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ONTOLOGY REPORT - ANNOTATIONS

Term:RNA modification
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Accession:GO:0009451 term browser browse the term
Definition:The covalent alteration of one or more nucleotides within an RNA molecule to produce an RNA molecule with a sequence that differs from that coded genetically.
Comment:The term 'RNA editing' (GO:0016547) was merged into 'RNA modification' (GO:0009451) on the basis of statements in the preface of Modification and Editing of RNA (ISBN:1555811337) that there is no clear distinction between modification and editing.
Synonyms:narrow_synonym: RNA editing
 alt_id: GO:0016547
 xref: Wikipedia:RNA_editing


show annotations for term's descendants           Sort by:
7-methylguanosine cap hypermethylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tgs1 trimethylguanosine synthase 1 involved_in ISO
IBA		 (PMID:16687569)
GO_REF:0000033		 RGD
GO_Central		 PMID:16687569 GO_REF:0000033 NCBI chr 5:16,524,864...16,558,399
Ensembl chr 5:16,524,874...16,558,399 		JBrowse link
adenosine to inosine editing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adad1 adenosine deaminase domain containing 1 involved_in IEA
IBA		 GO_REF:0000118
GO_REF:0000033		 TreeGrafter
GO_Central		 GO_REF:0000033 GO_REF:0000118 NCBI chr 2:119,948,809...120,005,920
Ensembl chr 2:119,948,926...120,005,913 		JBrowse link
G Adad2 adenosine deaminase domain containing 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr19:47,665,288...47,669,433
Ensembl chr19:47,665,309...47,669,436 		JBrowse link
G Adar adenosine deaminase, RNA-specific involved_in
acts_upstream_of_or_within		 ISO
IEA
IBA
ISS		 (PMID:15858013), (PMID:16475990), (PMID:19651874), (PMID:21289159)
MGI:3029789 (PMID:14615479)
GO_REF:0000118
GO_REF:0000033
GO_REF:0000107
(MGI:5447614|PMID:17369310)
GO_REF:0000024		 RGD
TreeGrafter
GO_Central
Ensembl
UniProt		 PMID:14615479 PMID:15858013 PMID:16475990 PMID:17369310 PMID:19651874 More... GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 MGI:5447614 NCBI chr 2:175,138,391...175,178,280
Ensembl chr 2:175,138,403...175,178,282 		JBrowse link
G Adarb1 adenosine deaminase, RNA-specific, B1 acts_upstream_of_or_within
involved_in		 IDA
ISO
IEA
IBA
ISS		 MGI:4840554 (PMID:20826656)
GO_REF:0000118
GO_REF:0000033
GO_REF:0000107
(MGI:5447614|PMID:17369310)
(PMID:18178553), (PMID:21289159), (PMID:32220291)
GO_REF:0000024		 RGD
TreeGrafter
GO_Central
Ensembl
UniProt		 PMID:17369310 PMID:18178553 PMID:20826656 PMID:21289159 PMID:32220291 More... GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 MGI:5447614, RGD:631737 NCBI chr20:11,222,569...11,350,854
Ensembl chr20:11,222,583...11,350,852 		JBrowse link
G Adarb2 adenosine deaminase RNA specific B2 involved_in IBA
IEA		 GO_REF:0000033
GO_REF:0000118		 GO_Central
TreeGrafter		 GO_REF:0000033 GO_REF:0000118 NCBI chr17:61,750,437...62,300,984
Ensembl chr17:61,756,067...62,300,831 		JBrowse link
G Mettl3 methyltransferase 3, N6-adenosine-methyltransferase complex catalytic subunit involved_in ISO (MGI:5621227|PMID:25569111) RGD PMID:25569111 MGI:5621227 NCBI chr15:25,002,505...25,014,097
Ensembl chr15:25,003,172...25,014,041 		JBrowse link
base conversion or substitution editing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adar adenosine deaminase, RNA-specific acts_upstream_of_or_within ISO (PMID:9020165) RGD PMID:9020165 NCBI chr 2:175,138,391...175,178,280
Ensembl chr 2:175,138,403...175,178,282 		JBrowse link
G Adarb1 adenosine deaminase, RNA-specific, B1 involved_in IDA
ISO		 (PMID:32220291) RGD PMID:32220291 PMID:10836790 RGD:10450892 NCBI chr20:11,222,569...11,350,854
Ensembl chr20:11,222,583...11,350,852 		JBrowse link
conversion of methionyl-tRNA to N-formyl-methionyl-tRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mtfmt mitochondrial methionyl-tRNA formyltransferase involved_in ISO
IBA
IEA
ISS		 (PMID:25288793)
GO_REF:0000033
GO_REF:0000107
GO_REF:0000024		 RGD
GO_Central
Ensembl
UniProt		 PMID:25288793 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 8:65,953,787...65,971,841
Ensembl chr 8:65,953,767...65,971,841 		JBrowse link
conversion of seryl-tRNAsec to selenocys-tRNAsec term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sepsecs Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr14:58,311,484...58,341,745
Ensembl chr14:58,311,499...58,341,740 		JBrowse link
cytidine to uridine editing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G A1cf APOBEC1 complementation factor acts_upstream_of_or_within
involved_in		 IMP
ISO
IEA
TAS		 MGI:103298 (PMID:24916387)
(MGI:6331191|PMID:30309881), (MGI:7387172|PMID:30844405)
(PMID:24916387), (PMID:30844405)
GO_REF:0000107
PMID:12896982		 RGD
Ensembl		 PMID:24916387 PMID:30309881 PMID:30844405 PMID:10669759 PMID:12896982 GO_REF:0000107 MGI:6331191 MGI:7387172, RGD:9587747, RGD:8553404 NCBI chr 1:229,736,037...229,823,499
Ensembl chr 1:229,736,106...229,824,354 		JBrowse link
G Aicda activation-induced cytidine deaminase involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:155,774,132...155,783,972
Ensembl chr 4:155,774,132...155,783,972 		JBrowse link
G Apobec1 apolipoprotein B mRNA editing enzyme catalytic subunit 1 acts_upstream_of_or_within
involved_in		 IDA
ISO
IEA
IBA		 MGI:1917115|MGI:2157378|MGI:2384294 (PMID:24916387), (PMID:8692961)
GO_REF:0000118
GO_REF:0000033
GO_REF:0000107
(MGI:7387172|PMID:30844405)
(PMID:24916387), (PMID:30844405)		 RGD
TreeGrafter
GO_Central
Ensembl		 PMID:8692961 PMID:24916387 PMID:30844405 PMID:12020819 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 MGI:7387172, RGD:625559 NCBI chr 4:155,800,030...155,828,515
Ensembl chr 4:155,800,887...155,827,390 		JBrowse link
G Apobec2 apolipoprotein B mRNA editing enzyme catalytic subunit 2 acts_upstream_of_or_within
involved_in		 ISO
IBA		 (PMID:10403781)
GO_REF:0000033		 RGD
GO_Central		 PMID:10403781 GO_REF:0000033 NCBI chr 9:12,564,955...12,578,461
Ensembl chr 9:12,564,920...12,578,458 		JBrowse link
G Apobec3 apolipoprotein B mRNA editing enzyme catalytic subunit 3 involved_in IEA
IBA		 GO_REF:0000118
GO_REF:0000033		 TreeGrafter
GO_Central		 GO_REF:0000033 GO_REF:0000118 NCBI chr 7:111,433,789...111,453,032
Ensembl chr 7:111,433,764...111,452,922 		JBrowse link
G Rbm47 RNA binding motif protein 47 involved_in
acts_upstream_of_or_within		 ISO (PMID:24916387), (PMID:30844405)
MGI:103298 (PMID:24916387)
(MGI:6331191|PMID:30309881), (MGI:7387172|PMID:30844405)		 RGD PMID:24916387 PMID:30309881 PMID:30844405 MGI:6331191 MGI:7387172 NCBI chr14:42,053,290...42,191,572
Ensembl chr14:42,154,142...42,189,431 		JBrowse link
enzyme-directed rRNA pseudouridine synthesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dkc1 dyskerin pseudouridine synthase 1 involved_in ISS
ISO		 GO_REF:0000024
(PMID:25219674)		 UniProt
RGD		 PMID:25219674 GO_REF:0000024
G Rpusd1 RNA pseudouridine synthase domain containing 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:14,751,310...14,755,213
Ensembl chr10:14,751,384...14,755,207 		JBrowse link
G Rpusd2 RNA pseudouridine synthase domain containing 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:106,017,759...106,023,010
Ensembl chr 3:106,017,864...106,023,251 		JBrowse link
G Rpusd3 RNA pseudouridine synthase D3 involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 NCBI chr 4:146,553,743...146,562,789
Ensembl chr 4:146,558,562...146,562,794 		JBrowse link
G Rpusd4 RNA pseudouridine synthase D4 involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 NCBI chr 8:33,617,384...33,626,873
Ensembl chr 8:33,617,379...33,626,873 		JBrowse link
G Tsr3 TSR3 ribosome maturation factor involved_in ISO (PMID:27084949) RGD PMID:27084949 NCBI chr10:14,257,161...14,259,562
Ensembl chr10:14,257,171...14,259,561 		JBrowse link
mitochondrial mRNA modification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nol8 nucleolar protein 8 involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 NCBI chr17:14,990,394...15,013,784
Ensembl chr17:14,990,417...15,013,848 		JBrowse link
