	NP_998801 ⟸ NM_213636
- Peptide Label:	isoform 4
- UniProtKB:	H7BYK4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDSFKVVLEGPAPWGFRLQGGKDFNVPLSISRLTPGGKAAQAGVAVGDWVLSIDGENAGSLTHI EAQNKIRACGERLSLGLSRAQPVQSKPQKASAPAADPPRYTFAPSVSLNKTARPFGAPPPADSAPQQNGQPLRPLVPDASKQRLMENTEDWRPRPGTGQSRSFRILAHLTGTEFMQDPDEEHLKKSRE KYVLELQSPRYTRLRDWHHQRSAHVLNVQS hide sequence

Ensembl Acc Id:

ENSP00000352964 ⟸ ENST00000359895

Ensembl Acc Id:

ENSP00000422363 ⟸ ENST00000503827

Protein Domains

LIM zinc-binding PDZ

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q9NR12-F1-model_v2	AlphaFold	Q9NR12	1-457	view protein structure

RGD ID:

6803453

Promoter ID:

HG_KWN:51918

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

HeLa_S3, K562, Lymphoblastoid

Transcripts:

UC003MHA.1

Position:

Human Assembly	Chr	Position (strand)	Source
Build 36	5	176,851,261 - 176,852,412 (-)	MPROMDB

RGD ID:

6812792

Promoter ID:

HG_ACW:66697

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

K562, Lymphoblastoid, NB4

Transcripts:

PDLIM7.CAPR07, PDLIM7.LAPR07, PDLIM7.VAAPR07

Position:

Human Assembly	Chr	Position (strand)	Source
Build 36	5	176,856,319 - 176,856,819 (-)	MPROMDB

RGD ID:

6803106

Promoter ID:

HG_KWN:51919

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

CD4+TCell, CD4+TCell_12Hour, HeLa_S3, K562, Lymphoblastoid, NB4

Transcripts:

ENST00000356618, ENST00000393546, NM_005451, NM_203352, OTTHUMT00000280608, OTTHUMT00000280609, OTTHUMT00000280611, UC003MHD.1, UC003MHE.1, UC003MHF.2, UC003MHG.1

Position:

Human Assembly	Chr	Position (strand)	Source
Build 36	5	176,856,944 - 176,857,444 (-)	MPROMDB

RGD ID:

6871716

Promoter ID:

EPDNEW_H9023

Type:

initiation region

Name:

PDLIM7_1

Description:

PDZ and LIM domain 7

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	5	177,497,601 - 177,497,661	EPDNEW

Database	Acc Id	Source(s)
COSMIC	PDLIM7	COSMIC
Ensembl Genes	ENSG00000196923	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENST00000355572	ENTREZGENE
	ENST00000355572.6	UniProtKB/Swiss-Prot
	ENST00000355841	ENTREZGENE
	ENST00000355841.7	UniProtKB/Swiss-Prot
	ENST00000359895	ENTREZGENE
	ENST00000359895.6	UniProtKB/Swiss-Prot
	ENST00000393551.5	UniProtKB/Swiss-Prot
	ENST00000486828	ENTREZGENE
	ENST00000486828.6	UniProtKB/Swiss-Prot
	ENST00000493815.5	UniProtKB/Swiss-Prot
Gene3D-CATH	2.30.42.10	UniProtKB/Swiss-Prot
	Cysteine Rich Protein	UniProtKB/Swiss-Prot
GTEx	ENSG00000196923	GTEx
HGNC ID	HGNC:22958	ENTREZGENE
Human Proteome Map	PDLIM7	Human Proteome Map
InterPro	PDZ	UniProtKB/Swiss-Prot
	PDZ-LIM_domain	UniProtKB/Swiss-Prot
	PDZ_sf	UniProtKB/Swiss-Prot
	Znf_LIM	UniProtKB/Swiss-Prot
KEGG Report	hsa:9260	UniProtKB/Swiss-Prot
NCBI Gene	9260	ENTREZGENE
OMIM	605903	OMIM
PANTHER	PDZ AND LIM DOMAIN PROTEIN 7	UniProtKB/Swiss-Prot
	PDZ AND LIM DOMAIN PROTEIN ZASP	UniProtKB/Swiss-Prot
Pfam	LIM	UniProtKB/Swiss-Prot
	PDZ	UniProtKB/Swiss-Prot
PharmGKB	PA128394546	PharmGKB
PROSITE	LIM_DOMAIN_1	UniProtKB/Swiss-Prot
	LIM_DOMAIN_2	UniProtKB/Swiss-Prot
	PDZ	UniProtKB/Swiss-Prot
SMART	LIM	UniProtKB/Swiss-Prot
	PDZ	UniProtKB/Swiss-Prot
Superfamily-SCOP	Glucocorticoid receptor-like (DNA-binding domain)	UniProtKB/Swiss-Prot
	SSF50156	UniProtKB/Swiss-Prot
UniProt	D6RAN1_HUMAN	UniProtKB/TrEMBL
	D6RF83_HUMAN	UniProtKB/TrEMBL
	D6RH06_HUMAN	UniProtKB/TrEMBL
	H7BYK4	ENTREZGENE, UniProtKB/TrEMBL
	PDLI7_HUMAN	UniProtKB/Swiss-Prot
	Q14250	ENTREZGENE
	Q5XG82	ENTREZGENE
	Q6NVZ5	ENTREZGENE
	Q96C91	ENTREZGENE
	Q9BXB8	ENTREZGENE
	Q9BXB9	ENTREZGENE
	Q9NR12	ENTREZGENE
UniProt Secondary	Q14250	UniProtKB/Swiss-Prot
	Q5XG82	UniProtKB/Swiss-Prot
	Q6NVZ5	UniProtKB/Swiss-Prot
	Q96C91	UniProtKB/Swiss-Prot
	Q9BXB8	UniProtKB/Swiss-Prot
	Q9BXB9	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2015-12-01	PDLIM7	PDZ and LIM domain 7	PDLIM7	PDZ and LIM domain 7 (enigma)	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
		Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

Send us a Message

Imported Disease Annotations - ClinVar