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CHEBI ONTOLOGY - ANNOTATIONS

The Chemical Entities of Biological Interest (ChEBI) ontology is downloaded weekly from EMBL-EBI at http://www.ebi.ac.uk/chebi/. The data is made available under the Creative Commons License (CC BY 3.0, http://creativecommons.org/licenses/by/3.0/). For more information see: Degtyarenko et al. (2008) ChEBI: a database and ontology for chemical entities of biological interest. Nucleic Acids Res. 36, D344–D350.

Term:Xanthatin
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Accession:CHEBI:10058 term browser browse the term
Definition:A sesquiterpene lactone that has formula C15H18O3.
Synonyms:related_synonym: Formula=C15H18O3;   InChI=1S/C15H18O3/c1-9-8-14-13(11(3)15(17)18-14)7-6-12(9)5-4-10(2)16/h4-6,9,13-14H,3,7-8H2,1-2H3/b5-4+/t9-,13+,14-/m0/s1;   InChIKey=RBRPTFMVULVGIC-ZTIIIDENSA-N;   SMILES=C[C@H]1C[C@@H]2OC(=O)C(=C)[C@H]2CC=C1\\C=C\\C(C)=O
 xref: CAS:26791-73-1;   KEGG:C09601;   KNApSAcK:C00003394
 xref_mesh: MESH:C022186