mitochondrial tRNA methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hsd17b10 hydroxysteroid (17-beta) dehydrogenase 10 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:23042678), (PMID:25925575), (PMID:28888424)		 UniProt
Ensembl
RGD		 PMID:23042678 PMID:25925575 PMID:28888424 GO_REF:0000024 GO_REF:0000107 NCBI chr  X:21,089,142...21,091,603
Ensembl chr  X:21,089,122...21,109,488 		JBrowse link
G Trmt10c tRNA methyltransferase 10C, mitochondrial RNase P subunit involved_in ISO (PMID:23042678) RGD PMID:23042678 NCBI chr11:44,584,388...44,589,466
Ensembl chr11:44,584,113...44,589,568 		JBrowse link
G Trmt5 tRNA methyltransferase 5 involved_in ISO
IBA		 (PMID:26189817)
GO_REF:0000033		 RGD
GO_Central		 PMID:26189817 GO_REF:0000033 NCBI chr 6:91,963,558...91,987,660
Ensembl chr 6:91,943,724...91,987,555 		JBrowse link
mitochondrial tRNA modification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdk5rap1 CDK5 regulatory subunit associated protein 1 acts_upstream_of_or_within ISO MGI:5750452 (PMID:25738458) RGD PMID:25738458 NCBI chr 3:142,838,081...142,872,669
Ensembl chr 3:142,708,028...142,872,677 		JBrowse link
G Mettl8 methyltransferase 8, tRNA N3-cytidine involved_in ISO (PMID:34774131) RGD PMID:34774131 NCBI chr 3:55,731,453...55,863,652
Ensembl chr 3:55,770,167...55,863,676 		JBrowse link
G Trit1 tRNA isopentenyltransferase 1 involved_in ISO (PMID:34774131)
(PMID:24901367)		 RGD PMID:24901367 PMID:34774131 NCBI chr 5:135,293,472...135,341,522
Ensembl chr 5:135,295,330...135,338,764 		JBrowse link
mitochondrial tRNA pseudouridine synthesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rpusd4 RNA pseudouridine synthase D4 involved_in ISO (PMID:28082677) RGD PMID:28082677 NCBI chr 8:33,617,384...33,626,873
Ensembl chr 8:33,617,379...33,626,873 		JBrowse link
mitochondrial tRNA threonylcarbamoyladenosine modification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Osgepl1 O-sialoglycoprotein endopeptidase-like 1 involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 NCBI chr 9:48,214,995...48,229,440
Ensembl chr 9:48,215,402...48,229,388 		JBrowse link
mitochondrial tRNA wobble uridine modification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mto1 mitochondrial tRNA translation optimization 1 involved_in
acts_upstream_of_or_within		 IBA
ISO		 GO_REF:0000033
SGD:S000003205 (PMID:14522080)		 GO_Central
RGD		 PMID:14522080 GO_REF:0000033 NCBI chr 8:79,309,681...79,335,231
Ensembl chr 8:79,309,982...79,335,231 		JBrowse link
mRNA modification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G A1cf APOBEC1 complementation factor involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:104663 (PMID:20541607)
(PMID:11134005)		 Ensembl
RGD		 PMID:11134005 PMID:20541607 GO_REF:0000107 NCBI chr 1:229,736,037...229,823,499
Ensembl chr 1:229,736,106...229,824,354 		JBrowse link
G Adarb1 adenosine deaminase, RNA-specific, B1 IDA RGD PMID:14660658 RGD:1358272 NCBI chr20:11,222,569...11,350,854
Ensembl chr20:11,222,583...11,350,852 		JBrowse link
G Apobec1 apolipoprotein B mRNA editing enzyme catalytic subunit 1 acts_upstream_of_or_within
involved_in		 IDA
ISO
IEA		 MGI:2157186|MGI:2157378|MGI:3664540 (PMID:10403781), (PMID:8626621), (PMID:8692961), (PMID:9240444)
GO_REF:0000107
(PMID:11134005)		 RGD
Ensembl		 PMID:8626621 PMID:8692961 PMID:9240444 PMID:10403781 PMID:11134005 More... GO_REF:0000107, RGD:634661 NCBI chr 4:155,800,030...155,828,515
Ensembl chr 4:155,800,887...155,827,390 		JBrowse link
G Apobec2 apolipoprotein B mRNA editing enzyme catalytic subunit 2 acts_upstream_of_or_within ISO MGI:2157186 (PMID:8626621) RGD PMID:8626621 NCBI chr 9:12,564,955...12,578,461
Ensembl chr 9:12,564,920...12,578,458 		JBrowse link
G Dnajb11 DnaJ heat shock protein family (Hsp40) member B11 acts_upstream_of_or_within ISO (PMID:11584023) RGD PMID:11584023 NCBI chr11:78,151,750...78,168,259
Ensembl chr11:78,150,429...78,180,407 		JBrowse link
G Hnrnpab heterogeneous nuclear ribonucleoprotein A/B involved_in ISO (PMID:11134005) RGD PMID:11134005 NCBI chr10:35,857,040...35,862,935
Ensembl chr10:35,857,041...35,863,344 		JBrowse link
G Mettl14 methyltransferase 14, N6-adenosine-methyltransferase non-catalytic subunit involved_in ISO
IBA		 (PMID:31340148)
GO_REF:0000033
(PMID:27281194), (PMID:27373337), (PMID:27627798)		 RGD
GO_Central		 PMID:27281194 PMID:27373337 PMID:27627798 PMID:31340148 GO_REF:0000033 NCBI chr 2:211,530,598...211,546,845
Ensembl chr 2:211,530,602...211,546,821 		JBrowse link
G Mettl3 methyltransferase 3, N6-adenosine-methyltransferase complex catalytic subunit involved_in ISO
IBA		 (PMID:24394384)
GO_REF:0000033
(PMID:27373337), (PMID:27627798)		 RGD
GO_Central		 PMID:24394384 PMID:27373337 PMID:27627798 GO_REF:0000033 NCBI chr15:25,002,505...25,014,097
Ensembl chr15:25,003,172...25,014,041 		JBrowse link
G Mettl4 methyltransferase 4, N6-adenosine involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 9:111,440,976...111,523,871
Ensembl chr 9:111,441,027...111,464,749 		JBrowse link
G Syncrip synaptotagmin binding, cytoplasmic RNA interacting protein involved_in ISO (PMID:11134005) RGD PMID:11134005 NCBI chr 8:89,402,487...89,435,517
Ensembl chr 8:89,402,866...89,435,515 		JBrowse link
G Virma vir like m6A methyltransferase associated involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:24,961,208...25,024,660
Ensembl chr 5:24,960,778...25,023,341 		JBrowse link
G Wtap WT1 associated protein involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:47,665,965...47,691,067
Ensembl chr 1:47,665,965...47,691,065 		JBrowse link
mRNA pseudouridine synthesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dkc1 dyskerin pseudouridine synthase 1 involved_in IEA
IBA		 GO_REF:0000118
GO_REF:0000033		 TreeGrafter
GO_Central		 GO_REF:0000033 GO_REF:0000118
G Pus1 pseudouridine synthase 1 involved_in ISO
IEA
IBA		 (PMID:31477916), (PMID:35051350)
GO_REF:0000118
GO_REF:0000033		 RGD
TreeGrafter
GO_Central		 PMID:31477916 PMID:35051350 GO_REF:0000033 GO_REF:0000118 NCBI chr12:45,880,364...45,889,196
Ensembl chr12:45,880,440...45,889,196 		JBrowse link
G Pus3 pseudouridine synthase 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:33,910,461...33,918,716
Ensembl chr 8:33,911,357...33,918,714 		JBrowse link
G Pus7 pseudouridine synthase 7 involved_in ISO (PMID:28073919), (PMID:31477916), (PMID:35051350) RGD PMID:28073919 PMID:31477916 PMID:35051350 NCBI chr 4:11,360,169...11,401,139
Ensembl chr 4:11,360,188...11,401,172 		JBrowse link
G Pus7l pseudouridine synthase 7 like involved_in ISO (PMID:35051350) RGD PMID:35051350 NCBI chr 7:125,659,507...125,706,582
Ensembl chr 7:125,659,507...125,682,333 		JBrowse link
G Rpusd2 RNA pseudouridine synthase domain containing 2 involved_in ISO (PMID:31477916), (PMID:35051350) RGD PMID:31477916 PMID:35051350 NCBI chr 3:106,017,759...106,023,010
Ensembl chr 3:106,017,864...106,023,251 		JBrowse link
G Rpusd4 RNA pseudouridine synthase D4 involved_in ISO (PMID:35051350) RGD PMID:35051350 NCBI chr 8:33,617,384...33,626,873
Ensembl chr 8:33,617,379...33,626,873 		JBrowse link
G Trub1 TruB pseudouridine synthase family member 1 involved_in ISS
IBA
ISO		 GO_REF:0000024
GO_REF:0000033
(PMID:28073919), (PMID:31477916)		 UniProt
GO_Central
RGD		 PMID:28073919 PMID:31477916 GO_REF:0000024 GO_REF:0000033 NCBI chr 1:256,513,418...256,554,549
Ensembl chr 1:256,515,562...256,552,814 		JBrowse link
G Trub2 TruB pseudouridine synthase family member 2 involved_in ISO (PMID:31477916) RGD PMID:31477916 NCBI chr 3:13,049,220...13,059,836
Ensembl chr 3:13,033,745...13,059,930 		JBrowse link
negative regulation of mRNA modification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bag4 BAG cochaperone 4 IMP RGD PMID:14559896 RGD:2325853 NCBI chr16:66,288,678...66,305,893
Ensembl chr16:66,288,678...66,308,663 		JBrowse link
G Hnrnpc heterogeneous nuclear ribonucleoprotein C IDA RGD PMID:9792439 RGD:10041038 NCBI chr15:24,779,593...24,809,213
Ensembl chr15:24,779,450...24,809,183 		JBrowse link
G Syncrip synaptotagmin binding, cytoplasmic RNA interacting protein IMP RGD PMID:11134005 RGD:10059415 NCBI chr 8:89,402,487...89,435,517
