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cytoplasmic ubiquitin ligase complex - Ontology Report - Rat Genome Database

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ONTOLOGY REPORT - ANNOTATIONS

Term:cytoplasmic ubiquitin ligase complex
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Accession:GO:0000153 term browser browse the term
Definition:A ubiquitin ligase complex found in the cytoplasm.

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cytoplasmic ubiquitin ligase complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hdac6 histone deacetylase 6 part_of ISO (PMID:11689694) RGD PMID:11689694 NCBI chr  X:14,550,645...14,572,445
Ensembl chr  X:14,551,044...14,572,441 		JBrowse link
G Plaa phospholipase A2, activating protein part_of ISO (PMID:11689694) RGD PMID:11689694 NCBI chr 5:109,428,600...109,460,373
Ensembl chr 5:109,428,265...109,460,282 		JBrowse link
G Vcp valosin-containing protein part_of ISO (PMID:11689694) RGD PMID:11689694 NCBI chr 5:62,005,984...62,025,387
Ensembl chr 5:57,210,168...57,229,571 		JBrowse link
Hrd1p ubiquitin ligase complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fam8a1 family with sequence similarity 8, member A1 part_of ISO
IEA 		(PMID:28827405)
GO_REF:0000107 		RGD
Ensembl		 PMID:28827405 GO_REF:0000107 NCBI chr17:18,026,601...18,035,509
Ensembl chr17:18,026,601...18,035,470 		JBrowse link
G Herpud1 homocysteine inducible ER protein with ubiquitin like domain 1 part_of ISO
IEA 		(PMID:28827405)
GO_REF:0000107 		RGD
Ensembl		 PMID:28827405 GO_REF:0000107 NCBI chr19:10,598,411...10,609,002
Ensembl chr19:10,598,417...10,618,424 		JBrowse link
G Os9 OS9, endoplasmic reticulum lectin part_of ISO
IEA 		(PMID:28827405)
GO_REF:0000107 		RGD
Ensembl		 PMID:28827405 GO_REF:0000107 NCBI chr 7:62,915,498...62,957,591
Ensembl chr 7:62,915,515...62,943,745 		JBrowse link
G Sel1l SEL1L adaptor subunit of SYVN1 ubiquitin ligase part_of ISO
IEA 		(PMID:28827405)
GO_REF:0000107 		RGD
Ensembl		 PMID:28827405 GO_REF:0000107 NCBI chr 6:110,735,450...110,779,695
Ensembl chr 6:110,735,450...110,779,648 		JBrowse link
G Syvn1 synoviolin 1 part_of ISO
IEA 		(PMID:28827405)
GO_REF:0000107 		RGD
Ensembl		 PMID:28827405 GO_REF:0000107 NCBI chr 1:203,339,235...203,346,137
Ensembl chr 1:203,339,619...203,346,152 		JBrowse link
G Ube2j1 ubiquitin-conjugating enzyme E2, J1 part_of ISO
IEA 		(PMID:28827405)
GO_REF:0000107 		RGD
Ensembl		 PMID:28827405 GO_REF:0000107 NCBI chr 5:47,422,476...47,441,476
Ensembl chr 5:47,422,587...47,441,461 		JBrowse link
Hrd1p ubiquitin ligase ERAD-L complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sel1l SEL1L adaptor subunit of SYVN1 ubiquitin ligase part_of ISO
IEA
ISS 		(PMID:26471130)
GO_REF:0000107
GO_REF:0000024 		RGD
Ensembl
UniProt		 PMID:26471130 GO_REF:0000024 GO_REF:0000107 NCBI chr 6:110,735,450...110,779,695
Ensembl chr 6:110,735,450...110,779,648 		JBrowse link
G Syvn1 synoviolin 1 part_of ISO
IEA 		(PMID:26471130), (PMID:28827405)
GO_REF:0000107 		RGD
Ensembl		 PMID:26471130 PMID:28827405 GO_REF:0000107 NCBI chr 1:203,339,235...203,346,137
Ensembl chr 1:203,339,619...203,346,152 		JBrowse link
VCB complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07002622.1 part_of IBA
IEA 		GO_REF:0000033
GO_REF:0000002 		GO_Central
InterPro		 GO_REF:0000002 GO_REF:0000033 Ensembl chr 1:76,426,358...76,427,521 JBrowse link
G Cul2 cullin 2 IDA RGD PMID:10213691 RGD:2301042 NCBI chr17:54,169,093...54,210,197
Ensembl chr17:54,169,086...54,209,968 		JBrowse link
G Elob elongin B part_of IDA
IEA
IBA 		GO_REF:0000002
GO_REF:0000033 		InterPro
GO_Central
RGD		 PMID:10213691 GO_REF:0000002 GO_REF:0000033, RGD:2301042 NCBI chr10:12,848,830...12,853,897
Ensembl chr10:12,848,827...12,853,635 		JBrowse link
G Elob-ps13 elongin B, pseudogene 13 part_of IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:21,021,825...21,022,305
Ensembl chr 3:21,021,861...21,022,169
Ensembl chr 3:21,021,861...21,022,169 		JBrowse link
G Elob-ps14 elongin B, pseudogene 14 part_of IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:20,995,056...20,995,790 JBrowse link
G Elob-ps15 elongin B, pseudogene 15 part_of IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:21,025,194...21,026,182 JBrowse link
G Elob-ps3 elongin B, pseudogene 3 part_of IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:21,002,336...21,003,559 JBrowse link
G Elob-ps4 elongin B, pseudogene 4 part_of IBA
IEA 		GO_REF:0000033
