Nudt7 (nudix hydrolase 7) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Nudt7 (nudix hydrolase 7) Rattus norvegicus
Analyze
Symbol: Nudt7
Name: nudix hydrolase 7
RGD ID: 1306719
Description: Predicted to have CoA pyrophosphatase activity; acetyl-CoA hydrolase activity; and snoRNA binding activity. Predicted to be involved in brown fat cell differentiation and purine nucleoside bisphosphate catabolic process. Predicted to localize to peroxisome. Orthologous to human NUDT7 (nudix hydrolase 7); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 3,3',5-triiodo-L-thyronine.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: LOC102555567; LOC361413; nudix (nucleoside diphosphate linked moiety X)-type motif 7; nudix motif 7; peroxisomal coenzyme A diphosphatase NUDT7; peroxisomal coenzyme A diphosphatase NUDT7-like
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21942,125,679 - 42,151,198 (+)NCBI
Rnor_6.0 Ensembl1946,455,761 - 46,482,050 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01946,455,745 - 46,470,070 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01957,278,677 - 57,293,046 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41944,181,782 - 44,196,976 (+)NCBIRGSC3.4rn4RGSC3.4
Celera1941,436,677 - 41,450,937 (+)NCBICelera
Cytogenetic Map19q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (EXP)
2-acetamidofluorene  (ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3,3',5-triiodo-L-thyronine  (EXP)
4,4'-diaminodiphenylmethane  (EXP)
4-\{[(5,5,8,8-tetramethyl-5,6,7,8-tetrahydronaphthalen-2-yl)carbonyl]amino\}benzoic acid  (ISO)
4-amino-2,6-dinitrotoluene  (EXP)
5-aza-2'-deoxycytidine  (ISO)
acrylamide  (ISO)
aflatoxin B1  (EXP,ISO)
aldrin  (ISO)
all-trans-retinoic acid  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene  (ISO)
bisphenol A  (EXP)
cadmium dichloride  (EXP)
calcitriol  (ISO)
carbon nanotube  (ISO)
choline  (ISO)
ciguatoxin CTX1B  (ISO)
cisplatin  (ISO)
clofibric acid  (EXP)
copper(II) sulfate  (ISO)
cyclosporin A  (ISO)
diarsenic trioxide  (ISO)
dibutyl phthalate  (EXP)
dicrotophos  (ISO)
dioxygen  (ISO)
dorsomorphin  (ISO)
ethanol  (ISO)
finasteride  (EXP)
fipronil  (EXP)
flutamide  (EXP)
folic acid  (ISO)
genistein  (EXP)
hydralazine  (ISO)
L-methionine  (ISO)
leflunomide  (EXP)
methylmercury chloride  (ISO)
monosodium L-glutamate  (ISO)
N-nitrosodiethylamine  (EXP,ISO)
nefazodone  (EXP)
nickel atom  (ISO)
nickel sulfate  (ISO)
nimesulide  (EXP)
paracetamol  (ISO)
perfluorooctanoic acid  (EXP)
phenobarbital  (ISO)
pirinixic acid  (EXP,ISO)
pregnenolone 16alpha-carbonitrile  (ISO)
propiconazole  (ISO)
resveratrol  (ISO)
rotenone  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenate  (ISO)
streptozocin  (ISO)
sulforaphane  (ISO)
tetrachloromethane  (ISO)
titanium dioxide  (ISO)
trichostatin A  (ISO)
triptonide  (ISO)
trovafloxacin  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vincristine  (ISO)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
peroxisome  (ISO)

Molecular Function

References

Additional References at PubMed
PMID:11415433   PMID:12790796   PMID:18492766   PMID:20178365   PMID:21070968  