Ensembl chr 8:89,402,866...89,435,515 		JBrowse link
oxidative RNA demethylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alkbh1 alkB homolog 1, histone H2A dioxygenase involved_in ISO
IBA		 (PMID:31188562)
GO_REF:0000033		 RGD
GO_Central		 PMID:31188562 GO_REF:0000033 NCBI chr 6:107,068,301...107,088,784
Ensembl chr 6:107,068,475...107,088,759 		JBrowse link
G Jmjd6 jumonji domain containing 6, arginine demethylase and lysine hydroxylase involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:24360279)		 UniProt
Ensembl
RGD		 PMID:24360279 GO_REF:0000024 GO_REF:0000107 NCBI chr10:102,041,131...102,047,182
Ensembl chr10:102,041,120...102,047,182 		JBrowse link
positive regulation of mRNA modification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apobec1 apolipoprotein B mRNA editing enzyme catalytic subunit 1 IDA RGD PMID:9792439 RGD:10041038 NCBI chr 4:155,800,030...155,828,515
Ensembl chr 4:155,800,887...155,827,390 		JBrowse link
pseudouridine synthesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dkc1 dyskerin pseudouridine synthase 1 involved_in IEA GO_REF:0000117 UniProt GO_REF:0000117
G ENSRNOG00000063617 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr11:32,965,895...32,966,859 JBrowse link
G ENSRNOG00000067486 involved_in IEA GO_REF:0000117 UniProt GO_REF:0000117 Ensembl chr11:32,871,924...32,873,079 JBrowse link
G ENSRNOG00000067558 involved_in IEA GO_REF:0000117 UniProt GO_REF:0000117 Ensembl chr11:32,888,005...32,889,160 JBrowse link
G Gar1 GAR1 ribonucleoprotein involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 2:218,375,231...218,382,509
Ensembl chr 2:218,375,353...218,382,524 		JBrowse link
G Naf1 nuclear assembly factor 1 ribonucleoprotein involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr16:22,837,583...22,868,320
Ensembl chr16:22,837,588...22,868,293 		JBrowse link
G Nop10l1 NOP10 ribonucleoprotein like 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:68,656,172...68,656,369
Ensembl chr 3:68,656,172...68,656,363 		JBrowse link
G Pus7 pseudouridine synthase 7 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:11,360,169...11,401,139
Ensembl chr 4:11,360,188...11,401,172 		JBrowse link
G Pus7l pseudouridine synthase 7 like involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:125,659,507...125,706,582
Ensembl chr 7:125,659,507...125,682,333 		JBrowse link
G Rpusd3 RNA pseudouridine synthase D3 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 4:146,553,743...146,562,789
Ensembl chr 4:146,558,562...146,562,794 		JBrowse link
G Rpusd4 RNA pseudouridine synthase D4 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 8:33,617,384...33,626,873
Ensembl chr 8:33,617,379...33,626,873 		JBrowse link
G Trub2 TruB pseudouridine synthase family member 2 involved_in IEA GO_REF:0000117 UniProt GO_REF:0000117 NCBI chr 3:13,049,220...13,059,836
Ensembl chr 3:13,033,745...13,059,930 		JBrowse link
G Trub2-ps3 TruB pseudouridine synthase family member 2, pseudogene 3 involved_in IEA GO_REF:0000117 UniProt GO_REF:0000117 NCBI chr11:32,887,974...32,889,228 JBrowse link
G Trub2-ps6 TruB pseudouridine synthase family member 2, pseudogene 6 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr11:32,965,895...32,966,834 JBrowse link
regulation of translational initiation by tRNA modification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alkbh1 alkB homolog 1, histone H2A dioxygenase involved_in ISO (PMID:27745969)
(MGI:6316585|PMID:27745969)		 RGD PMID:27745969 MGI:6316585 NCBI chr 6:107,068,301...107,088,784
Ensembl chr 6:107,068,475...107,088,759 		JBrowse link
regulation of tRNA methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akt1 AKT serine/threonine kinase 1 involved_in ISO
IEA		 (PMID:15861136)
GO_REF:0000107		 RGD
Ensembl		 PMID:15861136 GO_REF:0000107 NCBI chr 6:131,713,716...131,735,319
Ensembl chr 6:131,713,720...131,733,921 		JBrowse link
RNA (guanine-N7)-methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mettl1 methyltransferase 1, tRNA methylguanosine involved_in ISO
IBA		 (PMID:37379838)
GO_REF:0000033		 RGD
GO_Central		 PMID:37379838 GO_REF:0000033 NCBI chr 7:62,864,860...62,869,202
Ensembl chr 7:62,864,853...62,869,202 		JBrowse link
RNA 5'-cap (guanine-N7)-methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ramac RNA guanine-7 methyltransferase activating subunit involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 1:135,708,529...135,714,417
Ensembl chr 1:135,708,535...135,722,151 		JBrowse link
G Rnmt RNA (guanine-7-) methyltransferase involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr18:61,886,230...61,909,775
Ensembl chr18:61,886,292...61,909,775 		JBrowse link
RNA methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07012856.1 involved_in IEA GO_REF:0000117 UniProt GO_REF:0000117
G Bcdin3d BCDIN3 domain containing RNA methyltransferase involved_in ISO (PMID:33664453) RGD PMID:33664453 NCBI chr 7:130,605,540...130,610,134
Ensembl chr 7:130,605,541...130,610,115 		JBrowse link
G Ftsj3 FtsJ RNA 2'-O-methyltransferase 3 involved_in ISO
ISS		 (PMID:30626973)
GO_REF:0000024		 RGD
UniProt		 PMID:30626973 GO_REF:0000024 NCBI chr10:91,180,945...91,187,389
Ensembl chr10:91,180,696...91,187,397 		JBrowse link
G Henmt1 HEN methyltransferase 1 involved_in ISO
IEA
ISS		 (PMID:11283698)
GO_REF:0000117
(MGI:4947214|PMID:17652135)
GO_REF:0000024		 RGD
UniProt		 PMID:11283698 PMID:17652135 GO_REF:0000024 GO_REF:0000117 MGI:4947214 NCBI chr 2:196,585,732...196,603,700
Ensembl chr 2:196,586,797...196,599,738 		JBrowse link
G Mepce methylphosphate capping enzyme involved_in ISO (PMID:17643375), (PMID:19906723), (PMID:24360279), (PMID:28431135), (PMID:30559425) RGD PMID:17643375 PMID:19906723 PMID:24360279 PMID:28431135 PMID:30559425 NCBI chr12:18,911,796...18,916,515
Ensembl chr12:18,911,796...18,916,514 		JBrowse link
G Mettl14 methyltransferase 14, N6-adenosine-methyltransferase non-catalytic subunit involved_in ISO (MGI:6103038|PMID:28914256) RGD PMID:28914256 MGI:6103038 NCBI chr 2:211,530,598...211,546,845
Ensembl chr 2:211,530,602...211,546,821 		JBrowse link
G Mettl16 methyltransferase 16, RNA N6-adenosine involved_in ISO (MGI:6114846|PMID:29262316) RGD PMID:29262316 MGI:6114846 NCBI chr10:59,640,915...59,697,291
Ensembl chr10:59,640,972...59,687,061 		JBrowse link
G Mettl3 methyltransferase 3, N6-adenosine-methyltransferase complex catalytic subunit involved_in ISO (PMID:9409616)
(MGI:6095345|PMID:28637692), (MGI:6103038|PMID:28914256), (MGI:6103202|PMID:28809392)		 RGD PMID:9409616 PMID:28637692 PMID:28809392 PMID:28914256 MGI:6095345 MGI:6103038 MGI:6103202 NCBI chr15:25,002,505...25,014,097
Ensembl chr15:25,003,172...25,014,041 		JBrowse link
G Mrm2 mitochondrial rRNA methyltransferase 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr12:14,309,556...14,314,759
Ensembl chr12:14,251,941...14,314,118 		JBrowse link
G Nsun6 NOP2/Sun RNA methyltransferase 6 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr17:77,912,374...77,955,694
Ensembl chr17:77,912,377...77,950,006 		JBrowse link
G Rbm15 RNA binding motif protein 15 involved_in ISO (PMID:27602518) RGD PMID:27602518 NCBI chr 2:194,945,974...194,954,498
Ensembl chr 2:194,945,974...194,954,703 		JBrowse link
G Rbm15b RNA binding motif protein 15B involved_in ISO (PMID:27602518) RGD PMID:27602518 NCBI chr 8:107,543,613...107,546,678
Ensembl chr 8:107,525,898...107,551,696 		JBrowse link
G Trmt11 tRNA methyltransferase 11 homolog involved_in IEA GO_REF:0000117 UniProt GO_REF:0000117 NCBI chr 1:27,054,437...27,109,765
Ensembl chr 1:27,054,420...27,201,610 		JBrowse link
rRNA (guanine-N7)-methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bud23 BUD23, rRNA methyltransferase and ribosome maturation factor involved_in ISO
IBA		 (PMID:25851604)
GO_REF:0000033		 RGD
GO_Central		 PMID:25851604 GO_REF:0000033 NCBI chr12:21,629,551...21,640,758
Ensembl chr12:21,629,536...21,640,751 		JBrowse link
G ENSRNOG00000064902 involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 Ensembl chr  X:10,442,877...10,443,894 JBrowse link
G ENSRNOG00000065471 involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 Ensembl chr18:1,658,333...1,658,748 JBrowse link
