AABR07012856.1 (null) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: AABR07012856.1 (null) Rattus norvegicus
Analyze
Symbol: AABR07012856.1
Name:
RGD ID: 15004621
Description: Predicted to enable O-methyltransferase activity and RNA methyltransferase activity. Predicted to be involved in RNA methylation and regulatory ncRNA-mediated gene silencing.
Type: protein-coding
Latest Assembly: mRatBN7.2 Ensembl - mRatBN7.2 Assembly Ensembl
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0 Ensembl2211,740,637 - 211,753,297 (+)EnsemblRnor6.0rn6Rnor6.0


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.

Genomics


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 7
Low 3 26 16 6 18 6 74 23 34 10
Below cutoff 17 36 30 1 30 7 10 12 1 7

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENSRNOT00000066924   ⟹   ENSRNOP00000060946
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2196,586,797 - 196,599,658 (+)Ensembl
Rnor_6.0 Ensembl2211,740,637 - 211,753,297 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000115077   ⟹   ENSRNOP00000095551
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2196,587,615 - 196,599,738 (+)Ensembl
Protein Sequences
Ensembl Protein ENSRNOP00000095551.1
Reference Protein Sequences
RefSeq Acc Id: ENSRNOP00000060946   ⟸   ENSRNOT00000066924
RefSeq Acc Id: ENSRNOP00000095551   ⟸   ENSRNOT00000115077

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSRNOG00000042814 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000115077.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.150 UniProtKB/TrEMBL
InterPro Hen1 UniProtKB/TrEMBL
  SAM-dependent_MTases UniProtKB/TrEMBL
PANTHER PTHR21404 UniProtKB/TrEMBL
  SMALL RNA 2'-O-METHYLTRANSFERASE UniProtKB/TrEMBL
Pfam Methyltransf_23 UniProtKB/TrEMBL
PhenoGen AABR07012856.1 PhenoGen
RatGTEx ENSRNOG00000042814 RatGTEx
Superfamily-SCOP SSF53335 UniProtKB/TrEMBL
UniProt A0A8I6GL71_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-11-08 AABR07012856.1        Symbol and Name status set to provisional 45752 PROVISIONAL