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ONTOLOGY REPORT - ANNOTATIONS

Term:snoRNA binding
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Accession:GO:0030515 term browser browse the term
Definition:Binding to a small nucleolar RNA.


show annotations for term's descendants           Sort by:
snoRNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bysl bystin-like enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 9:13,382,806...13,392,557
Ensembl chr 9:13,382,557...13,394,339 		JBrowse link
G Ddx21 DExD-box helicase 21 enables ISO
ISS		 (PMID:25470060)
GO_REF:0000024		 RGD
UniProt		 PMID:25470060 GO_REF:0000024 NCBI chr20:30,534,319...30,554,513
Ensembl chr20:30,534,319...30,554,543 		JBrowse link
G Heatr1 HEAT repeat containing 1 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr17:58,053,288...58,093,895
Ensembl chr17:58,051,700...58,093,948 		JBrowse link
G Imp4 IMP U3 small nucleolar ribonucleoprotein 4 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 9:36,654,127...36,659,265
Ensembl chr 9:36,654,401...36,660,075 		JBrowse link
G Nop10l1 NOP10 ribonucleoprotein like 1 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:68,656,172...68,656,369
Ensembl chr 3:68,656,172...68,656,363 		JBrowse link
G Nop56 NOP56 ribonucleoprotein enables ISO
IBA		 (PMID:17636026)
GO_REF:0000033		 RGD
GO_Central		 PMID:17636026 GO_REF:0000033 NCBI chr 3:117,476,963...117,481,847
Ensembl chr 3:117,477,053...117,481,841 		JBrowse link
G Nop58 NOP58 ribonucleoprotein enables ISO
IBA
IEA		 (PMID:17636026)
GO_REF:0000033
GO_REF:0000002		 RGD
GO_Central
InterPro		 PMID:17636026 GO_REF:0000002 GO_REF:0000033 NCBI chr 9:61,120,939...61,144,810
Ensembl chr 9:61,120,929...61,144,810 		JBrowse link
G Nudt1 nudix hydrolase 1 enables ISS
ISO		 GO_REF:0000024
(MGI:4849882|PMID:21070968)		 UniProt
RGD		 PMID:21070968 GO_REF:0000024 MGI:4849882 NCBI chr12:14,302,514...14,309,559
Ensembl chr12:14,302,694...14,305,826 		JBrowse link
G Nudt16 nudix hydrolase 16 enables ISO
IBA		 (PMID:18820299), (PMID:21337011)
GO_REF:0000033		 RGD
GO_Central		 PMID:18820299 PMID:21337011 GO_REF:0000033 NCBI chr 8:105,739,927...105,741,982
Ensembl chr 8:105,739,623...105,741,998 		JBrowse link
G Nudt16l1 nudix hydrolase 16 like 1 enables ISO
IBA		 (PMID:18820299), (PMID:21070968)
GO_REF:0000033		 RGD
GO_Central		 PMID:18820299 PMID:21070968 GO_REF:0000033 NCBI chr10:10,636,174...10,638,090
Ensembl chr10:10,636,174...10,688,370 		JBrowse link
G Nudt16l2 nudix hydrolase 16 like 2 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:105,754,821...105,756,548
Ensembl chr 8:105,754,844...105,756,518 		JBrowse link
G Nudt4 nudix hydrolase 4 enables ISS
ISO		 GO_REF:0000024
(MGI:4849882|PMID:21070968)		 UniProt
RGD		 PMID:21070968 GO_REF:0000024 MGI:4849882 NCBI chr 7:30,188,100...30,204,615
Ensembl chr 7:30,188,100...30,204,615 		JBrowse link
G Nudt5 nudix hydrolase 5 enables ISS
ISO		 GO_REF:0000024
(MGI:4849882|PMID:21070968)		 UniProt
RGD		 PMID:21070968 GO_REF:0000024 MGI:4849882 NCBI chr17:72,435,690...72,459,008
Ensembl chr17:72,435,697...72,459,001 		JBrowse link
G Nudt7 nudix hydrolase 7 enables ISO (MGI:4849882|PMID:21070968) RGD PMID:21070968 MGI:4849882 NCBI chr19:42,125,679...42,151,198
Ensembl chr19:42,125,711...42,151,081 		JBrowse link
G Nufip1 nuclear FMR1 interacting protein 1 contributes_to ISO (PMID:17636026) RGD PMID:17636026 NCBI chr15:51,429,518...51,460,308
Ensembl chr15:51,429,549...51,460,310 		JBrowse link
G Rrp9 ribosomal RNA processing 9, U3 small nucleolar RNA binding protein enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:107,116,411...107,126,123
Ensembl chr 8:107,117,471...107,126,123 		JBrowse link
G Sde2 SDE2 telomere maintenance homolog enables IEA
ISO
ISS		 GO_REF:0000107
(PMID:34365507)
GO_REF:0000024		 Ensembl
RGD
UniProt		 PMID:34365507 GO_REF:0000024 GO_REF:0000107 NCBI chr13:92,578,843...92,595,142
Ensembl chr13:92,578,874...92,595,140 		JBrowse link
G Snu13 small nuclear ribonucleoprotein 13 contributes_to ISO (PMID:17636026) RGD PMID:17636026 NCBI chr 7:113,565,293...113,570,887
Ensembl chr 7:113,565,295...113,570,872
Ensembl chr 1:113,565,295...113,570,872 		JBrowse link
G Utp6 UTP6 small subunit processome component enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:64,897,321...64,927,997
Ensembl chr10:64,897,328...64,927,997 		JBrowse link
