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primary ovarian insufficiency 16 - Ontology Report - Rat Genome Database

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RGD DISEASE ONTOLOGY - ANNOTATIONS

RGD uses the Human Disease Ontology (DO, https://disease-ontology.org/) for disease curation across species. RGD automatically downloads each new release of the ontology on a monthly basis. Some additional terms which are required for RGD's curation purposes but are not currently covered in the official version of DO have been added. As corresponding terms are added to DO, these custom terms are retired and the DO terms substituted in existing annotations and subsequently used for curation.
Term:primary ovarian insufficiency 16
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Accession:DOID:0080873 term browser browse the term
Definition:A primary ovarian insufficiency that is characterized by onset of amenorrhea early in the fourth decade of life, accompanied by elevated follicle-stimulating hormone levels and low estradiol levels and that has_material_basis_in heterozygous mutation in the BNC1 gene on chromosome 15q25. (DO)
Synonyms:exact_synonym: POF16;   genetic non-acquired premature ovarian failure;   premature ovarian failure 16
 primary_id: MIM:618723
 xref: EFO:0010646

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primary ovarian insufficiency 16 term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Amh anti-Mullerian hormone ISO ClinVar Annotator: match by term: Genetic non-acquired premature ovarian failure ClinVar NCBI chr 7:9,557,451...9,559,867
Ensembl chr 7:8,906,836...8,909,282 		JBrowse link
G Amhr2 anti-Mullerian hormone receptor type 2 ISO ClinVar Annotator: match by term: Genetic non-acquired premature ovarian failure ClinVar NCBI chr 7:135,454,517...135,470,183
Ensembl chr 7:133,579,393...133,588,258 		JBrowse link
G Ankrd31 ankyrin repeat domain 31 ISO ClinVar Annotator: match by term: Genetic non-acquired premature ovarian failure ClinVar PMID:25741868 NCBI chr 2:29,793,882...29,987,621
Ensembl chr 2:28,092,882...28,241,719 		JBrowse link
G Bmp15 bone morphogenetic protein 15 ISO ClinVar Annotator: match by term: Genetic non-acquired premature ovarian failure ClinVar NCBI chr  X:18,840,943...18,846,006
Ensembl chr  X:16,169,123...16,174,187 		JBrowse link
G Bmpr2 bone morphogenetic protein receptor type 2 ISO ClinVar Annotator: match by term: Genetic non-acquired premature ovarian failure ClinVar PMID:18356561 PMID:19555857 PMID:20002458 PMID:20534176 PMID:21737554 More... NCBI chr 9:68,685,942...68,801,353
Ensembl chr 9:61,190,566...61,301,809 		JBrowse link
G Bnc1 basonuclin zinc finger protein 1 ISO ClinVar Annotator: match by term: Premature ovarian failure 16 OMIM
ClinVar		 PMID:10909 PMID:25741868 NCBI chr 1:145,326,881...145,352,534
Ensembl chr 1:135,917,687...135,943,333 		JBrowse link
G Brca2 BRCA2, DNA repair associated ISO ClinVar Annotator: match by term: Genetic non-acquired premature ovarian failure ClinVar PMID:11802209 PMID:12601471 PMID:15131399 PMID:15290653 PMID:16683254 More... NCBI chr12:4,895,092...4,939,340
Ensembl chr12:59,819...100,567 		JBrowse link
G Brip1 BRCA1 interacting DNA helicase 1 ISO ClinVar Annotator: match by term: Genetic non-acquired premature ovarian failure ClinVar PMID:25741868 PMID:28492532 PMID:32091409 PMID:33471991 PMID:34326862 More... NCBI chr10:71,402,035...71,528,083
Ensembl chr10:70,907,371...71,030,324 		JBrowse link
G Ercc6 ERCC excision repair 6, chromatin remodeling factor ISO ClinVar Annotator: match by term: Genetic non-acquired premature ovarian failure ClinVar PMID:25741868 PMID:28492532 NCBI chr16:7,771,311...7,841,895
Ensembl chr16:7,765,013...7,835,587 		JBrowse link
G Figla folliculogenesis specific bHLH transcription factor ISO ClinVar Annotator: match by term: Genetic non-acquired premature ovarian failure ClinVar PMID:25741868 NCBI chr 4:119,989,983...119,994,217
Ensembl chr 4:118,432,765...118,436,690 		JBrowse link
G Foxl2 forkhead box L2 ISO ClinVar Annotator: match by term: Genetic non-acquired premature ovarian failure ClinVar PMID:24728327 NCBI chr 8:108,392,466...108,395,553
Ensembl chr 8:99,513,303...99,514,427 		JBrowse link
