Nudt7 (nudix hydrolase 7) - Rat Genome Database

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Gene: Nudt7 (nudix hydrolase 7) Rattus norvegicus
Analyze
Symbol: Nudt7
Name: nudix hydrolase 7
RGD ID: 1306719
Description: Predicted to enable coenzyme A diphosphatase activity; magnesium ion binding activity; and snoRNA binding activity. Predicted to be involved in purine nucleoside bisphosphate catabolic process. Predicted to act upstream of or within acetyl-CoA catabolic process and brown fat cell differentiation. Predicted to be active in peroxisome. Orthologous to human NUDT7 (nudix hydrolase 7); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 3,3',5-triiodo-L-thyronine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC102555567; LOC361413; nudix (nucleoside diphosphate linked moiety X)-type motif 7; nudix motif 7; peroxisomal coenzyme A diphosphatase NUDT7; peroxisomal coenzyme A diphosphatase NUDT7-like
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81959,034,808 - 59,049,148 (+)NCBIGRCr8
mRatBN7.21942,125,679 - 42,151,198 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1942,125,711 - 42,151,081 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1948,949,985 - 48,964,251 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01949,603,256 - 49,617,524 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01951,851,962 - 51,866,240 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01946,455,745 - 46,470,070 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1946,455,761 - 46,482,050 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01957,278,677 - 57,293,046 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41944,181,782 - 44,196,976 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1941,436,677 - 41,450,937 (+)NCBICelera
Cytogenetic Map19q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (EXP)
2-acetamidofluorene  (ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3,3',5-triiodo-L-thyronine  (EXP)
4,4'-diaminodiphenylmethane  (EXP)
4,4'-sulfonyldiphenol  (ISO)
4-\{[(5,5,8,8-tetramethyl-5,6,7,8-tetrahydronaphthalen-2-yl)carbonyl]amino\}benzoic acid  (ISO)
4-amino-2,6-dinitrotoluene  (EXP)
5-aza-2'-deoxycytidine  (ISO)
acrylamide  (ISO)
aflatoxin B1  (EXP,ISO)
aldrin  (ISO)
all-trans-retinoic acid  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene  (ISO)
bisphenol A  (EXP)
cadmium dichloride  (EXP)
calcitriol  (ISO)
carbon nanotube  (ISO)
choline  (ISO)
ciguatoxin CTX1B  (ISO)
cisplatin  (ISO)
clofibric acid  (EXP)
copper(II) sulfate  (ISO)
cyclosporin A  (ISO)
diarsenic trioxide  (ISO)
dibutyl phthalate  (EXP)
dicrotophos  (ISO)
dioxygen  (ISO)
diquat  (ISO)
dorsomorphin  (ISO)
epoxiconazole  (ISO)
ethanol  (ISO)
finasteride  (EXP)
fipronil  (EXP)
flutamide  (EXP)
folic acid  (ISO)
genistein  (EXP)
gentamycin  (EXP)
hydralazine  (ISO)
indometacin  (EXP)
inulin  (ISO)
L-methionine  (ISO)
leflunomide  (EXP)
methylmercury chloride  (ISO)
monosodium L-glutamate  (ISO)
N-nitrosodiethylamine  (EXP,ISO)
nefazodone  (EXP)
nickel atom  (ISO)
nickel sulfate  (ISO)
nimesulide  (EXP)
ozone  (ISO)
paracetamol  (EXP,ISO)
parathion  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (EXP)
phenobarbital  (ISO)
pirinixic acid  (EXP,ISO)
pregnenolone 16alpha-carbonitrile  (ISO)
propiconazole  (ISO)
resveratrol  (ISO)
rotenone  (ISO)
SB 431542  (ISO)
senecionine  (ISO)
silicon dioxide  (ISO)
sodium arsenate  (ISO)
streptozocin  (ISO)
sulforaphane  (ISO)
temozolomide  (ISO)
tetrachloromethane  (ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
trichostatin A  (ISO)
Triptolide  (ISO)
triptonide  (ISO)
trovafloxacin  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vincristine  (ISO)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
peroxisome  (ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:11415433   PMID:12790796   PMID:18492766   PMID:20178365   PMID:21070968  


Genomics

Comparative Map Data
Nudt7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81959,034,808 - 59,049,148 (+)NCBIGRCr8
mRatBN7.21942,125,679 - 42,151,198 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1942,125,711 - 42,151,081 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1948,949,985 - 48,964,251 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01949,603,256 - 49,617,524 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01951,851,962 - 51,866,240 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01946,455,745 - 46,470,070 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1946,455,761 - 46,482,050 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01957,278,677 - 57,293,046 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41944,181,782 - 44,196,976 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1941,436,677 - 41,450,937 (+)NCBICelera