GO_REF:0000002 		GO_Central
InterPro		 GO_REF:0000002 GO_REF:0000033 NCBI chr10:73,749,869...73,750,223
Ensembl chr10:73,747,952...73,750,403 		JBrowse link
G Elob-ps5 elongin B, pseudogene 5 part_of IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:21,029,142...21,030,159 JBrowse link
G Elob-ps7 elongin B, pseudogene 7 part_of IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:20,990,504...20,992,516 JBrowse link
G Elob-ps8 elongin B, pseudogene 8 part_of IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:21,017,264...21,018,340 JBrowse link
G Elobl7 elongin B like 7 part_of IBA
IEA 		GO_REF:0000033
GO_REF:0000002 		GO_Central
InterPro		 GO_REF:0000002 GO_REF:0000033 NCBI chr 8:110,995,164...110,995,624
Ensembl chr 8:110,989,940...110,995,640 		JBrowse link
G Elobl9 elongin B like 9 part_of IBA
IEA 		GO_REF:0000033
GO_REF:0000002 		GO_Central
InterPro		 GO_REF:0000002 GO_REF:0000033 NCBI chr10:73,765,641...73,765,970
Ensembl chr10:73,765,617...73,765,970 		JBrowse link
G Eloc elongin C IDA RGD PMID:10213691 RGD:2301042 NCBI chr 5:2,661,527...2,677,893
Ensembl chr 5:2,661,724...2,677,890
Ensembl chr20:2,661,724...2,677,890 		JBrowse link
G ENSRNOG00000063973 part_of IBA
IEA 		GO_REF:0000033
GO_REF:0000002 		GO_Central
InterPro		 GO_REF:0000002 GO_REF:0000033 Ensembl chr  X:115,936,708...115,937,864 JBrowse link
G ENSRNOG00000064158 part_of IBA
IEA 		GO_REF:0000033
GO_REF:0000002 		GO_Central
InterPro		 GO_REF:0000002 GO_REF:0000033 Ensembl chr 3:21,002,979...21,003,786 JBrowse link
G ENSRNOG00000065620 part_of IBA
IEA 		GO_REF:0000033
GO_REF:0000002 		GO_Central
InterPro		 GO_REF:0000002 GO_REF:0000033 Ensembl chr 3:21,006,946...21,007,741 JBrowse link
G ENSRNOG00000066103 part_of IBA
IEA 		GO_REF:0000033
GO_REF:0000002 		GO_Central
InterPro		 GO_REF:0000002 GO_REF:0000033 Ensembl chr 3:21,025,824...21,026,620 JBrowse link
G ENSRNOG00000066836 part_of IBA
IEA 		GO_REF:0000033
GO_REF:0000002 		GO_Central
InterPro		 GO_REF:0000002 GO_REF:0000033 Ensembl chr 8:3,228,866...3,234,903 JBrowse link
G ENSRNOG00000068416 part_of IBA
IEA 		GO_REF:0000033
GO_REF:0000002 		GO_Central
InterPro		 GO_REF:0000002 GO_REF:0000033 Ensembl chr 3:21,017,907...21,018,712 JBrowse link
G ENSRNOG00000069411 part_of IBA
IEA 		GO_REF:0000033
GO_REF:0000002 		GO_Central
InterPro		 GO_REF:0000002 GO_REF:0000033 Ensembl chr 3:21,029,748...21,030,080 JBrowse link
G ENSRNOG00000070656 part_of IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr 6:76,070,756...76,077,309 JBrowse link
G ENSRNOG00000071067 part_of IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr 4:126,816,739...126,817,049 JBrowse link
G LOC134480734 elongin-B-like part_of IBA
IEA 		GO_REF:0000033
GO_REF:0000002 		GO_Central
InterPro		 GO_REF:0000002 GO_REF:0000033
G LOC134486081 elongin-B-like part_of IEA GO_REF:0000002 InterPro GO_REF:0000002
G LOC134486082 elongin-B-like part_of IEA GO_REF:0000002 InterPro GO_REF:0000002
G LOC134486083 elongin-B-like part_of IEA GO_REF:0000002 InterPro GO_REF:0000002
G LOC134486084 elongin-B-like part_of IEA GO_REF:0000002 InterPro GO_REF:0000002
G LOC134486085 elongin-B-like part_of IEA GO_REF:0000002 InterPro GO_REF:0000002
G Neurl2 neuralized E3 ubiquitin protein ligase 2 part_of ISO (PMID:14960280) RGD PMID:14960280 NCBI chr 3:153,566,659...153,569,380
Ensembl chr 3:153,566,660...153,569,380 		JBrowse link
G Rbx1 ring-box 1 IDA RGD PMID:10213691 RGD:2301042 NCBI chr 7:112,976,863...113,001,051
Ensembl chr 7:112,990,835...113,001,051 		JBrowse link
G Vhl von Hippel-Lindau tumor suppressor part_of IDA
IBA 		GO_REF:0000033 GO_Central
RGD		 PMID:9122164 PMID:10213691 GO_REF:0000033, RGD:1559276, RGD:2301042 NCBI chr 4:146,772,483...146,779,376
Ensembl chr 4:146,772,468...146,779,377 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 21350
    cellular anatomical structure 21054
      cytoplasm 12301
        cytoplasmic ubiquitin ligase complex 41
          ER ubiquitin ligase complex + 6
          VCB complex 32
          cytoplasmic SCF ubiquitin ligase complex 0
Path 2
Term Annotations click to browse term
  cellular_component 21350
    protein-containing complex 6834
      catalytic complex 1961
        transferase complex 1009
          ubiquitin ligase complex 404
            cytoplasmic ubiquitin ligase complex 41
              ER ubiquitin ligase complex + 6
              VCB complex 32
              cytoplasmic SCF ubiquitin ligase complex 0
paths to the root