G Fshr follicle stimulating hormone receptor ISO ClinVar Annotator: match by term: Genetic non-acquired premature ovarian failure ClinVar NCBI chr 6:10,952,329...11,160,288
Ensembl chr 6:5,198,825...5,406,785 		JBrowse link
G Gdf9 growth differentiation factor 9 ISO ClinVar Annotator: match by term: Genetic non-acquired premature ovarian failure ClinVar PMID:25741868 NCBI chr10:38,090,021...38,100,801
Ensembl chr10:37,595,679...37,599,672 		JBrowse link
G Hfm1 helicase for meiosis 1 ISO ClinVar Annotator: match by term: Genetic non-acquired premature ovarian failure ClinVar NCBI chr14:3,002,103...3,108,567
Ensembl chr14:2,856,599...2,939,238 		JBrowse link
G Kash5 KASH domain containing 5 ISO ClinVar Annotator: match by term: Genetic non-acquired premature ovarian failure ClinVar PMID:25741868 PMID:35708642 NCBI chr 1:104,805,248...104,827,720
Ensembl chr 1:95,668,886...95,691,368 		JBrowse link
G Msh4 mutS homolog 4 ISO ClinVar Annotator: match by term: Genetic non-acquired premature ovarian failure ClinVar PMID:25741868 PMID:35090489 NCBI chr 2:245,445,118...245,504,493
Ensembl chr 2:242,792,661...242,843,487 		JBrowse link
G Msh5 mutS homolog 5 ISO ClinVar Annotator: match by term: Genetic non-acquired premature ovarian failure ClinVar PMID:25741868 NCBI chr20:3,779,180...3,797,996
Ensembl chr20:3,776,942...3,793,336 		JBrowse link
G Nobox NOBOX oogenesis homeobox ISO ClinVar Annotator: match by term: Genetic non-acquired premature ovarian failure ClinVar PMID:17701902 NCBI chr 4:73,128,926...73,134,431
Ensembl chr 4:72,128,931...72,134,436 		JBrowse link
G Nr5a1 nuclear receptor subfamily 5, group A, member 1 ISO ClinVar Annotator: match by term: Genetic non-acquired premature ovarian failure ClinVar PMID:22028768 PMID:22907560 PMID:25122490 PMID:25741868 PMID:27169744 More... NCBI chr 3:42,874,505...42,896,109
Ensembl chr 3:22,465,502...22,486,328 		JBrowse link
G Pgrmc1 progesterone receptor membrane component 1 ISO ClinVar Annotator: match by term: Genetic non-acquired premature ovarian failure ClinVar NCBI chr  X:120,698,610...120,706,805
Ensembl chr  X:115,832,884...115,888,682 		JBrowse link
G Polr2c RNA polymerase II subunit C ISO ClinVar Annotator: match by term: Genetic non-acquired premature ovarian failure ClinVar NCBI chr19:10,164,148...10,170,930
Ensembl chr19:10,157,823...10,164,945 		JBrowse link
G Prdm9 PR/SET domain 9 ISO ClinVar Annotator: match by term: Genetic non-acquired premature ovarian failure ClinVar PMID:25741868 NCBI chr 1:65,178,666...65,198,851
Ensembl chr 1:56,505,579...56,525,652 		JBrowse link
G Smc1b structural maintenance of chromosomes 1B ISO ClinVar Annotator: match by term: Genetic non-acquired premature ovarian failure ClinVar NCBI chr 7:118,060,898...118,122,683
Ensembl chr 7:116,180,987...116,242,744 		JBrowse link
G Sohlh1 spermatogenesis and oogenesis specific basic helix-loop-helix 1 ISO ClinVar Annotator: match by term: Genetic non-acquired premature ovarian failure ClinVar NCBI chr 3:29,061,267...29,065,588
Ensembl chr 3:8,663,318...8,667,388 		JBrowse link
G Spidr scaffold protein involved in DNA repair ISO ClinVar Annotator: match by term: Genetic non-acquired premature ovarian failure ClinVar NCBI chr11:98,270,779...98,511,760
Ensembl chr11:84,766,593...85,007,600 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  disease 19140
    Developmental Disease 14675
      Congenital, Hereditary, and Neonatal Diseases and Abnormalities 13724
        genetic disease 13391
          monogenic disease 10964
            autosomal genetic disease 10452
              autosomal dominant disease 6794
                primary ovarian insufficiency 16 25
Path 2
Term Annotations click to browse term
  disease 19140
    disease of anatomical entity 18453
      Urogenital Diseases 5402
        Female Urogenital Diseases and Pregnancy Complications 2678
          Female Urogenital Diseases 2194
            female reproductive system disease 2191
              Adnexal Diseases 1078
                ovarian disease 1069
                  Primary Ovarian Failure 176
                    primary ovarian insufficiency 162
                      primary ovarian insufficiency 16 25
paths to the root