Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

ONTOLOGY REPORT - ANNOTATIONS

Term:cytoplasmic ubiquitin ligase complex
go back to main search page
Accession:GO:0000153 term browser browse the term
Definition:A ubiquitin ligase complex found in the cytoplasm.


show annotations for term's descendants           Sort by:
Hrd1p ubiquitin ligase complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fam8a1 family with sequence similarity 8, member A1 part_of ISO (PMID:28827405) RGD PMID:28827405 NCBI chr17:18,026,601...18,035,509
Ensembl chr17:18,026,601...18,035,470 		JBrowse link
G Herpud1 homocysteine inducible ER protein with ubiquitin like domain 1 part_of ISO (PMID:28827405) RGD PMID:28827405 NCBI chr19:10,604,360...10,624,168
Ensembl chr19:10,598,417...10,618,424 		JBrowse link
G Os9 OS9, endoplasmic reticulum lectin part_of ISO (PMID:28827405) RGD PMID:28827405 NCBI chr 7:62,915,498...62,957,591
Ensembl chr 7:62,915,515...62,943,745 		JBrowse link
G Sel1l SEL1L adaptor subunit of SYVN1 ubiquitin ligase part_of ISO (PMID:28827405) RGD PMID:28827405 NCBI chr 6:110,735,450...110,779,695
Ensembl chr 6:110,735,450...110,779,648 		JBrowse link
G Syvn1 synoviolin 1 part_of ISO (PMID:28827405) RGD PMID:28827405 NCBI chr 1:203,339,235...203,346,137
Ensembl chr 1:203,339,619...203,346,152 		JBrowse link
G Ube2j1 ubiquitin-conjugating enzyme E2, J1 part_of ISO (PMID:28827405) RGD PMID:28827405 NCBI chr 5:52,218,807...52,237,805
Ensembl chr 5:47,422,587...47,441,461 		JBrowse link
Hrd1p ubiquitin ligase ERAD-L complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sel1l SEL1L adaptor subunit of SYVN1 ubiquitin ligase part_of ISO
ISS		 (PMID:26471130)
GO_REF:0000024		 RGD
UniProt		 PMID:26471130 GO_REF:0000024 NCBI chr 6:110,735,450...110,779,695
Ensembl chr 6:110,735,450...110,779,648 		JBrowse link
G Syvn1 synoviolin 1 part_of ISO (PMID:26471130), (PMID:28827405) RGD PMID:26471130 PMID:28827405 NCBI chr 1:203,339,235...203,346,137
Ensembl chr 1:203,339,619...203,346,152 		JBrowse link
VCB complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07002622.1 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr 1:76,426,358...76,427,521 JBrowse link
G Cul2 cullin 2 IDA RGD PMID:10213691 RGD:2301042 NCBI chr17:58,864,274...58,905,447
Ensembl chr17:54,169,086...54,209,968 		JBrowse link
G Elob elongin B part_of IDA
IEA
IBA		 GO_REF:0000002
GO_REF:0000033		 InterPro
GO_Central
RGD		 PMID:10213691 GO_REF:0000002 GO_REF:0000033, RGD:2301042 NCBI chr10:13,353,413...13,358,484
Ensembl chr10:12,848,827...12,853,635 		JBrowse link
G Elob-ps13 elongin B, pseudogene 13 part_of IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:21,021,825...21,022,305
Ensembl chr 3:21,021,861...21,022,169
Ensembl chr 3:21,021,861...21,022,169 		JBrowse link
G Elob-ps14 elongin B, pseudogene 14 part_of IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:20,995,056...20,995,790 JBrowse link
G Elob-ps15 elongin B, pseudogene 15 part_of IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:21,025,194...21,026,182 JBrowse link
G Elob-ps3 elongin B, pseudogene 3 part_of IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:21,002,336...21,003,559 JBrowse link
G Elob-ps4 elongin B, pseudogene 4 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:73,749,869...73,750,223
Ensembl chr10:73,747,952...73,750,403 		JBrowse link
G Elob-ps5 elongin B, pseudogene 5 part_of IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:21,029,142...21,030,159 JBrowse link