Genomics

Comparative Map Data
Nudt7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21942,125,679 - 42,151,198 (+)NCBI
Rnor_6.0 Ensembl1946,455,761 - 46,482,050 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01946,455,745 - 46,470,070 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01957,278,677 - 57,293,046 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41944,181,782 - 44,196,976 (+)NCBIRGSC3.4rn4RGSC3.4
Celera1941,436,677 - 41,450,937 (+)NCBICelera
Cytogenetic Map19q12NCBI
NUDT7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1677,722,492 - 77,742,260 (+)EnsemblGRCh38hg38GRCh38
GRCh381677,722,514 - 77,742,260 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371677,756,411 - 77,776,157 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361676,313,912 - 76,333,655 (+)NCBINCBI36hg18NCBI36
Celera1662,054,090 - 62,073,833 (+)NCBI
Cytogenetic Map16q23.1NCBI
HuRef1663,512,539 - 63,532,315 (+)NCBIHuRef
CHM1_11679,167,909 - 79,187,677 (+)NCBICHM1_1
Nudt7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398114,860,314 - 114,881,471 (+)NCBIGRCm39mm39
GRCm39 Ensembl8114,860,297 - 114,881,479 (+)Ensembl
GRCm388114,133,574 - 114,154,731 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8114,133,557 - 114,154,739 (+)EnsemblGRCm38mm10GRCm38
MGSCv378116,657,479 - 116,676,205 (+)NCBIGRCm37mm9NCBIm37
MGSCv368117,019,592 - 117,038,289 (+)NCBImm8
Celera8118,345,752 - 118,364,538 (+)NCBICelera
Cytogenetic Map8E1NCBI
Nudt7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955522944,565 - 960,244 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955522945,186 - 960,094 (+)NCBIChiLan1.0ChiLan1.0
NUDT7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11677,747,944 - 77,767,687 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1677,747,863 - 77,801,651 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01658,312,917 - 58,333,256 (+)NCBIMhudiblu_PPA_v0panPan3
NUDT7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1573,515,819 - 73,527,780 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl573,516,166 - 73,527,716 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha573,463,629 - 73,475,592 (-)NCBI
ROS_Cfam_1.0573,822,491 - 73,834,439 (-)NCBI
UMICH_Zoey_3.1573,762,630 - 73,774,557 (-)NCBI
UNSW_CanFamBas_1.0573,598,591 - 73,610,719 (-)NCBI
UU_Cfam_GSD_1.0574,082,829 - 74,094,799 (-)NCBI
Nudt7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934933,496,220 - 33,509,844 (-)NCBI
SpeTri2.0NW_00493647526,079,298 - 26,095,466 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NUDT7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl610,158,688 - 10,173,980 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1610,161,959 - 10,174,006 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2610,102,285 - 10,114,189 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NUDT7
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1563,212,163 - 63,231,465 (+)NCBI
ChlSab1.1 Ensembl563,212,226 - 63,231,650 (+)Ensembl
Nudt7
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247469,228,656 - 9,242,808 (-)NCBI

Position Markers
D19Rat90  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21942,130,309 - 42,130,534 (+)MAPPER
Rnor_6.01946,460,372 - 46,460,596NCBIRnor6.0
Rnor_5.01957,283,283 - 57,283,507UniSTSRnor5.0
RGSC_v3.41944,186,387 - 44,186,608RGDRGSC3.4
RGSC_v3.41944,186,388 - 44,186,612UniSTSRGSC3.4
RGSC_v3.11944,191,268 - 44,191,489RGD
Celera1941,441,228 - 41,441,452UniSTS
RH 3.4 Map19554.8RGD
RH 3.4 Map19554.8UniSTS
RH 2.0 Map19570.4RGD
FHH x ACI Map1933.46RGD
Cytogenetic Map19q12UniSTS
RH130335  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21942,139,774 - 42,139,994 (+)MAPPER
Rnor_6.01946,469,826 - 46,470,045NCBIRnor6.0
Rnor_5.01957,292,798 - 57,293,017UniSTSRnor5.0
RGSC_v3.41944,196,728 - 44,196,947UniSTSRGSC3.4
Celera1941,450,693 - 41,450,912UniSTS
RH 3.4 Map19549.7UniSTS
Cytogenetic Map19q12UniSTS
RH133169  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21942,138,386 - 42,138,602 (+)MAPPER
Rnor_6.01946,468,450 - 46,468,665NCBIRnor6.0
Rnor_5.01957,291,361 - 57,291,576UniSTSRnor5.0
RGSC_v3.41944,194,466 - 44,194,681UniSTSRGSC3.4
Celera1941,449,303 - 41,449,518UniSTS
RH 3.4 Map19586.3UniSTS
Cytogenetic Map19q12UniSTS


