Nudt16l2 (nudix hydrolase 16 like 2) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Nudt16l2 (nudix hydrolase 16 like 2) Rattus norvegicus
Analyze
Symbol: Nudt16l2
Name: nudix hydrolase 16 like 2
RGD ID: 1584138
Description: Predicted to enable phosphodiesterase decapping endonuclease activity and snoRNA binding activity. Predicted to be involved in mRNA catabolic process and sno(s)RNA catabolic process. Predicted to be active in nucleus; INTERACTS WITH aflatoxin B1 (ortholog); antirheumatic drug (ortholog); benzo[a]pyrene (ortholog).
Type: protein-coding
RefSeq Status: PREDICTED
Previously known as: hypothetical protein LOC688828; LOC688828; similar to Nucleoside diphosphate-linked moiety X motif 16 (Nudix motif 16); uncharacterized protein LOC688828
RGD Orthologs
Human
Mouse
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88114,633,615 - 114,635,346 (-)NCBIGRCr8
mRatBN7.28105,754,821 - 105,756,548 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8105,754,844 - 105,756,518 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8111,406,352 - 111,408,025 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08109,605,606 - 109,607,279 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08107,448,286 - 107,449,959 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08113,687,983 - 113,689,657 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8113,687,975 - 113,689,681 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08113,074,156 - 113,075,830 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48110,214,707 - 110,216,381 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera8105,111,211 - 105,112,885 (-)NCBICelera
Cytogenetic Map8q32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IBA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Nudt16l2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88114,633,615 - 114,635,346 (-)NCBIGRCr8
mRatBN7.28105,754,821 - 105,756,548 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8105,754,844 - 105,756,518 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8111,406,352 - 111,408,025 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08109,605,606 - 109,607,279 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08107,448,286 - 107,449,959 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08113,687,983 - 113,689,657 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8113,687,975 - 113,689,681 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08113,074,156 - 113,075,830 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48110,214,707 - 110,216,381 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera8105,111,211 - 105,112,885 (-)NCBICelera
Cytogenetic Map8q32NCBI
NUDT16L2P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383131,361,845 - 131,365,122 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3131,361,930 - 131,363,564 (+)EnsemblGRCh38hg38GRCh38
GRCh38.p14 Ensembl3131,361,687 - 131,365,133 (+)EnsemblGRCh38hg38GRCh38
GRCh373131,080,689 - 131,083,966 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363132,563,428 - 132,566,656 (+)NCBINCBI36Build 36hg18NCBI36
Celera3129,506,361 - 129,509,638 (+)NCBICelera
Cytogenetic Map3q22.1NCBI
HuRef3128,465,504 - 128,468,781 (+)NCBIHuRef
CHM1_13131,044,278 - 131,047,555 (+)NCBICHM1_1
T2T-CHM13v2.03134,105,634 - 134,108,911 (+)NCBIT2T-CHM13v2.0
Nudt16l2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399105,020,543 - 105,022,281 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9105,020,541 - 105,022,291 (-)EnsemblGRCm39 Ensembl
GRCm389105,143,344 - 105,145,082 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9105,143,342 - 105,145,092 (-)EnsemblGRCm38mm10GRCm38
MGSCv379105,045,674 - 105,047,412 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv369105,001,444 - 105,003,182 (-)NCBIMGSCv36mm8
Celera9104,729,244 - 104,730,978 (-)NCBICelera
Cytogenetic Map9F1NCBI
cM Map956.61NCBI

Variants

.
Variants in Nudt16l2
4 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:40
Count of miRNA genes:40
Interacting mature miRNAs:40
Transcripts:ENSRNOT00000056435
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1549909Stresp11Stress response QTL 116.830.0019stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)873473045118473045Rat
1554321Bmd3Bone mineral density QTL 37.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)840952565123900184Rat
9590292Uminl3Urine mineral level QTL 33.620.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)871888757116888757Rat
738011Anxrr9Anxiety related response QTL 96.1exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)893535351123900184Rat
8693654Alc32Alcohol consumption QTL 3220.755drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)888612425107550209Rat
1358912Bw51Body weight QTL 512.95body mass (VT:0001259)body weight (CMO:0000012)851351728107062046Rat
738014Anxrr15Anxiety related response QTL 153.60.005locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)895718998123900184Rat
1300171Bp184Blood pressure QTL 1843.66arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)870513503118219066Rat
2313400Anxrr25Anxiety related response QTL 25aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)889265192114019816Rat
2303171Bp331Blood pressure QTL 3315.570.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)861290298119084929Rat
631210Bw3Body weight QTL35.9mesenteric fat pad mass (VT:0010427)mesenteric fat pad weight to body weight ratio (CMO:0000654)869349194112783834Rat
1358903Bp252Blood pressure QTL 25270.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)893965141123900184Rat
8694446Bw170Body weight QTL 17012.070.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)871888757116888757Rat
631650Stl6Serum triglyceride level QTL 640.0019blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)810378157112202585Rat
631653Bp125Blood pressure QTL 1253.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)866142385111142385Rat
1581557Eae16Experimental allergic encephalomyelitis QTL 163.8nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)88462195110921472Rat
724539Cm19Cardiac mass QTL 192.6heart mass (VT:0007028)calculated heart weight (CMO:0000073)8100149864120994388Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)846531639119088626Rat
2300182Bmd56Bone mineral density QTL 565.4femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)895718998123900184Rat
2300181Bmd55Bone mineral density QTL 555.70.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)876468691121468691Rat
631217Activ1Activity QTL 115.9voluntary movement trait (VT:0003491)number of photobeam interruptions in an experimental apparatus (CMO:0001517)8102370617108923645Rat
1358893Bp263Blood pressure QTL 2635.01arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)893965141123900184Rat
8694200Abfw4Abdominal fat weight QTL 49.070.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)871888757116888757Rat
8694392Bw161Body weight QTL 1618.060.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)871888757116888757Rat
61437Cia6Collagen induced arthritis QTL 6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)882460758122812818Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
2 3 11 5 6 3 1 3 9 1 11 29 3