G Trmt112 tRNA methyltransferase activator subunit 11-2 involved_in ISO (PMID:25851604) RGD PMID:25851604 NCBI chr 1:204,103,298...204,104,151 JBrowse link
rRNA 2'-O-methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mrm1 mitochondrial rRNA methyltransferase 1 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr10:69,690,406...69,697,326
Ensembl chr10:69,690,421...69,696,709 		JBrowse link
G Mrm3 mitochondrial rRNA methyltransferase 3 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr10:61,095,920...61,125,421
Ensembl chr10:61,095,952...61,102,630 		JBrowse link
rRNA acetylation involved in maturation of SSU-rRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nat10 N-acetyltransferase 10 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:90,111,643...90,149,891
Ensembl chr 3:90,111,645...90,149,927 		JBrowse link
rRNA base methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Emg1 EMG1 N1-specific pseudouridine methyltransferase involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:157,509,258...157,517,540
Ensembl chr 4:157,509,277...157,517,540 		JBrowse link
G Fdxacb1 ferredoxin-fold anticodon binding domain containing 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:51,111,831...51,118,253
Ensembl chr 8:51,113,397...51,118,308 		JBrowse link
G Mettl15 methyltransferase 15, mitochondrial 12S rRNA N4-cytidine involved_in ISO
IBA		 (PMID:31665743), (PMID:32371392)
GO_REF:0000033		 RGD
GO_Central		 PMID:31665743 PMID:32371392 GO_REF:0000033 NCBI chr 3:95,586,855...95,764,392
Ensembl chr 3:95,586,850...95,764,397 		JBrowse link
G Mettl16 methyltransferase 16, RNA N6-adenosine involved_in IEA
IBA		 GO_REF:0000118
GO_REF:0000033		 TreeGrafter
GO_Central		 GO_REF:0000033 GO_REF:0000118 NCBI chr10:59,640,915...59,697,291
Ensembl chr10:59,640,972...59,687,061 		JBrowse link
G Nop2 NOP2 nucleolar protein involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:157,932,731...157,944,462
Ensembl chr 4:157,932,716...157,944,459 		JBrowse link
G Nsun5 NOP2/Sun RNA methyltransferase 5 involved_in ISO
IBA		 (PMID:31428936), (PMID:31722427)
GO_REF:0000033
(MGI:6414744|PMID:31722427)		 RGD
GO_Central		 PMID:31428936 PMID:31722427 GO_REF:0000033 MGI:6414744 NCBI chr12:21,293,637...21,299,319
Ensembl chr12:21,293,645...21,299,272 		JBrowse link
rRNA methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dimt1 DIM1 rRNA methyltransferase and ribosome maturation factor involved_in ISO
IBA		 (PMID:25851604)
GO_REF:0000033		 RGD
GO_Central		 PMID:25851604 GO_REF:0000033 NCBI chr 2:38,343,086...38,368,242
Ensembl chr 2:38,354,854...38,368,227 		JBrowse link
G Fbl fibrillarin involved_in ISO
IEA
IBA
ISS		 (PMID:30540930)
GO_REF:0000107
GO_REF:0000033
GO_REF:0000024		 RGD
Ensembl
GO_Central
UniProt		 PMID:30540930 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 1:83,469,832...83,478,932
Ensembl chr 1:83,469,832...83,478,932 		JBrowse link
G Fbll1 fibrillarin-like 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:20,258,656...20,260,299
Ensembl chr10:20,258,656...20,260,299 		JBrowse link
G Ftsj3 FtsJ RNA 2'-O-methyltransferase 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:91,180,945...91,187,389
Ensembl chr10:91,180,696...91,187,397 		JBrowse link
G Mettl5 methyltransferase 5, N6-adenosine involved_in ISO
IBA		 (MGI:6505165|PMID:32783360), (MGI:6884948|PMID:35033535)
(PMID:31328227), (PMID:32217665), (PMID:33357433), (PMID:35033535)
GO_REF:0000033		 RGD
GO_Central		 PMID:31328227 PMID:32217665 PMID:32783360 PMID:33357433 PMID:35033535 GO_REF:0000033 MGI:6505165 MGI:6884948 NCBI chr 3:54,625,790...54,638,066
Ensembl chr 3:54,625,793...54,638,039 		JBrowse link
G Mrm2 mitochondrial rRNA methyltransferase 2 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr12:14,309,556...14,314,759
Ensembl chr12:14,251,941...14,314,118 		JBrowse link
G Nsun3 NOP2/Sun RNA methyltransferase 3 involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 NCBI chr11:37,490,832...37,575,607
Ensembl chr11:37,490,838...37,568,543 		JBrowse link
G Nsun4 NOP2/Sun RNA methyltransferase 4 involved_in ISO
IBA		 (PMID:23022348)
GO_REF:0000033
(MGI:5573024|PMID:24516400)		 RGD
GO_Central		 PMID:23022348 PMID:24516400 GO_REF:0000033 MGI:5573024 NCBI chr 5:129,511,224...129,532,498
Ensembl chr 5:129,512,307...129,532,423
Ensembl chr 5:129,512,307...129,532,423 		JBrowse link
G Tfb1m transcription factor B1, mitochondrial involved_in IEA
ISS
IBA
ISO		 GO_REF:0000104
GO_REF:0000024
GO_REF:0000033
(PMID:31251801)
(MGI:3843703|PMID:19356719)		 UniProt
GO_Central
RGD		 PMID:19356719 PMID:31251801 GO_REF:0000024 GO_REF:0000033 GO_REF:0000104 MGI:3843703 NCBI chr 1:44,115,240...44,161,737
Ensembl chr 1:44,119,166...44,161,709 		JBrowse link
G Tfb2m transcription factor B2, mitochondrial involved_in IEA
IBA		 GO_REF:0000104
GO_REF:0000033		 UniProt
GO_Central		 GO_REF:0000033 GO_REF:0000104 NCBI chr13:91,278,889...91,296,709
Ensembl chr13:91,278,898...91,296,657 		JBrowse link
G Trmt112 tRNA methyltransferase activator subunit 11-2 involved_in ISO (PMID:31328227), (PMID:35033535) RGD PMID:31328227 PMID:35033535 NCBI chr 1:204,103,298...204,104,151 JBrowse link
G Zcchc4 zinc finger CCHC-type containing 4 involved_in IEA
IBA
ISS
ISO		 GO_REF:0000002
GO_REF:0000033
GO_REF:0000107
GO_REF:0000024
(PMID:30531910), (PMID:31328227), (PMID:31695039), (PMID:31799605)		 InterPro
GO_Central
Ensembl
UniProt
RGD		 PMID:30531910 PMID:31328227 PMID:31695039 PMID:31799605 GO_REF:0000002 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr14:58,165,467...58,207,071
Ensembl chr14:58,165,460...58,206,743 		JBrowse link
rRNA modification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mrm1 mitochondrial rRNA methyltransferase 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:69,690,406...69,697,326
Ensembl chr10:69,690,421...69,696,709 		JBrowse link
rRNA pseudouridine synthesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dkc1 dyskerin pseudouridine synthase 1 involved_in
acts_upstream_of_or_within		 IBA
ISO
IEA		 GO_REF:0000033
MGI:2446500|MGI:3849598|MGI:3849599 (PMID:15240872), (PMID:23726835)
GO_REF:0000118		 GO_Central
RGD
TreeGrafter		 PMID:15240872 PMID:23726835 GO_REF:0000033 GO_REF:0000118
G Nhp2 NHP2 ribonucleoprotein involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:35,877,057...35,880,399
Ensembl chr10:35,877,054...35,882,545 		JBrowse link
G Nop10 NOP10 ribonucleoprotein involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:99,066,857...99,067,942
Ensembl chr 3:99,066,857...99,067,942 		JBrowse link
G Nop10l1 NOP10 ribonucleoprotein like 1 involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 NCBI chr 3:68,656,172...68,656,369
Ensembl chr 3:68,656,172...68,656,363 		JBrowse link
snoRNA guided rRNA pseudouridine synthesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dkc1 dyskerin pseudouridine synthase 1 IDA RGD PMID:12446766 RGD:633420
G Gar1 GAR1 ribonucleoprotein involved_in IDA
IBA
IEA		 GO_REF:0000033
GO_REF:0000118		 GO_Central
TreeGrafter
RGD		 PMID:12446766 GO_REF:0000033 GO_REF:0000118, RGD:633420 NCBI chr 2:218,375,231...218,382,509
Ensembl chr 2:218,375,353...218,382,524 		JBrowse link
G Nhp2 NHP2 ribonucleoprotein IDA RGD PMID:12446766 RGD:633420 NCBI chr10:35,877,057...35,880,399
Ensembl chr10:35,877,054...35,882,545 		JBrowse link
G Nop10 NOP10 ribonucleoprotein IDA RGD PMID:12446766 RGD:633420 NCBI chr 3:99,066,857...99,067,942
Ensembl chr 3:99,066,857...99,067,942 		JBrowse link
snRNA (adenine-N6)-methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mettl16 methyltransferase 16, RNA N6-adenosine involved_in ISO (PMID:28525753), (PMID:29051200), (PMID:32266935) RGD PMID:28525753 PMID:29051200 PMID:32266935 NCBI chr10:59,640,915...59,697,291
Ensembl chr10:59,640,972...59,687,061 		JBrowse link
G Mettl4 methyltransferase 4, N6-adenosine involved_in ISO (PMID:31913360) RGD PMID:31913360 NCBI chr 9:111,440,976...111,523,871
Ensembl chr 9:111,441,027...111,464,749 		JBrowse link
snRNA modification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mepce methylphosphate capping enzyme involved_in ISO
