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ONTOLOGY REPORT - ANNOTATIONS

Term:rRNA methylation
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Accession:GO:0031167 term browser browse the term
Definition:The posttranscriptional addition of methyl groups to specific residues in an rRNA molecule.


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rRNA methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dimt1 DIM1 rRNA methyltransferase and ribosome maturation factor involved_in ISO
IBA		 (PMID:25851604)
GO_REF:0000033		 RGD
GO_Central		 PMID:25851604 GO_REF:0000033 NCBI chr 2:38,343,086...38,368,242
Ensembl chr 2:38,354,854...38,368,227 		JBrowse link
G Fbl fibrillarin involved_in ISO
IEA
IBA
ISS		 (PMID:30540930)
GO_REF:0000107
GO_REF:0000033
GO_REF:0000024		 RGD
Ensembl
GO_Central
UniProt		 PMID:30540930 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 1:83,469,832...83,478,932
Ensembl chr 1:83,469,832...83,478,932 		JBrowse link
G Fbll1 fibrillarin-like 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:20,258,656...20,260,299
Ensembl chr10:20,258,656...20,260,299 		JBrowse link
G Ftsj3 FtsJ RNA 2'-O-methyltransferase 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:91,180,945...91,187,389
Ensembl chr10:91,180,696...91,187,397 		JBrowse link
G Mettl5 methyltransferase 5, N6-adenosine involved_in ISO
IBA		 (MGI:6505165|PMID:32783360), (MGI:6884948|PMID:35033535)
(PMID:31328227), (PMID:32217665), (PMID:33357433), (PMID:35033535)
GO_REF:0000033		 RGD
GO_Central		 PMID:31328227 PMID:32217665 PMID:32783360 PMID:33357433 PMID:35033535 GO_REF:0000033 MGI:6505165 MGI:6884948 NCBI chr 3:54,625,790...54,638,066
Ensembl chr 3:54,625,793...54,638,039 		JBrowse link
G Mrm2 mitochondrial rRNA methyltransferase 2 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr12:14,309,556...14,314,759
Ensembl chr12:14,251,941...14,314,118 		JBrowse link
G Nsun4 NOP2/Sun RNA methyltransferase 4 involved_in ISO
IBA		 (PMID:23022348)
GO_REF:0000033
(MGI:5573024|PMID:24516400)		 RGD
GO_Central		 PMID:23022348 PMID:24516400 GO_REF:0000033 MGI:5573024 NCBI chr 5:129,511,224...129,532,498
Ensembl chr 5:129,512,307...129,532,423
Ensembl chr 5:129,512,307...129,532,423 		JBrowse link
G Tfb1m transcription factor B1, mitochondrial involved_in IEA
ISO
IBA
ISS		 GO_REF:0000104
(MGI:3843703|PMID:19356719)
(PMID:31251801)
GO_REF:0000033
GO_REF:0000024		 UniProt
RGD
GO_Central		 PMID:19356719 PMID:31251801 GO_REF:0000024 GO_REF:0000033 GO_REF:0000104 MGI:3843703 NCBI chr 1:44,115,240...44,161,737
Ensembl chr 1:44,119,166...44,161,709 		JBrowse link
G Tfb2m transcription factor B2, mitochondrial involved_in IEA
IBA		 GO_REF:0000104
GO_REF:0000033		 UniProt
GO_Central		 GO_REF:0000033 GO_REF:0000104 NCBI chr13:91,278,889...91,296,709
Ensembl chr13:91,278,898...91,296,657 		JBrowse link
G Trmt112 tRNA methyltransferase activator subunit 11-2 involved_in ISO (PMID:31328227), (PMID:35033535) RGD PMID:31328227 PMID:35033535 NCBI chr 1:204,103,298...204,104,151 JBrowse link
G Zcchc4 zinc finger CCHC-type containing 4 involved_in IEA
IBA
ISS
ISO		 GO_REF:0000002
GO_REF:0000033
GO_REF:0000107
GO_REF:0000024
(PMID:30531910), (PMID:31328227), (PMID:31695039), (PMID:31799605)		 InterPro
GO_Central
Ensembl
UniProt
RGD		 PMID:30531910 PMID:31328227 PMID:31695039 PMID:31799605 GO_REF:0000002 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr14:58,165,467...58,207,071
Ensembl chr14:58,165,460...58,206,743 		JBrowse link
rRNA (guanine-N7)-methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bud23 BUD23, rRNA methyltransferase and ribosome maturation factor involved_in ISO
IBA		 (PMID:25851604)
GO_REF:0000033		 RGD
GO_Central		 PMID:25851604 GO_REF:0000033 NCBI chr12:21,629,551...21,640,758
Ensembl chr12:21,629,536...21,640,751 		JBrowse link
G Trmt112 tRNA methyltransferase activator subunit 11-2 involved_in ISO (PMID:25851604) RGD PMID:25851604 NCBI chr 1:204,103,298...204,104,151 JBrowse link
rRNA 2'-O-methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mrm1 mitochondrial rRNA methyltransferase 1 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr10:69,690,406...69,697,326
Ensembl chr10:69,690,421...69,696,709 		JBrowse link
G Mrm3 mitochondrial rRNA methyltransferase 3 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr10:61,095,920...61,125,421
Ensembl chr10:61,095,952...61,102,630 		JBrowse link
rRNA base methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Emg1 EMG1 N1-specific pseudouridine methyltransferase involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:157,509,258...157,517,540
Ensembl chr 4:157,509,277...157,517,540 		JBrowse link
G Fdxacb1 ferredoxin-fold anticodon binding domain containing 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:51,111,831...51,118,253
Ensembl chr 8:51,113,397...51,118,308 		JBrowse link
G Mettl15 methyltransferase 15, mitochondrial 12S rRNA N4-cytidine involved_in ISO
IBA		 (PMID:31665743), (PMID:32371392)
GO_REF:0000033		 RGD
GO_Central		 PMID:31665743 PMID:32371392 GO_REF:0000033 NCBI chr 3:95,586,855...95,764,392
Ensembl chr 3:95,586,850...95,764,397 		JBrowse link
G Mettl16 methyltransferase 16, RNA N6-adenosine involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:59,640,915...59,697,291
Ensembl chr10:59,640,972...59,687,061 		JBrowse link
G Nop2 NOP2 nucleolar protein involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:157,932,731...157,944,462
Ensembl chr 4:157,932,716...157,944,459 		JBrowse link
G Nsun5 NOP2/Sun RNA methyltransferase 5 involved_in ISO
IBA		 (PMID:31428936), (PMID:31722427)
(MGI:6414744|PMID:31722427)
GO_REF:0000033		 RGD
GO_Central		 PMID:31428936 PMID:31722427 GO_REF:0000033 MGI:6414744 NCBI chr12:21,293,637...21,299,319
Ensembl chr12:21,293,645...21,299,272 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19694
    metabolic process 11456
      methylation 176
        macromolecule methylation 74
          RNA methylation 67
            rRNA methylation 20
              rRNA 2'-O-methylation + 2
              rRNA base methylation + 8
Path 2
Term Annotations click to browse term
  biological_process 19694
    metabolic process 11456
      organic substance metabolic process 10971
        organic cyclic compound metabolic process 6027
          nucleobase-containing compound metabolic process 5524
            nucleic acid metabolic process 4949
              RNA metabolic process 4367
                RNA processing 954
                  rRNA processing 234
                    rRNA modification 28
                      rRNA methylation 20
                        rRNA 2'-O-methylation + 2
                        rRNA base methylation + 8
paths to the root