G Wdr3 WD repeat domain 3 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:187,505,816...187,528,432
Ensembl chr 2:187,505,816...187,528,432 		JBrowse link
box C/D sno(s)RNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nolc1 nucleolar and coiled-body phosphoprotein 1 IDA RGD PMID:12446766 PMID:10679015 RGD:633420, RGD:633515 NCBI chr 1:244,921,275...244,932,089
Ensembl chr 1:244,921,377...244,932,088 		JBrowse link
G Snu13 small nuclear ribonucleoprotein 13 enables ISO (PMID:11081632)
(MGI:5882914|PMID:11842104)		 RGD PMID:11081632 PMID:11842104 MGI:5882914 NCBI chr 7:113,565,293...113,570,887
Ensembl chr 7:113,565,295...113,570,872
Ensembl chr 1:113,565,295...113,570,872 		JBrowse link
box H/ACA snoRNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dkc1 dyskerin pseudouridine synthase 1 enables ISO RNAcentral:URS0000210FD6_9606 (PMID:18082603) RGD PMID:18082603
G Gar1 GAR1 ribonucleoprotein enables ISO
IEA
IBA		 RNAcentral:URS00000DE3E2_9606|RNAcentral:URS0000148398_9606|RNAcentral:URS0000210FD6_9606 (PMID:10757788)
GO_REF:0000107
GO_REF:0000033		 RGD
Ensembl
GO_Central		 PMID:10757788 GO_REF:0000033 GO_REF:0000107 NCBI chr 2:218,375,231...218,382,509
Ensembl chr 2:218,375,353...218,382,524 		JBrowse link
G Nhp2 NHP2 ribonucleoprotein enables ISO
IBA		 RNAcentral:URS0000210FD6_9606 (PMID:18082603)
GO_REF:0000033		 RGD
GO_Central		 PMID:18082603 GO_REF:0000033 NCBI chr10:35,877,057...35,880,399
Ensembl chr10:35,877,054...35,882,545 		JBrowse link
G Nolc1 nucleolar and coiled-body phosphoprotein 1 IDA RGD PMID:12446766 PMID:10679015 RGD:633420, RGD:633515 NCBI chr 1:244,921,275...244,932,089
Ensembl chr 1:244,921,377...244,932,088 		JBrowse link
G Nop10 NOP10 ribonucleoprotein enables ISO RNAcentral:URS0000210FD6_9606 (PMID:18082603) RGD PMID:18082603 NCBI chr 3:99,066,857...99,067,942
Ensembl chr 3:99,066,857...99,067,942 		JBrowse link
U3 snoRNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bms1 BMS1 ribosome biogenesis factor enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:151,558,163...151,595,187
Ensembl chr 4:151,558,163...151,595,127 		JBrowse link
G Dhx37 DEAH-box helicase 37 enables ISO (PMID:30582406) RGD PMID:30582406 NCBI chr12:31,194,782...31,214,890
Ensembl chr12:31,194,859...31,216,802 		JBrowse link
G Isg20 interferon stimulated exonuclease gene 20 enables ISO (PMID:16514659) RGD PMID:16514659 NCBI chr 1:132,829,303...132,837,027
Ensembl chr 1:132,815,123...132,837,027 		JBrowse link
G Nhp2 NHP2 ribonucleoprotein IDA RGD PMID:15044956 RGD:10766448 NCBI chr10:35,877,057...35,880,399
Ensembl chr10:35,877,054...35,882,545 		JBrowse link
G Prkdc protein kinase, DNA-activated, catalytic subunit enables ISO (PMID:32103174) RGD PMID:32103174 NCBI chr11:85,040,790...85,258,357
Ensembl chr11:85,040,792...85,257,952 		JBrowse link
G Rrp9 ribosomal RNA processing 9, U3 small nucleolar RNA binding protein contributes_to
enables		 ISO (PMID:9418896)
(PMID:26867678)		 RGD PMID:9418896 PMID:26867678 NCBI chr 8:107,116,411...107,126,123
Ensembl chr 8:107,117,471...107,126,123 		JBrowse link
G Snu13 small nuclear ribonucleoprotein 13 enables ISO (PMID:11081632) RGD PMID:11081632 NCBI chr 7:113,565,293...113,570,887
Ensembl chr 7:113,565,295...113,570,872
Ensembl chr 1:113,565,295...113,570,872 		JBrowse link
G Tbl3 transducin (beta)-like 3 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:13,726,127...13,731,340
Ensembl chr10:13,726,129...13,731,372 		JBrowse link
G Tsr1 TSR1, ribosome maturation factor enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:59,760,420...59,771,868
Ensembl chr10:59,760,409...59,771,864 		JBrowse link
G Utp25 UTP25 small subunit processome component enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr13:104,630,390...104,651,681
Ensembl chr13:104,630,391...104,651,662 		JBrowse link
G Xrcc5 X-ray repair cross complementing 5 enables ISO (PMID:32103174) RGD PMID:32103174 NCBI chr 9:73,955,216...74,044,020
Ensembl chr 9:73,955,216...74,044,018 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  molecular_function 20483
    binding 17534
      organic cyclic compound binding 6113
        nucleic acid binding 3845
          RNA binding 1555
            snoRNA binding 33
              U3 snoRNA binding 11
              box C/D sno(s)RNA binding 2
              box H/ACA snoRNA binding 5
paths to the root