IBA		 (PMID:17643375), (PMID:19906723), (PMID:24360279), (PMID:30559425)
GO_REF:0000033		 RGD
GO_Central		 PMID:17643375 PMID:19906723 PMID:24360279 PMID:30559425 GO_REF:0000033 NCBI chr12:18,911,796...18,916,515
Ensembl chr12:18,911,796...18,916,514 		JBrowse link
snRNA pseudouridine synthesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dkc1 dyskerin pseudouridine synthase 1 involved_in IBA
IEA		 GO_REF:0000033
GO_REF:0000118		 GO_Central
TreeGrafter		 GO_REF:0000033 GO_REF:0000118
G Nhp2 NHP2 ribonucleoprotein involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:35,877,057...35,880,399
Ensembl chr10:35,877,054...35,882,545 		JBrowse link
G Nop10 NOP10 ribonucleoprotein involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:99,066,857...99,067,942
Ensembl chr 3:99,066,857...99,067,942 		JBrowse link
G Nop10l1 NOP10 ribonucleoprotein like 1 involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 NCBI chr 3:68,656,172...68,656,369
Ensembl chr 3:68,656,172...68,656,363 		JBrowse link
tRNA (guanine-N7)-methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mettl1 methyltransferase 1, tRNA methylguanosine involved_in ISO (PMID:36599982), (PMID:36599985), (PMID:37369656) RGD PMID:36599982 PMID:36599985 PMID:37369656 NCBI chr 7:62,864,860...62,869,202
Ensembl chr 7:62,864,853...62,869,202 		JBrowse link
G Wdr4 WD repeat domain 4 involved_in ISO (PMID:36599982), (PMID:36599985), (PMID:37369656) RGD PMID:36599982 PMID:36599985 PMID:37369656 NCBI chr20:9,587,205...9,611,434
Ensembl chr20:9,587,207...9,603,581 		JBrowse link
tRNA acetylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nat10 N-acetyltransferase 10 involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 3:90,111,643...90,149,891
Ensembl chr 3:90,111,645...90,149,927 		JBrowse link
tRNA C3-cytosine methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dalrd3 DALR anticodon binding domain containing 3 involved_in ISO
IBA
IEA		 (PMID:32427860)
GO_REF:0000033
GO_REF:0000118		 RGD
GO_Central
TreeGrafter		 PMID:32427860 GO_REF:0000033 GO_REF:0000118 NCBI chr 8:109,264,100...109,268,560
Ensembl chr 8:109,265,676...109,268,568 		JBrowse link
G Mettl8 methyltransferase 8, tRNA N3-cytidine involved_in ISO (PMID:34774131), (PMID:35017528) RGD PMID:34774131 PMID:35017528 NCBI chr 3:55,731,453...55,863,652
Ensembl chr 3:55,770,167...55,863,676 		JBrowse link
tRNA C5-cytosine methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nsun6 NOP2/Sun RNA methyltransferase 6 involved_in ISO (PMID:26160102) RGD PMID:26160102 NCBI chr17:77,912,374...77,955,694
Ensembl chr17:77,912,377...77,950,006 		JBrowse link
tRNA dihydrouridine synthesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dus1l dihydrouridine synthase 1-like involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000117
(PMID:34798057)		 UniProt
RGD		 PMID:34798057 GO_REF:0000024 GO_REF:0000117 NCBI chr10:106,055,519...106,062,656
Ensembl chr10:106,055,519...106,062,781 		JBrowse link
G Dus2 dihydrouridine synthase 2 involved_in ISO
IBA		 (PMID:26429968), (PMID:34798057)
GO_REF:0000033		 RGD
GO_Central		 PMID:26429968 PMID:34798057 GO_REF:0000033 NCBI chr19:33,906,517...33,954,922
Ensembl chr19:33,911,750...33,954,709 		JBrowse link
G Dus3l dihydrouridine synthase 3-like involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000117
(PMID:34556860), (PMID:34798057)		 UniProt
RGD		 PMID:34556860 PMID:34798057 GO_REF:0000024 GO_REF:0000117 NCBI chr 9:1,593,491...1,598,663
Ensembl chr 9:1,594,123...1,598,655 		JBrowse link
G Dus4l dihydrouridine synthase 4-like involved_in ISO (PMID:34798057) RGD PMID:34798057 NCBI chr 6:48,228,111...48,242,553
Ensembl chr 6:48,228,111...48,242,449 		JBrowse link
tRNA methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alkbh8 alkB homolog 8, tRNA methyltransferase involved_in ISO
IBA		 (PMID:20308323), (PMID:31079898)
GO_REF:0000033
(MGI:4461096|PMID:20123966)		 RGD
GO_Central		 PMID:20123966 PMID:20308323 PMID:31079898 GO_REF:0000033 MGI:4461096 NCBI chr 6:378,779...449,382
Ensembl chr 6:378,100...452,165 		JBrowse link
G Bcdin3d BCDIN3 domain containing RNA methyltransferase involved_in ISO
ISS		 (PMID:28119416), (PMID:31919512)
GO_REF:0000024		 RGD
UniProt		 PMID:28119416 PMID:31919512 GO_REF:0000024 NCBI chr 7:130,605,540...130,610,134
Ensembl chr 7:130,605,541...130,610,115 		JBrowse link
G ENSRNOG00000064902 involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 Ensembl chr  X:10,442,877...10,443,894 JBrowse link
G ENSRNOG00000065471 involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 Ensembl chr18:1,658,333...1,658,748 JBrowse link
G Ftsj1 FtsJ RNA 2'-O-methyltransferase 1 involved_in ISO
IBA		 UniProtKB:P38238 (PMID:25404562), (PMID:36720500)
GO_REF:0000033		 RGD
GO_Central		 PMID:25404562 PMID:36720500 GO_REF:0000033 NCBI chr  X:14,243,684...14,256,555
Ensembl chr  X:14,244,050...14,252,030 		JBrowse link
G Gtpbp3 GTP binding protein 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr16:18,175,766...18,180,857
Ensembl chr16:18,175,766...18,180,857 		JBrowse link
G Lcmt2 leucine carboxyl methyltransferase 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:108,099,960...108,102,084
Ensembl chr 3:108,099,961...108,102,084 		JBrowse link
G Mettl1 methyltransferase 1, tRNA methylguanosine involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:62,864,860...62,869,202
Ensembl chr 7:62,864,853...62,869,202 		JBrowse link
G Mettl2 methyltransferase like 2 involved_in ISO MGI:5903740 (PMID:28655767)
(PMID:34268557)		 RGD PMID:28655767 PMID:34268557 NCBI chr10:90,095,527...90,109,354
Ensembl chr10:90,095,527...90,119,528 		JBrowse link
G Mettl6 methyltransferase 6, tRNA N3-cytidine involved_in ISO (PMID:32923617), (PMID:34268557), (PMID:34862464), (PMID:34922197)
MGI:5903741 (PMID:28655767)		 RGD PMID:28655767 PMID:32923617 PMID:34268557 PMID:34862464 PMID:34922197 NCBI chr16:6,683,820...6,699,013
Ensembl chr16:6,583,465...6,698,975 		JBrowse link
G Mto1 mitochondrial tRNA translation optimization 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:79,309,681...79,335,231
Ensembl chr 8:79,309,982...79,335,231 		JBrowse link
G Nop2 NOP2 nucleolar protein involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 NCBI chr 4:157,932,731...157,944,462
Ensembl chr 4:157,932,716...157,944,459 		JBrowse link
G Nsun2 NOP2/Sun RNA methyltransferase 2 involved_in ISO
IBA		 (PMID:17071714), (PMID:31287866)
GO_REF:0000033
(MGI:5304206|PMID:22144916), (MGI:6194005|PMID:22885326), (MGI:6368097|PMID:31287866), (MGI:6368099|PMID:23871666), (MGI:6368109|PMID:31276587)		 RGD
GO_Central		 PMID:17071714 PMID:22144916 PMID:22885326 PMID:23871666 PMID:31276587 More... GO_REF:0000033 MGI:5304206 MGI:6194005 MGI:6368097 MGI:6368099 MGI:6368109 NCBI chr 1:33,662,139...33,685,887
Ensembl chr 1:33,662,139...33,685,862 		JBrowse link
G Nsun6 NOP2/Sun RNA methyltransferase 6 involved_in ISO (PMID:28531330) RGD PMID:28531330 NCBI chr17:77,912,374...77,955,694
Ensembl chr17:77,912,377...77,950,006 		JBrowse link
G Tarbp1 TAR (HIV-1) RNA binding protein 1 involved_in IEA
IBA		 GO_REF:0000002
GO_REF:0000033
GO_REF:0000118		 InterPro
GO_Central
TreeGrafter		 GO_REF:0000002 GO_REF:0000033 GO_REF:0000118 NCBI chr19:54,398,268...54,449,293
Ensembl chr19:54,398,253...54,449,261 		JBrowse link
G Thada THADA, armadillo repeat containing involved_in ISO
IBA		 UniProtKB:Q03496 (PMID:25404562)
GO_REF:0000033		 RGD
GO_Central		 PMID:25404562 GO_REF:0000033 NCBI chr 6:10,183,942...10,488,007
Ensembl chr 6:10,183,982...10,487,159 		JBrowse link
G Thumpd2 THUMP domain containing 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:13,924,742...13,976,657
Ensembl chr 6:13,924,765...13,976,657 		JBrowse link
G Thumpd3 THUMP domain containing 3 involved_in ISO
IBA		 (PMID:34669960)
GO_REF:0000033		 RGD
GO_Central		 PMID:34669960 GO_REF:0000033 NCBI chr 4:146,185,422...146,209,802
Ensembl chr 4:146,185,503...146,211,246 		JBrowse link
G Trdmt1 tRNA aspartic acid methyltransferase 1 involved_in
acts_upstream_of_or_within		 ISO
ISS		 (MGI:6194005|PMID:22885326)
MGI:3695409 (PMID:16424344)