Sequence


Ensembl Acc Id: ENSRNOT00000056435   ⟹   ENSRNOP00000053274
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl8105,754,844 - 105,756,518 (-)Ensembl
Rnor_6.0 Ensembl8113,687,975 - 113,689,681 (-)Ensembl
RefSeq Acc Id: NM_001109516   ⟹   NP_001102986
RefSeq Status: PREDICTED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88114,633,622 - 114,635,296 (-)NCBI
mRatBN7.28105,754,844 - 105,756,518 (-)NCBI
Rnor_6.08113,687,983 - 113,689,657 (-)NCBI
Rnor_5.08113,074,156 - 113,075,830 (-)NCBI
RGSC_v3.48110,214,707 - 110,216,381 (-)RGD
Celera8105,111,211 - 105,112,885 (-)RGD
Sequence:
RefSeq Acc Id: XM_039082162   ⟹   XP_038938090
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88114,633,615 - 114,635,346 (-)NCBI
mRatBN7.28105,754,821 - 105,756,548 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001102986 (Get FASTA)   NCBI Sequence Viewer  
  XP_038938090 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL77349 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000053274.2
RefSeq Acc Id: NP_001102986   ⟸   NM_001109516
- UniProtKB: D3ZKZ6 (UniProtKB/TrEMBL),   A6I2M8 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000053274   ⟸   ENSRNOT00000056435
RefSeq Acc Id: XP_038938090   ⟸   XM_039082162
- Peptide Label: isoform X1

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZKZ6-F1-model_v2 AlphaFold D3ZKZ6 1-211 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1584138 AgrOrtholog
BioCyc Gene G2FUF-29278 BioCyc
Ensembl Genes ENSRNOG00000037305 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000056435.4 UniProtKB/TrEMBL
Gene3D-CATH Nucleoside Triphosphate Pyrophosphohydrolase UniProtKB/TrEMBL
InterPro NUDIX_hydrolase_dom-like UniProtKB/TrEMBL
  NudT16 UniProtKB/TrEMBL
KEGG Report rno:688828 UniProtKB/TrEMBL
NCBI Gene 688828 ENTREZGENE
PANTHER NUDIX (NUCLEOSIDE DIPHOSPHATE-LINKED MOIETY X)-TYPE MOTIF 16-LIKE 2 UniProtKB/TrEMBL
  NUDIX T16 FAMILY MEMBER UniProtKB/TrEMBL
Pfam Nudt16-like UniProtKB/TrEMBL
PhenoGen Nudt16l2 PhenoGen
RatGTEx ENSRNOG00000037305 RatGTEx
Superfamily-SCOP NUDIX_hydrolase UniProtKB/TrEMBL
UniProt A6I2M8 ENTREZGENE, UniProtKB/TrEMBL
  D3ZKZ6 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-10-07 Nudt16l2  nudix hydrolase 16 like 2  LOC688828  similar to Nucleoside diphosphate-linked moiety X motif 16 (Nudix motif 16)  Name and Symbol changed 629549 APPROVED
2008-01-09 LOC688828  similar to Nucleoside diphosphate-linked moiety X motif 16 (Nudix motif 16)  LOC686210  similar to Nucleoside diphosphate-linked moiety X motif 16 (Nudix motif 16)  Data merged from RGD:1584353 1643240 APPROVED
2006-11-19 LOC688828  similar to Nucleoside diphosphate-linked moiety X motif 16 (Nudix motif 16)      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC686210  similar to Nucleoside diphosphate-linked moiety X motif 16 (Nudix motif 16)      Symbol and Name status set to provisional 70820 PROVISIONAL