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61447Tcas1Tongue tumor susceptibility QTL 16.08tongue integrity trait (VT:0010553)squamous cell carcinoma of the tongue maximum tumor diameter (CMO:0001875)19195770746957707Rat
7247442Uae39Urinary albumin excretion QTL 39urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)19243296347217667Rat
724566Uae12Urinary albumin excretion QTL 125urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19243296362275575Rat
9589102Slep13Serum leptin concentration QTL 134.630.001blood leptin amount (VT:0005667)plasma leptin level (CMO:0000781)19370183548701835Rat
8694186Bw152Body weight QTL 1523.340.001body mass (VT:0001259)body weight gain (CMO:0000420)19370183548701835Rat
1331737Uae29Urinary albumin excretion QTL 295.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19650676160220581Rat
724518Uae19Urinary albumin excretion QTL 195.5urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)19807254547318201Rat
61423Cia14Collagen induced arthritis QTL 143joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)191130392747879277Rat
1331788Rf45Renal function QTL 452.818kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)191702800352538299Rat
1578764Stresp19Stress response QTL 193.60.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)191899398262275575Rat
7411549Bw130Body weight QTL 13050.001body mass (VT:0001259)body weight gain (CMO:0000420)191917749562275575Rat
2298478Eau8Experimental allergic uveoretinitis QTL 80.0163uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)192140778762275575Rat
61350Bp32Blood pressure QTL 320.012arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)192481825762275575Rat
724546Kidm3Kidney mass QTL 33.1kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)193299439262275575Rat
1358200Insglur2Insulin/glucose ratio QTL 24.1blood glucose amount (VT:0000188)serum insulin level (CMO:0000358)193791679960220451Rat
1358200Insglur2Insulin/glucose ratio QTL 24.1blood glucose amount (VT:0000188)serum glucose level (CMO:0000543)193791679960220451Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:303
Count of miRNA genes:194
Interacting mature miRNAs:230
Transcripts:ENSRNOT00000034012
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 1 29 22 18 4 18 8 11 10 31 20 3 8
Low 2 14 35 23 15 23 64 4 20 8
Below cutoff 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001305426 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001305427 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006255677 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017601319 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017601320 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017601321 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039097863 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039097864 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039097865 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039097866 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039097867 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CB582462 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473972 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FM098914 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FM122430 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FM141049 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000313 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000034012   ⟹   ENSRNOP00000032779
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1946,455,761 - 46,470,070 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000093238   ⟹   ENSRNOP00000076192
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1946,455,878 - 46,469,625 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000093392   ⟹   ENSRNOP00000076103
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1946,455,859 - 46,482,050 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000093714   ⟹   ENSRNOP00000076259
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1946,465,647 - 46,466,119 (+)Ensembl
RefSeq Acc Id: NM_001305426   ⟹   NP_001292355
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21942,125,759 - 42,140,019 (+)NCBI
Rnor_6.01946,455,823 - 46,470,070 (+)NCBI
Celera1941,436,677 - 41,450,937 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001305427   ⟹   NP_001292356
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21942,125,759 - 42,140,019 (+)NCBI
Rnor_6.01946,455,823 - 46,470,070 (+)NCBI
Celera1941,436,677 - 41,450,937 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006255677   ⟹   XP_006255739
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01946,455,746 - 46,470,070 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017601319   ⟹   XP_017456808
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01946,455,746 - 46,470,070 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017601320   ⟹   XP_017456809
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01946,455,745 - 46,470,070 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017601321   ⟹   XP_017456810
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21942,125,679 - 42,140,019 (+)NCBI
Rnor_6.01946,455,747 - 46,470,070 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039097863   ⟹   XP_038953791
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21942,125,679 - 42,140,019 (+)NCBI
RefSeq Acc Id: XM_039097864   ⟹   XP_038953792
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21942,128,743 - 42,140,019 (+)NCBI
RefSeq Acc Id: XM_039097865   ⟹   XP_038953793
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21942,128,743 - 42,140,019 (+)NCBI
RefSeq Acc Id: XM_039097866   ⟹   XP_038953794
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21942,128,743 - 42,140,019 (+)NCBI
RefSeq Acc Id: XM_039097867   ⟹   XP_038953795
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21942,125,679 - 42,151,198 (+)NCBI
Reference Sequences
RefSeq Acc Id: XP_006255739   ⟸   XM_006255677
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: NP_001292356   ⟸   NM_001305427
- Peptide Label: isoform 2
- Sequence:
RefSeq Acc Id: NP_001292355   ⟸   NM_001305426
- Peptide Label: isoform 1
- Sequence:
RefSeq Acc Id: XP_017456809   ⟸   XM_017601320
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_017456808   ⟸   XM_017601319
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017456810   ⟸   XM_017601321
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: ENSRNOP00000032779   ⟸   ENSRNOT00000034012
RefSeq Acc Id: ENSRNOP00000076259   ⟸   ENSRNOT00000093714
RefSeq Acc Id: ENSRNOP00000076103   ⟸   ENSRNOT00000093392
RefSeq Acc Id: ENSRNOP00000076192   ⟸   ENSRNOT00000093238
RefSeq Acc Id: XP_038953795   ⟸   XM_039097867
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038953791   ⟸   XM_039097863
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038953792   ⟸   XM_039097864
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038953793   ⟸   XM_039097865
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038953794   ⟸   XM_039097866
- Peptide Label: isoform X5
Protein Domains
Nudix hydrolase