G Elob-ps7 elongin B, pseudogene 7 part_of IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:20,990,504...20,992,516 JBrowse link
G Elob-ps8 elongin B, pseudogene 8 part_of IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:21,017,264...21,018,340 JBrowse link
G Elobl7 elongin B like 7 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:110,995,164...110,995,624
Ensembl chr 8:110,989,940...110,995,640 		JBrowse link
G Elobl9 elongin B like 9 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:73,765,641...73,765,970
Ensembl chr10:73,765,617...73,765,970 		JBrowse link
G Eloc elongin C IDA RGD PMID:10213691 RGD:2301042 NCBI chr 5:7,444,769...7,461,187
Ensembl chr 5:2,661,724...2,677,890
Ensembl chr20:2,661,724...2,677,890 		JBrowse link
G ENSRNOG00000063973 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr  X:115,936,708...115,937,864 JBrowse link
G ENSRNOG00000064158 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr 3:21,002,979...21,003,786 JBrowse link
G ENSRNOG00000065620 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr 3:21,006,946...21,007,741 JBrowse link
G ENSRNOG00000066103 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr 3:21,025,824...21,026,620 JBrowse link
G ENSRNOG00000066836 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr 8:3,228,866...3,234,903 JBrowse link
G ENSRNOG00000068416 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr 3:21,017,907...21,018,712 JBrowse link
G ENSRNOG00000069411 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr 3:21,029,748...21,030,080 JBrowse link
G ENSRNOG00000070656 part_of IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr 6:76,070,756...76,077,309 JBrowse link
G ENSRNOG00000071067 part_of IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr 4:126,816,739...126,817,049 JBrowse link
G LOC134480734 elongin-B-like part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033
G LOC134486081 elongin-B-like part_of IEA GO_REF:0000002 InterPro GO_REF:0000002
G LOC134486082 elongin-B-like part_of IEA GO_REF:0000002 InterPro GO_REF:0000002
G LOC134486083 elongin-B-like part_of IEA GO_REF:0000002 InterPro GO_REF:0000002
G LOC134486084 elongin-B-like part_of IEA GO_REF:0000002 InterPro GO_REF:0000002
G LOC134486085 elongin-B-like part_of IEA GO_REF:0000002 InterPro GO_REF:0000002
G Neurl2 neuralized E3 ubiquitin protein ligase 2 part_of ISO (PMID:14960280) RGD PMID:14960280 NCBI chr 3:153,566,659...153,569,380
Ensembl chr 3:153,566,660...153,569,380 		JBrowse link
G Rbx1 ring-box 1 IDA RGD PMID:10213691 RGD:2301042 NCBI chr 7:114,870,893...114,881,194
Ensembl chr 7:112,990,835...113,001,051 		JBrowse link
G Vhl von Hippel-Lindau tumor suppressor part_of IDA
IBA		 GO_REF:0000033 GO_Central
RGD		 PMID:9122164 PMID:10213691 GO_REF:0000033, RGD:1559276, RGD:2301042 NCBI chr 4:148,328,099...148,334,992
Ensembl chr 4:146,772,468...146,779,377 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 21329
    cellular anatomical structure 21034
      cytoplasm 12258
        cytoplasmic ubiquitin ligase complex 38
          ER ubiquitin ligase complex + 6
          VCB complex 32
          cytoplasmic SCF ubiquitin ligase complex 0
Path 2
Term Annotations click to browse term
  cellular_component 21329
    protein-containing complex 6791
      catalytic complex 1935
        transferase complex 977
          ubiquitin ligase complex 397
            cytoplasmic ubiquitin ligase complex 38
              ER ubiquitin ligase complex + 6
              VCB complex 32
              cytoplasmic SCF ubiquitin ligase complex 0
paths to the root