Cytogenetic Map19q12NCBI
NUDT7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381677,722,514 - 77,742,260 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1677,722,492 - 77,742,260 (+)EnsemblGRCh38hg38GRCh38
GRCh371677,756,411 - 77,776,157 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361676,313,912 - 76,333,655 (+)NCBINCBI36Build 36hg18NCBI36
Celera1662,054,090 - 62,073,833 (+)NCBICelera
Cytogenetic Map16q23.1NCBI
HuRef1663,512,539 - 63,532,315 (+)NCBIHuRef
CHM1_11679,167,909 - 79,187,677 (+)NCBICHM1_1
T2T-CHM13v2.01683,778,636 - 83,798,355 (+)NCBIT2T-CHM13v2.0
Nudt7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398114,860,314 - 114,881,471 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8114,860,297 - 114,881,479 (+)EnsemblGRCm39 Ensembl
GRCm388114,133,574 - 114,154,731 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8114,133,557 - 114,154,739 (+)EnsemblGRCm38mm10GRCm38
MGSCv378116,657,479 - 116,676,205 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv368117,019,592 - 117,038,289 (+)NCBIMGSCv36mm8
Celera8118,345,752 - 118,364,538 (+)NCBICelera
Cytogenetic Map8E1NCBI
cM Map860.53NCBI
Nudt7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955522944,565 - 960,244 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955522945,186 - 960,094 (+)NCBIChiLan1.0ChiLan1.0
NUDT7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21887,455,807 - 87,477,524 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11693,375,260 - 93,396,912 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01658,312,917 - 58,333,256 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11677,747,944 - 77,767,687 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1677,747,863 - 77,801,651 (+)Ensemblpanpan1.1panPan2
NUDT7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1573,515,819 - 73,527,780 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl573,516,166 - 73,527,716 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha573,463,629 - 73,475,592 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0573,822,491 - 73,834,439 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl573,822,818 - 73,834,399 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1573,762,630 - 73,774,557 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0573,598,591 - 73,610,719 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0574,082,829 - 74,094,799 (-)NCBIUU_Cfam_GSD_1.0
Nudt7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934933,496,220 - 33,509,844 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647526,079,275 - 26,089,889 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647526,079,298 - 26,095,466 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NUDT7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl610,158,688 - 10,173,980 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1610,161,959 - 10,174,006 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2610,102,285 - 10,114,189 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NUDT7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1563,212,163 - 63,231,465 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl563,212,226 - 63,231,650 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604712,817,483 - 12,836,766 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nudt7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247469,228,321 - 9,242,830 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247469,228,656 - 9,242,808 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Nudt7
222 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:303
Count of miRNA genes:194
Interacting mature miRNAs:230
Transcripts:ENSRNOT00000034012
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
9589102Slep13Serum leptin concentration QTL 134.630.001blood leptin amount (VT:0005667)plasma leptin level (CMO:0000781)1956937445569374Rat
8694186Bw152Body weight QTL 1523.340.001body mass (VT:0001259)body weight gain (CMO:0000420)1956937445569374Rat
7247442Uae39Urinary albumin excretion QTL 39urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)19218792746708701Rat
724566Uae12Urinary albumin excretion QTL 125urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19218792756457239Rat
61447Tcas1Tongue tumor susceptibility QTL 16.08tongue integrity trait (VT:0010553)squamous cell carcinoma of the tongue maximum tumor diameter (CMO:0001875)19231612147316121Rat
2317848Alcrsp21Alcohol response QTL 211.8999999761581420.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)19320477748204777Rat
1331737Uae29Urinary albumin excretion QTL 295.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19409615555283277Rat
724518Uae19Urinary albumin excretion QTL 195.5urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)19745724942983518Rat