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701168
Promoter ID:EPDNEW_R11685
Type:initiation region
Name:Nudt7_1
Description:nudix hydrolase 7
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01946,455,808 - 46,455,868EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN/SsN (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Buf/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
F344/NCrl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
FHH/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
GH/OmrMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/Ox (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LE/Stm (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
M520/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MHS/Gib (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
SBH/Ygl (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHRSP/Gcrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/Gcrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306719 AgrOrtholog
Ensembl Genes ENSRNOG00000011976 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000032779 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOP00000076103 UniProtKB/TrEMBL
  ENSRNOP00000076192 UniProtKB/TrEMBL
  ENSRNOP00000076259 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000034012 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOT00000093238 UniProtKB/TrEMBL
  ENSRNOT00000093392 UniProtKB/TrEMBL
  ENSRNOT00000093714 UniProtKB/TrEMBL
InterPro NUDIX_hydrolase_dom UniProtKB/TrEMBL
  NUDIX_hydrolase_dom-like UniProtKB/TrEMBL
  NUDIX_hydrolase_NudL_CS UniProtKB/TrEMBL
NCBI Gene 361413 ENTREZGENE
Pfam NUDIX UniProtKB/TrEMBL
PhenoGen Nudt7 PhenoGen
PROSITE NUDIX UniProtKB/TrEMBL
  NUDIX_COA UniProtKB/TrEMBL
Superfamily-SCOP NUDIX_hydrolase UniProtKB/TrEMBL
UniProt A0A1W2Q618_RAT UniProtKB/TrEMBL
  A0A1W2Q6B7_RAT UniProtKB/TrEMBL
  A0A1W2Q6F7_RAT UniProtKB/TrEMBL
  D3ZV74_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-12-10 Nudt7  nudix hydrolase 7  Nudt7  nudix (nucleoside diphosphate linked moiety X)-type motif 7  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2014-01-14 Nudt7  nudix (nucleoside diphosphate linked moiety X)-type motif 7  LOC102555567  peroxisomal coenzyme A diphosphatase NUDT7-like  Data Merged 737654 APPROVED
2013-12-18 LOC102555567  peroxisomal coenzyme A diphosphatase NUDT7-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-04-30 Nudt7  nudix (nucleoside diphosphate linked moiety X)-type motif 7   Nudt7_predicted  nudix (nucleoside diphosphate linked moiety X)-type motif 7 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Nudt7_predicted  nudix (nucleoside diphosphate linked moiety X)-type motif 7 (predicted)      Symbol and Name status set to approved 70820 APPROVED