GO_REF:0000024		 RGD
UniProt		 PMID:16424344 PMID:22885326 GO_REF:0000024 MGI:6194005 NCBI chr17:76,601,966...76,646,104
Ensembl chr17:76,610,543...76,645,439 		JBrowse link
G Trmo tRNA methyltransferase O involved_in ISS
ISO		 GO_REF:0000024
(PMID:25063302)		 UniProt
RGD		 PMID:25063302 GO_REF:0000024 NCBI chr 5:60,663,106...60,676,423
Ensembl chr 5:60,667,864...60,676,423 		JBrowse link
G Trmt10a tRNA methyltransferase 10A involved_in ISO
ISS		 (PMID:25053765)
GO_REF:0000024		 RGD
UniProt		 PMID:25053765 GO_REF:0000024 NCBI chr 2:226,669,445...226,684,166
Ensembl chr 2:226,669,832...226,684,151 		JBrowse link
G Trmt112 tRNA methyltransferase activator subunit 11-2 involved_in ISO (PMID:34669960) RGD PMID:34669960 NCBI chr 1:204,103,298...204,104,151 JBrowse link
G Trmt12 tRNA methyltransferase 12 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:90,417,846...90,419,472
Ensembl chr 7:90,417,862...90,419,867 		JBrowse link
G Trmt13 tRNA methyltransferase 13 homolog involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:204,533,630...204,547,711
Ensembl chr 2:204,533,632...204,546,843 		JBrowse link
G Trmt44 tRNA methyltransferase 44 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr14:75,175,331...75,204,291
Ensembl chr14:75,182,029...75,200,147 		JBrowse link
G Trmt61a tRNA methyltransferase 61A involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:130,737,230...130,743,251
Ensembl chr 6:130,737,219...130,743,243 		JBrowse link
G Trmt9b tRNA methyltransferase 9B (putative) involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr16:55,740,551...55,792,198
Ensembl chr16:55,743,018...55,792,144 		JBrowse link
G Tyw3 tRNA-yW synthesizing protein 3 homolog involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:243,529,912...243,552,043
Ensembl chr 2:243,529,946...243,552,039 		JBrowse link
G Wdr6 WD repeat domain 6 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:109,268,079...109,274,504
Ensembl chr 8:109,268,079...109,274,499 		JBrowse link
tRNA methylthiolation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdk5rap1 CDK5 regulatory subunit associated protein 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000118
GO_REF:0000108
MGI:5750452 (MGI:5635958|PMID:25738458)		 TreeGrafter
GOC
RGD		 PMID:25738458 GO_REF:0000108 GO_REF:0000118 MGI:5635958 NCBI chr 3:142,838,081...142,872,669
Ensembl chr 3:142,708,028...142,872,677 		JBrowse link
G Cdkal1 CDK5 regulatory subunit associated protein 1-like 1 acts_upstream_of_or_within ISO MGI:5301443 (PMID:21841312) RGD PMID:21841312 NCBI chr17:34,718,701...35,271,276
Ensembl chr17:34,718,687...35,407,524 		JBrowse link
G ENSRNOG00000064935 involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 Ensembl chr 3:142,862,574...142,872,677 JBrowse link
tRNA modification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07005588.1 involved_in IEA GO_REF:0000002
GO_REF:0000118		 InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118
G Aars1 alanyl-tRNA synthetase 1 involved_in
acts_upstream_of_or_within		 ISS
ISO		 GO_REF:0000024
(PMID:16906134)
(MGI:5609717|PMID:25422440), (MGI:6159204|PMID:29769718)		 UniProt
RGD		 PMID:16906134 PMID:25422440 PMID:29769718 GO_REF:0000024 MGI:5609717 MGI:6159204 NCBI chr19:38,999,130...39,021,152
Ensembl chr19:38,999,163...39,021,147 		JBrowse link
G Ankrd16 ankyrin repeat domain 16 involved_in ISS
ISO		 GO_REF:0000024
(MGI:6159204|PMID:29769718)		 UniProt
RGD		 PMID:29769718 GO_REF:0000024 MGI:6159204 NCBI chr17:66,735,325...66,748,533
Ensembl chr17:66,737,261...66,748,533 		JBrowse link
G B3gntl1 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like 1 involved_in IDA
ISO		 PMID:37992713
(PMID:37992713)		 RGD PMID:37992713 PMID:37992713 RGD:401966881 NCBI chr10:106,870,237...106,933,723
Ensembl chr10:106,873,169...106,933,637 		JBrowse link
G Dtwd1 DTW domain containing 1 involved_in ISS
IBA
IEA
ISO		 GO_REF:0000024
GO_REF:0000033
GO_REF:0000118
GO_REF:0000107
(PMID:31804502)		 UniProt
GO_Central
TreeGrafter
Ensembl
RGD		 PMID:31804502 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr 3:113,392,402...113,409,322
Ensembl chr 3:113,392,457...113,408,105 		JBrowse link
G Dtwd2 DTW domain containing 2 involved_in ISO (PMID:31804502) RGD PMID:31804502 NCBI chr18:42,811,783...42,902,040
Ensembl chr18:42,816,681...42,901,832 		JBrowse link
G Elp5 elongator acetyltransferase complex subunit 5 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:54,692,526...54,704,255
Ensembl chr10:54,692,530...54,704,923 		JBrowse link
G Gtdc1 glycosyltransferase-like domain containing 1 involved_in IDA
ISO
IEA		 PMID:37992713
(PMID:37992713)
GO_REF:0000107		 RGD
Ensembl		 PMID:37992713 PMID:37992713 GO_REF:0000107, RGD:401966881 NCBI chr 3:28,766,640...29,161,668
Ensembl chr 3:28,766,645...29,162,271 		JBrowse link
G Mettl1 methyltransferase 1, tRNA methylguanosine involved_in ISO (PMID:12403464), (PMID:15861136) RGD PMID:12403464 PMID:15861136 NCBI chr 7:62,864,860...62,869,202
Ensembl chr 7:62,864,853...62,869,202 		JBrowse link
G Mettl2 methyltransferase like 2 involved_in ISO (PMID:34268557) RGD PMID:34268557 NCBI chr10:90,095,527...90,109,354
Ensembl chr10:90,095,527...90,119,528 		JBrowse link
G Mettl6 methyltransferase 6, tRNA N3-cytidine involved_in ISO (PMID:34268557) RGD PMID:34268557 NCBI chr16:6,683,820...6,699,013
Ensembl chr16:6,583,465...6,698,975 		JBrowse link
G Nsun6 NOP2/Sun RNA methyltransferase 6 involved_in ISO (PMID:37226891) RGD PMID:37226891 NCBI chr17:77,912,374...77,955,694
Ensembl chr17:77,912,377...77,950,006 		JBrowse link
G Osgep O-sialoglycoprotein endopeptidase involved_in ISO (PMID:28805828) RGD PMID:28805828 NCBI chr15:24,137,149...24,144,568
Ensembl chr15:24,137,153...24,144,568 		JBrowse link
G Sars1 seryl-tRNA synthetase 1 involved_in IEA
ISO		 GO_REF:0000107
(PMID:34268557)		 Ensembl
RGD		 PMID:34268557 GO_REF:0000107 NCBI chr 2:196,065,543...196,081,240
Ensembl chr 2:196,065,430...196,081,277 		JBrowse link
G Thg1l tRNA-histidine guanylyltransferase 1-like involved_in ISS
IEA		 GO_REF:0000024
GO_REF:0000104		 UniProt GO_REF:0000024 GO_REF:0000104 NCBI chr10:30,387,929...30,396,579
Ensembl chr10:30,387,940...30,396,687 		JBrowse link
G Thumpd1 THUMP domain containing 1 involved_in IEA GO_REF:0000002
GO_REF:0000118		 InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr 1:174,078,875...174,084,915
Ensembl chr 1:174,078,878...174,084,937 		JBrowse link
G Trdmt1 tRNA aspartic acid methyltransferase 1 involved_in ISO (PMID:16424344) RGD PMID:16424344 NCBI chr17:76,601,966...76,646,104
Ensembl chr17:76,610,543...76,645,439 		JBrowse link
G Trit1 tRNA isopentenyltransferase 1 involved_in ISO
IBA		 (PMID:24126054)
GO_REF:0000033
(MGI:5476410|PMID:23289710)		 RGD
GO_Central		 PMID:23289710 PMID:24126054 GO_REF:0000033 MGI:5476410 NCBI chr 5:135,293,472...135,341,522
Ensembl chr 5:135,295,330...135,338,764 		JBrowse link
G Trub1 TruB pseudouridine synthase family member 1 involved_in ISS
IBA
ISO		 GO_REF:0000024
GO_REF:0000033
(PMID:32926445)		 UniProt
GO_Central
RGD		 PMID:32926445 GO_REF:0000024 GO_REF:0000033 NCBI chr 1:256,513,418...256,554,549
Ensembl chr 1:256,515,562...256,552,814 		JBrowse link
G Wdr4 WD repeat domain 4 involved_in ISO
IBA		 (PMID:15861136)
GO_REF:0000033		 RGD
GO_Central		 PMID:15861136 GO_REF:0000033 NCBI chr20:9,587,205...9,611,434
Ensembl chr20:9,587,207...9,603,581 		JBrowse link
tRNA N1-guanine methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Trmt10a tRNA methyltransferase 10A involved_in ISO
IEA
IBA		 (PMID:32392304)
GO_REF:0000118
GO_REF:0000033
GO_REF:0000107		 RGD
TreeGrafter
GO_Central
Ensembl		 PMID:32392304 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr 2:226,669,445...226,684,166
Ensembl chr 2:226,669,832...226,684,151 		JBrowse link
G Trmt10b tRNA methyltransferase 10B involved_in IBA
IEA		 GO_REF:0000033
GO_REF:0000118		 GO_Central
TreeGrafter		 GO_REF:0000033 GO_REF:0000118 NCBI chr 5:59,548,845...59,572,529
Ensembl chr 5:59,548,869...59,572,526 		JBrowse link
G Trmt5 tRNA methyltransferase 5 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:91,963,558...91,987,660