61423Cia14Collagen induced arthritis QTL 143joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)191082797043544039Rat
7411549Bw130Body weight QTL 13050.001body mass (VT:0001259)body weight gain (CMO:0000420)191545586057337602Rat
1331788Rf45Renal function QTL 452.818kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)191560502346559041Rat
1578764Stresp19Stress response QTL 193.60.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)191563020157337602Rat
2298478Eau8Experimental allergic uveoretinitis QTL 80.0163uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)191715443357337602Rat
61350Bp32Blood pressure QTL 320.012arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)192048357557337602Rat
724546Kidm3Kidney mass QTL 33.1kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)192932249057337602Rat
1358200Insglur2Insulin/glucose ratio QTL 24.1blood glucose amount (VT:0000188)serum insulin level (CMO:0000358)193383821455283146Rat
1358200Insglur2Insulin/glucose ratio QTL 24.1blood glucose amount (VT:0000188)serum glucose level (CMO:0000543)193383821455283146Rat

Markers in Region
D19Rat90  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21942,130,309 - 42,130,534 (+)MAPPERmRatBN7.2
Rnor_6.01946,460,372 - 46,460,596NCBIRnor6.0
Rnor_5.01957,283,283 - 57,283,507UniSTSRnor5.0
RGSC_v3.41944,186,387 - 44,186,608RGDRGSC3.4
RGSC_v3.41944,186,388 - 44,186,612UniSTSRGSC3.4
RGSC_v3.11944,191,268 - 44,191,489RGD
Celera1941,441,228 - 41,441,452UniSTS
RH 3.4 Map19554.8RGD
RH 3.4 Map19554.8UniSTS
RH 2.0 Map19570.4RGD
FHH x ACI Map1933.46RGD
Cytogenetic Map19q12UniSTS
RH130335  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21942,139,774 - 42,139,994 (+)MAPPERmRatBN7.2
Rnor_6.01946,469,826 - 46,470,045NCBIRnor6.0
Rnor_5.01957,292,798 - 57,293,017UniSTSRnor5.0
RGSC_v3.41944,196,728 - 44,196,947UniSTSRGSC3.4
Celera1941,450,693 - 41,450,912UniSTS
RH 3.4 Map19549.7UniSTS
Cytogenetic Map19q12UniSTS
RH133169  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21942,138,386 - 42,138,602 (+)MAPPERmRatBN7.2
Rnor_6.01946,468,450 - 46,468,665NCBIRnor6.0
Rnor_5.01957,291,361 - 57,291,576UniSTSRnor5.0
RGSC_v3.41944,194,466 - 44,194,681UniSTSRGSC3.4
Celera1941,449,303 - 41,449,518UniSTS
RH 3.4 Map19586.3UniSTS
Cytogenetic Map19q12UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 1 29 22 18 4 18 8 11 10 31 20 3 8
Low 2 14 35 23 15 23 64 4 20 8
Below cutoff 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001305426 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001305427 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006255677 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017601319 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017601320 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017601321 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039097863 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039097864 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063278139 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063278140 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063278141 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CB582462 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473972 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FM098914 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FM122430 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FM141049 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000034012   ⟹   ENSRNOP00000032779
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1942,125,711 - 42,140,014 (+)Ensembl
Rnor_6.0 Ensembl1946,455,761 - 46,470,070 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000093238   ⟹   ENSRNOP00000076192
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1942,125,752 - 42,140,019 (+)Ensembl
Rnor_6.0 Ensembl1946,455,878 - 46,469,625 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000093392   ⟹   ENSRNOP00000076103
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1942,125,752 - 42,151,081 (+)Ensembl
Rnor_6.0 Ensembl1946,455,859 - 46,482,050 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000093714   ⟹   ENSRNOP00000076259
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1946,465,647 - 46,466,119 (+)Ensembl
RefSeq Acc Id: NM_001305426   ⟹   NP_001292355
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81959,034,888 - 59,049,148 (+)NCBI
mRatBN7.21942,125,759 - 42,140,019 (+)NCBI
Rnor_6.01946,455,823 - 46,470,070 (+)NCBI
Celera1941,436,677 - 41,450,937 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001305427   ⟹   NP_001292356
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81959,034,888 - 59,049,148 (+)NCBI
mRatBN7.21942,125,759 - 42,140,019 (+)NCBI