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Xanthatin term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccnb1 cyclin B1 decreases expression ISO xanthatin results in decreased expression of CCNB1 mRNA CTD PMID:21568272 NCBI chr 2:31,912,190...31,921,163
Ensembl chr 2:31,912,193...31,921,172
JBrowse link
G Cdc25c cell division cycle 25C decreases expression
multiple interactions
ISO xanthatin results in decreased expression of CDC25C protein modified form
bafilomycin A1 inhibits the reaction [xanthatin results in decreased stability of CDC25C protein]; Go 6976 inhibits the reaction [xanthatin results in decreased stability of CDC25C protein]; leupeptin inhibits the reaction [xanthatin results in decreased stability of CDC25C protein]; TP53 protein promotes the reaction [xanthatin results in decreased expression of CDC25C protein modified form]; TP53 protein promotes the reaction [xanthatin results in decreased stability of CDC25C protein]; xanthatin results in increased ubiquitination of and results in decreased stability of CDC25C protein
CTD PMID:29074359 NCBI chr18:26,335,156...26,356,199
Ensembl chr18:26,335,834...26,356,185
JBrowse link
G Cdk1 cyclin-dependent kinase 1 decreases expression
multiple interactions
increases phosphorylation
ISO xanthatin results in decreased expression of CDK1 mRNA
Go 6976 inhibits the reaction [xanthatin results in increased phosphorylation of CDK1 protein]
CTD PMID:21568272 PMID:29074359 NCBI chr20:19,266,226...19,281,417
Ensembl chr20:19,266,248...19,281,408
JBrowse link
G Chek1 checkpoint kinase 1 multiple interactions
affects phosphorylation
ISO TP53 protein promotes the reaction [xanthatin results in decreased phosphorylation of CHEK1 protein]; xanthatin inhibits the reaction [Caffeine results in increased phosphorylation of CHEK1 protein]; xanthatin inhibits the reaction [Go 6976 results in increased phosphorylation of CHEK1 protein]
xanthatin affects the phosphorylation of CHEK1 protein
CTD PMID:29074359 NCBI chr 8:36,420,565...36,443,477
Ensembl chr 8:36,420,569...36,441,009
JBrowse link
G Fos Fos proto-oncogene, AP-1 transcription factor subunit multiple interactions
increases expression
ISO Acetylcysteine inhibits the reaction [xanthatin results in increased expression of FOS] CTD PMID:23824011 NCBI chr 6:105,121,170...105,124,036
Ensembl chr 6:105,121,170...105,124,036
JBrowse link
G Gadd45g growth arrest and DNA-damage-inducible, gamma multiple interactions
increases expression
ISO [xanthatin results in decreased expression of TOP2A] which results in increased expression of GADD45G mRNA; [xanthatin results in increased expression of GADD45G mRNA] which results in increased abundance of Reactive Oxygen Species; Acetylcysteine inhibits the reaction [[xanthatin results in increased expression of GADD45G mRNA] which results in increased abundance of Reactive Oxygen Species]; Acetylcysteine inhibits the reaction [xanthatin results in increased expression of GADD45G mRNA]; Acetylcysteine inhibits the reaction [xanthatin results in increased expression of GADD45G protein]
xanthatin results in increased expression of GADD45G mRNA; xanthatin results in increased expression of GADD45G protein
CTD PMID:21568272 PMID:23313378 PMID:23824011 NCBI chr17:13,376,842...13,378,587
Ensembl chr17:13,376,839...13,378,610
JBrowse link
G H2ax H2A.X variant histone increases expression ISO xanthatin results in increased expression of H2AX protein modified form CTD PMID:29074359 NCBI chr 8:44,671,907...44,673,262
Ensembl chr 8:44,671,786...44,673,239
JBrowse link
G Hmox1 heme oxygenase 1 increases expression ISO xanthatin results in increased expression of HMOX1 mRNA CTD PMID:21568272 NCBI chr19:13,466,287...13,474,082
Ensembl chr19:13,467,244...13,474,079
JBrowse link
G Il1b interleukin 1 beta increases expression ISO xanthatin results in increased expression of IL1B mRNA CTD PMID:21568272 NCBI chr 3:116,577,005...116,583,386
Ensembl chr 3:116,577,010...116,583,415
JBrowse link
G Lamp1 lysosomal-associated membrane protein 1 increases expression ISO xanthatin results in increased expression of LAMP1 protein CTD PMID:29074359 NCBI chr16:76,355,982...76,380,700
Ensembl chr16:76,355,984...76,381,883
JBrowse link
G Top2a DNA topoisomerase II alpha decreases activity
decreases expression
multiple interactions
ISO xanthatin results in decreased activity of TOP2A protein
xanthatin results in decreased expression of TOP2A
[xanthatin results in decreased expression of TOP2A] which results in increased expression of GADD45G mRNA
CTD PMID:23313378 PMID:23824011 NCBI chr10:83,945,731...83,976,874
Ensembl chr10:83,945,735...83,976,874
JBrowse link
G Tp53 tumor protein p53 increases response to substance
multiple interactions
ISO TP53 protein results in increased susceptibility to xanthatin
TP53 protein promotes the reaction [xanthatin results in decreased expression of CDC25C protein modified form]; TP53 protein promotes the reaction [xanthatin results in decreased phosphorylation of CHEK1 protein]; TP53 protein promotes the reaction [xanthatin results in decreased stability of CDC25C protein]
CTD PMID:29074359 NCBI chr10:54,300,070...54,311,525
Ensembl chr10:54,300,048...54,311,524
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  CHEBI ontology 19838
    chemical entity 19836
      atom 19836
        nonmetal atom 19774
          carbon atom 19731
            organic molecular entity 19731
              isoprenoid 14069
                terpenoid 13768
                  sesquiterpenoid 3271
                    sesquiterpene lactone 2029
                      Xanthatin 12
Path 2
Term Annotations click to browse term
  CHEBI ontology 19838
    subatomic particle 19836
      composite particle 19836
        hadron 19836
          baryon 19836
            nucleon 19836
              atomic nucleus 19836
                atom 19836
                  main group element atom 19786
                    p-block element atom 19786
                      carbon group element atom 19734
                        carbon atom 19731
                          organic molecular entity 19731
                            heteroorganic entity 19488
                              organochalcogen compound 19251
                                organooxygen compound 19168
                                  ester 17352
                                    carboxylic ester 16733
                                      lactone 13238
                                        terpene lactone 2175
                                          sesquiterpene lactone 2029
                                            Xanthatin 12
paths to the root