Ensembl chr 6:91,943,724...91,987,555 		JBrowse link
tRNA N2-guanine methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Trmt1 tRNA methyltransferase 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr19:23,456,756...23,471,581
Ensembl chr19:23,456,756...23,466,956 		JBrowse link
G Trmt1l tRNA methyltransferase 1-like involved_in IEA
IBA		 GO_REF:0000118
GO_REF:0000033		 TreeGrafter
GO_Central		 GO_REF:0000033 GO_REF:0000118 NCBI chr13:63,510,097...63,543,268
Ensembl chr13:63,510,204...63,543,266 		JBrowse link
tRNA nucleoside ribose methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ftsj1 FtsJ RNA 2'-O-methyltransferase 1 involved_in ISO (PMID:26310293) RGD PMID:26310293 NCBI chr  X:14,243,684...14,256,555
Ensembl chr  X:14,244,050...14,252,030 		JBrowse link
G Thada THADA, armadillo repeat containing involved_in ISO UniProtKB:Q03496 (PMID:35559166) RGD PMID:35559166 NCBI chr 6:10,183,942...10,488,007
Ensembl chr 6:10,183,982...10,487,159 		JBrowse link
tRNA pseudouridine synthesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pus1 pseudouridine synthase 1 involved_in
acts_upstream_of_or_within		 ISO
IBA
IEA		 (PMID:15772074)
(PMID:11027153), (PMID:11085940), (PMID:15327771)
GO_REF:0000033
GO_REF:0000117
(MGI:1928672|PMID:10094309), (MGI:5810940|PMID:27197761)		 RGD
GO_Central
UniProt		 PMID:10094309 PMID:11027153 PMID:11085940 PMID:15327771 PMID:15772074 More... GO_REF:0000033 GO_REF:0000117 MGI:1928672 MGI:5810940 NCBI chr12:45,880,364...45,889,196
Ensembl chr12:45,880,440...45,889,196 		JBrowse link
G Pus10 pseudouridine synthase 10 involved_in ISO
IBA		 (PMID:30530625), (PMID:31819270)
GO_REF:0000033		 RGD
GO_Central		 PMID:30530625 PMID:31819270 GO_REF:0000033 NCBI chr14:97,621,228...97,684,059
Ensembl chr14:97,621,391...97,684,046 		JBrowse link
G Pus3 pseudouridine synthase 3 involved_in
acts_upstream_of_or_within		 ISO
IBA		 (PMID:27055666)
(PMID:11027153)
GO_REF:0000033		 RGD
GO_Central		 PMID:11027153 PMID:27055666 GO_REF:0000033 NCBI chr 8:33,910,461...33,918,716
Ensembl chr 8:33,911,357...33,918,714 		JBrowse link
G Pus7 pseudouridine synthase 7 involved_in ISO (PMID:29628141), (PMID:34718722) RGD PMID:29628141 PMID:34718722 NCBI chr 4:11,360,169...11,401,139
Ensembl chr 4:11,360,188...11,401,172 		JBrowse link
G Pusl1 pseudouridine synthase like 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:166,497,643...166,500,647
Ensembl chr 5:166,496,755...166,500,611 		JBrowse link
tRNA thio-modification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctu1 cytosolic thiouridylase subunit 1 involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 1:94,115,431...94,121,224
Ensembl chr 1:94,115,420...94,121,221 		JBrowse link
G Ctu2 cytosolic thiouridylase subunit 2 involved_in ISS
IEA		 GO_REF:0000024
GO_REF:0000104		 UniProt GO_REF:0000024 GO_REF:0000104 NCBI chr19:50,539,184...50,544,629
Ensembl chr19:50,539,352...50,544,623 		JBrowse link
G Mocs3 molybdenum cofactor synthesis 3 involved_in ISO (PMID:19017811), (PMID:30817134) RGD PMID:19017811 PMID:30817134 NCBI chr 3:156,939,763...156,941,723
Ensembl chr 3:156,939,809...156,941,890 		JBrowse link
G Urm1 ubiquitin related modifier 1 involved_in ISO (PMID:19017811) RGD PMID:19017811 NCBI chr 3:13,100,340...13,117,064
Ensembl chr 3:13,092,200...13,117,642
Ensembl chr 3:13,092,200...13,117,642 		JBrowse link
tRNA threonylcarbamoyladenosine modification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gon7 GON7 subunit of KEOPS complex involved_in ISO (PMID:31481669) RGD PMID:31481669 NCBI chr 6:121,882,565...121,898,452
Ensembl chr 6:121,885,694...121,898,643
Ensembl chr 6:121,885,694...121,898,643 		JBrowse link
G Osgep O-sialoglycoprotein endopeptidase involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000104
(PMID:28805828), (PMID:31481669)		 UniProt
RGD		 PMID:28805828 PMID:31481669 GO_REF:0000024 GO_REF:0000104 NCBI chr15:24,137,149...24,144,568
Ensembl chr15:24,137,153...24,144,568 		JBrowse link
G Osgepl1 O-sialoglycoprotein endopeptidase-like 1 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000104
(PMID:29760464), (PMID:32047918)		 UniProt
RGD		 PMID:29760464 PMID:32047918 GO_REF:0000024 GO_REF:0000104 NCBI chr 9:48,214,995...48,229,440
Ensembl chr 9:48,215,402...48,229,388 		JBrowse link
G Tprkb Tp53rk binding protein involved_in ISO
IBA
IEA
ISS		 (PMID:28805828)
GO_REF:0000033
GO_REF:0000118
GO_REF:0000024		 RGD
GO_Central
TreeGrafter
UniProt		 PMID:28805828 GO_REF:0000024 GO_REF:0000033 GO_REF:0000118 NCBI chr 4:118,342,910...118,357,908
Ensembl chr 4:118,342,945...118,357,901 		JBrowse link
G Yrdc yrdC N(6)-threonylcarbamoyltransferase domain containing involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:29760464), (PMID:31481669), (PMID:34545459)		 UniProt
Ensembl
RGD		 PMID:29760464 PMID:31481669 PMID:34545459 GO_REF:0000024 GO_REF:0000107 NCBI chr 5:137,110,244...137,115,127
Ensembl chr 5:137,110,279...137,115,120 		JBrowse link
tRNA wobble adenosine to inosine editing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adat2 adenosine deaminase, tRNA-specific 2 involved_in IEA
IBA		 GO_REF:0000002
GO_REF:0000118
GO_REF:0000033		 InterPro
TreeGrafter
GO_Central		 GO_REF:0000002 GO_REF:0000033 GO_REF:0000118 NCBI chr 1:7,954,520...7,975,254
Ensembl chr 1:7,954,631...7,975,251 		JBrowse link
tRNA wobble base 5-methoxycarbonylmethyl-2-thiouridinylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Elp1 elongator acetyltransferase complex subunit 1 involved_in IBA
IEA		 GO_REF:0000033
GO_REF:0000118		 GO_Central
TreeGrafter		 GO_REF:0000033 GO_REF:0000118 NCBI chr 5:71,453,338...71,505,833
Ensembl chr 5:71,456,310...71,505,762 		JBrowse link
G Elp3 elongator acetyltransferase complex subunit 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr15:39,754,635...39,816,482
Ensembl chr15:39,754,632...39,816,445 		JBrowse link
tRNA wobble base cytosine methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nsun3 NOP2/Sun RNA methyltransferase 3 involved_in ISO (PMID:27214402), (PMID:27356879), (PMID:27497299) RGD PMID:27214402 PMID:27356879 PMID:27497299 NCBI chr11:37,490,832...37,575,607
Ensembl chr11:37,490,838...37,568,543 		JBrowse link
tRNA wobble cytosine modification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alkbh1 alkB homolog 1, histone H2A dioxygenase involved_in ISO (PMID:27497299) RGD PMID:27497299 NCBI chr 6:107,068,301...107,088,784
Ensembl chr 6:107,068,475...107,088,759 		JBrowse link
G Nat10 N-acetyltransferase 10 involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 NCBI chr 3:90,111,643...90,149,891
Ensembl chr 3:90,111,645...90,149,927 		JBrowse link
tRNA wobble position uridine thiolation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctu1 cytosolic thiouridylase subunit 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:94,115,431...94,121,224
Ensembl chr 1:94,115,420...94,121,221 		JBrowse link
G Ctu2 cytosolic thiouridylase subunit 2 involved_in IBA
IEA		 GO_REF:0000033
GO_REF:0000118		 GO_Central
TreeGrafter		 GO_REF:0000033 GO_REF:0000118 NCBI chr19:50,539,184...50,544,629
Ensembl chr19:50,539,352...50,544,623 		JBrowse link
G Mocs3 molybdenum cofactor synthesis 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:156,939,763...156,941,723
Ensembl chr 3:156,939,809...156,941,890 		JBrowse link
G Trmu tRNA mitochondrial 2-thiouridylase involved_in IBA
IEA		 GO_REF:0000033
GO_REF:0000118		 GO_Central
TreeGrafter		 GO_REF:0000033 GO_REF:0000118 NCBI chr 7:116,969,750...116,987,704
Ensembl chr 7:116,969,756...116,986,355 		JBrowse link
tRNA wobble uridine modification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alkbh8 alkB homolog 8, tRNA methyltransferase involved_in ISO
IBA		 (PMID:21285950), (PMID:31079898)
GO_REF:0000033
(MGI:5607402|PMID:20583019)		 RGD
GO_Central		 PMID:20583019 PMID:21285950 PMID:31079898 GO_REF:0000033 MGI:5607402 NCBI chr 6:378,779...449,382
Ensembl chr 6:378,100...452,165 		JBrowse link
G Ctu1 cytosolic thiouridylase subunit 1 involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 1:94,115,431...94,121,224
Ensembl chr 1:94,115,420...94,121,221 		JBrowse link