Rnor_6.01946,455,823 - 46,470,070 (+)NCBI
Celera1941,436,677 - 41,450,937 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017601321   ⟹   XP_017456810
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81959,034,808 - 59,049,148 (+)NCBI
mRatBN7.21942,125,679 - 42,140,019 (+)NCBI
Rnor_6.01946,455,747 - 46,470,070 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039097863   ⟹   XP_038953791
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81959,034,808 - 59,049,148 (+)NCBI
mRatBN7.21942,125,679 - 42,140,019 (+)NCBI
RefSeq Acc Id: XM_039097864   ⟹   XP_038953792
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81959,037,725 - 59,049,148 (+)NCBI
mRatBN7.21942,128,743 - 42,140,019 (+)NCBI
RefSeq Acc Id: XM_063278139   ⟹   XP_063134209
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81959,034,808 - 59,049,148 (+)NCBI
RefSeq Acc Id: XM_063278140   ⟹   XP_063134210
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81959,034,808 - 59,049,148 (+)NCBI
RefSeq Acc Id: XM_063278141   ⟹   XP_063134211
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81959,034,808 - 59,049,148 (+)NCBI
RefSeq Acc Id: NP_001292356   ⟸   NM_001305427
- Peptide Label: isoform 2
- UniProtKB: A6IZE0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001292355   ⟸   NM_001305426
- Peptide Label: isoform 1
- UniProtKB: A0A1W2Q6B7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017456810   ⟸   XM_017601321
- Peptide Label: isoform X5
- UniProtKB: A6IZD8 (UniProtKB/TrEMBL),   A6IZD7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000032779   ⟸   ENSRNOT00000034012
RefSeq Acc Id: ENSRNOP00000076259   ⟸   ENSRNOT00000093714
RefSeq Acc Id: ENSRNOP00000076103   ⟸   ENSRNOT00000093392
RefSeq Acc Id: ENSRNOP00000076192   ⟸   ENSRNOT00000093238
RefSeq Acc Id: XP_038953791   ⟸   XM_039097863
- Peptide Label: isoform X3
- UniProtKB: A6IZD7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038953792   ⟸   XM_039097864
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063134209   ⟸   XM_063278139
- Peptide Label: isoform X1
- UniProtKB: A6IZD7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063134210   ⟸   XM_063278140
- Peptide Label: isoform X2
- UniProtKB: A6IZD7 (UniProtKB/TrEMBL),   D3ZV74 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063134211   ⟸   XM_063278141
- Peptide Label: isoform X4
- UniProtKB: A6IZD7 (UniProtKB/TrEMBL)
Protein Domains
Nudix hydrolase

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZV74-F1-model_v2 AlphaFold D3ZV74 1-260 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701168
Promoter ID:EPDNEW_R11685
Type:initiation region
Name:Nudt7_1
Description:nudix hydrolase 7
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01946,455,808 - 46,455,868EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306719 AgrOrtholog
BioCyc Gene G2FUF-5599 BioCyc
Ensembl Genes ENSRNOG00000011976 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000034012 ENTREZGENE
  ENSRNOT00000034012.7 UniProtKB/TrEMBL
  ENSRNOT00000093238 ENTREZGENE
  ENSRNOT00000093238.2 UniProtKB/TrEMBL
  ENSRNOT00000093392.2 UniProtKB/TrEMBL
Gene3D-CATH Nucleoside Triphosphate Pyrophosphohydrolase UniProtKB/TrEMBL
InterPro CoAse UniProtKB/TrEMBL
  NUDIX_hydrolase_dom UniProtKB/TrEMBL
  NUDIX_hydrolase_dom-like UniProtKB/TrEMBL
  NUDIX_hydrolase_NudL_CS UniProtKB/TrEMBL
NCBI Gene 361413 ENTREZGENE
PANTHER PEROXISOMAL COENZYME A DIPHOSPHATASE NUDT7 UniProtKB/TrEMBL
  PTHR12992 UniProtKB/TrEMBL
Pfam NUDIX UniProtKB/TrEMBL
PhenoGen Nudt7 PhenoGen
PROSITE NUDIX UniProtKB/TrEMBL
  NUDIX_COA UniProtKB/TrEMBL
RatGTEx ENSRNOG00000011976 RatGTEx
Superfamily-SCOP NUDIX_hydrolase UniProtKB/TrEMBL
UniProt A0A1W2Q618_RAT UniProtKB/TrEMBL
  A0A1W2Q6B7 ENTREZGENE, UniProtKB/TrEMBL
  A6IZD6_RAT UniProtKB/TrEMBL
  A6IZD7 ENTREZGENE, UniProtKB/TrEMBL
  A6IZD8 ENTREZGENE, UniProtKB/TrEMBL
  A6IZE0 ENTREZGENE, UniProtKB/TrEMBL
  D3ZV74 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-12-10 Nudt7  nudix hydrolase 7  Nudt7  nudix (nucleoside diphosphate linked moiety X)-type motif 7  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2014-01-14 Nudt7  nudix (nucleoside diphosphate linked moiety X)-type motif 7  LOC102555567  peroxisomal coenzyme A diphosphatase NUDT7-like  Data merged from RGD:7636577 737654 APPROVED
2013-12-18 LOC102555567  peroxisomal coenzyme A diphosphatase NUDT7-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-04-30 Nudt7  nudix (nucleoside diphosphate linked moiety X)-type motif 7   Nudt7_predicted  nudix (nucleoside diphosphate linked moiety X)-type motif 7 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Nudt7_predicted  nudix (nucleoside diphosphate linked moiety X)-type motif 7 (predicted)      Symbol and Name status set to approved 70820 APPROVED