G Ctu2 cytosolic thiouridylase subunit 2 involved_in ISS
IEA		 GO_REF:0000024
GO_REF:0000104		 UniProt GO_REF:0000024 GO_REF:0000104 NCBI chr19:50,539,184...50,544,629
Ensembl chr19:50,539,352...50,544,623 		JBrowse link
G Elp1 elongator acetyltransferase complex subunit 1 involved_in ISO
IEA		 (MGI:5506828|PMID:23717213)
GO_REF:0000107		 RGD
Ensembl		 PMID:23717213 GO_REF:0000107 MGI:5506828 NCBI chr 5:71,453,338...71,505,833
Ensembl chr 5:71,456,310...71,505,762 		JBrowse link
G Elp2 elongator acetyltransferase complex subunit 2 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr18:15,885,940...15,921,564
Ensembl chr18:15,885,934...15,921,599 		JBrowse link
G Elp3 elongator acetyltransferase complex subunit 3 involved_in ISO (PMID:29415125) RGD PMID:29415125 NCBI chr15:39,754,635...39,816,482
Ensembl chr15:39,754,632...39,816,445 		JBrowse link
G Elp4 elongator acetyltransferase complex subunit 4 involved_in IEA
IBA		 GO_REF:0000002
GO_REF:0000033
GO_REF:0000118		 InterPro
GO_Central
TreeGrafter		 GO_REF:0000002 GO_REF:0000033 GO_REF:0000118 NCBI chr 3:92,162,271...92,385,251
Ensembl chr 3:92,162,280...92,385,243 		JBrowse link
G Elp4-ps1 elongator acetyltransferase complex subunit 4, pseudogene 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:172,729,315...172,730,773
Ensembl chr 2:172,728,560...172,730,748 		JBrowse link
G Elp5 elongator acetyltransferase complex subunit 5 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:54,692,526...54,704,255
Ensembl chr10:54,692,530...54,704,923 		JBrowse link
G Elp6 elongator acetyltransferase complex subunit 6 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 8:110,280,059...110,295,070
Ensembl chr 8:110,279,979...110,295,067 		JBrowse link
G Gtpbp3 GTP binding protein 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr16:18,175,766...18,180,857
Ensembl chr16:18,175,766...18,180,857 		JBrowse link
G Kti12 KTI12 chromatin associated involved_in IEA
IBA		 GO_REF:0000118
GO_REF:0000033		 TreeGrafter
GO_Central		 GO_REF:0000033 GO_REF:0000118 NCBI chr 5:123,601,059...123,602,581
Ensembl chr 5:123,599,436...123,613,964 		JBrowse link
G Mocs3 molybdenum cofactor synthesis 3 involved_in ISO (PMID:19017811) RGD PMID:19017811 NCBI chr 3:156,939,763...156,941,723
Ensembl chr 3:156,939,809...156,941,890 		JBrowse link
G Mto1 mitochondrial tRNA translation optimization 1 acts_upstream_of_or_within ISO SGD:S000003205 (PMID:14522080) RGD PMID:14522080 NCBI chr 8:79,309,681...79,335,231
Ensembl chr 8:79,309,982...79,335,231 		JBrowse link
G Trmt9b tRNA methyltransferase 9B (putative) involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr16:55,740,551...55,792,198
Ensembl chr16:55,743,018...55,792,144 		JBrowse link
G Urm1 ubiquitin related modifier 1 involved_in ISO (PMID:19017811) RGD PMID:19017811 NCBI chr 3:13,100,340...13,117,064
Ensembl chr 3:13,092,200...13,117,642
Ensembl chr 3:13,092,200...13,117,642 		JBrowse link
tRNA-guanine transglycosylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Qng1 Q-nucleotide N-glycosylase 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr17:6,281,377...6,288,976
Ensembl chr17:6,281,400...6,288,975 		JBrowse link
G Qtrt1 queuine tRNA-ribosyltransferase catalytic subunit 1 involved_in IEA
IBA
ISO		 GO_REF:0000117
GO_REF:0000033
(MGI:3850292|PMID:19414587), (MGI:7565917|PMID:35815944)
(PMID:20354154), (PMID:34241577)		 UniProt
GO_Central
RGD		 PMID:19414587 PMID:20354154 PMID:34241577 PMID:35815944 GO_REF:0000033 GO_REF:0000117 MGI:3850292 MGI:7565917 NCBI chr 8:19,965,801...19,973,843
Ensembl chr 8:19,966,336...19,973,837 		JBrowse link
G Qtrt2 queuine tRNA-ribosyltransferase accessory subunit 2 involved_in ISO
IBA		 (PMID:20354154), (PMID:34241577)
GO_REF:0000033
(MGI:3850292|PMID:19414587), (MGI:7565917|PMID:35815944)		 RGD
GO_Central		 PMID:19414587 PMID:20354154 PMID:34241577 PMID:35815944 GO_REF:0000033 MGI:3850292 MGI:7565917 NCBI chr11:56,806,417...56,837,239
Ensembl chr11:56,806,385...56,837,228 		JBrowse link
U6 2'-O-snRNA methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Larp7 La ribonucleoprotein 7, transcriptional regulator involved_in ISS
ISO		 GO_REF:0000024
(MGI:6400674|PMID:32017896)
(PMID:32017898)		 UniProt
RGD		 PMID:32017896 PMID:32017898 GO_REF:0000024 MGI:6400674 NCBI chr 2:215,997,641...216,012,833
Ensembl chr 2:215,997,649...216,012,865 		JBrowse link
wobble position ribose methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ftsj1 FtsJ RNA 2'-O-methyltransferase 1 involved_in ISO (PMID:32558197) RGD PMID:32558197 NCBI chr  X:14,243,684...14,256,555
Ensembl chr  X:14,244,050...14,252,030 		JBrowse link
G Wdr6 WD repeat domain 6 involved_in ISS
ISO
IEA		 GO_REF:0000024
(PMID:32558197)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:32558197 GO_REF:0000024 GO_REF:0000107 NCBI chr 8:109,268,079...109,274,504
Ensembl chr 8:109,268,079...109,274,499 		JBrowse link
wybutosine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Jmjd7 jumonji domain containing 7 involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 NCBI chr 3:106,998,454...107,004,538
Ensembl chr 3:106,998,477...107,004,538 		JBrowse link
G Kdm8 lysine demethylase 8 involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 NCBI chr 1:180,013,969...180,028,829
Ensembl chr 1:180,020,656...180,028,841 		JBrowse link
G Lcmt2 leucine carboxyl methyltransferase 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:108,099,960...108,102,084
Ensembl chr 3:108,099,961...108,102,084 		JBrowse link
G Trmt12 tRNA methyltransferase 12 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:90,417,846...90,419,472
Ensembl chr 7:90,417,862...90,419,867 		JBrowse link
G Tyw1 tRNA-yW synthesizing protein 1 homolog involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr12:26,332,020...26,418,286
Ensembl chr12:26,330,351...26,418,208 		JBrowse link
G Tyw3 tRNA-yW synthesizing protein 3 homolog involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:243,529,912...243,552,043
Ensembl chr 2:243,529,946...243,552,039 		JBrowse link
G Tyw5 tRNA-yW synthesizing protein 5 involved_in ISO
IBA		 (PMID:20739293), (PMID:20972222)
GO_REF:0000033		 RGD
GO_Central		 PMID:20739293 PMID:20972222 GO_REF:0000033 NCBI chr 9:58,961,100...58,979,188
Ensembl chr 9:58,961,106...58,979,188 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20413
    metabolic process 11835
      organic substance metabolic process 11328
        macromolecule metabolic process 9578
          macromolecule modification 2218
            RNA modification 163
              RNA acetylation + 1
              RNA methylation + 70
              RNA nucleotide deletion + 0
              RNA nucleotide insertion + 0
              base conversion or substitution editing + 13
              chloroplast RNA modification + 0
              mRNA modification + 24
              mitochondrial RNA modification + 10
              oxidative RNA demethylation 2
              pseudouridine synthesis + 24
              rRNA modification + 34
              snRNA modification + 8
              tRNA modification + 95
Path 2
Term Annotations click to browse term
  biological_process 20413
    metabolic process 11835
      organic substance metabolic process 11328
        organic cyclic compound metabolic process 6260
          nucleobase-containing compound metabolic process 5743
            nucleic acid metabolic process 5144
              RNA metabolic process 4542
                RNA modification 163
                  RNA acetylation + 1
                  RNA methylation + 70
                  RNA nucleotide deletion + 0
                  RNA nucleotide insertion + 0
                  base conversion or substitution editing + 13
                  chloroplast RNA modification + 0
                  mRNA modification + 24
                  mitochondrial RNA modification + 10
                  oxidative RNA demethylation 2
                  pseudouridine synthesis + 24
                  rRNA modification + 34
                  snRNA modification + 8
                  tRNA modification + 95
paths to the root