Tprkb (Tp53rk binding protein) - Rat Genome Database

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Gene: Tprkb (Tp53rk binding protein) Rattus norvegicus
Analyze
Symbol: Tprkb
Name: Tp53rk binding protein
RGD ID: 1309786
Description: Predicted to enable protein kinase binding activity. Predicted to be involved in tRNA threonylcarbamoyladenosine modification. Predicted to be located in cytoplasm. Predicted to be part of EKC/KEOPS complex. Predicted to be active in cytosol and nucleus. Human ortholog(s) of this gene implicated in Galloway-Mowat syndrome 5. Orthologous to human TPRKB (TP53RK binding protein); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; cobalt dichloride.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Cgi-121; EKC/KEOPS complex subunit Tprkb; LOC100910911; LOC103690067; LOC297411; Prpk (p53-related protein kinase)-binding protein; RGD1309786; similar to CGI-121 protein; TP53RK-binding protein; TP53RK-binding protein-like
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84119,900,374 - 119,915,374 (+)NCBIGRCr8
mRatBN7.24118,342,910 - 118,357,908 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4118,342,945 - 118,357,901 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4123,817,006 - 123,830,492 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04119,591,750 - 119,605,236 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04118,211,443 - 118,224,929 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04117,589,527 - 117,604,481 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4117,780,533 - 117,785,941 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl4117,589,591 - 117,603,155 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04182,345,035 - 182,359,990 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44120,066,138 - 120,079,624 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14120,315,812 - 120,324,100 (+)NCBI
Celera4107,316,394 - 107,329,878 (+)NCBICelera
Cytogenetic Map4q34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (ISO,ISS)
cytosol  (IBA,IEA,ISO)
EKC/KEOPS complex  (IBA,IEA,ISO,ISS)
nucleus  (IBA,IEA,ISO,ISS)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:12659830   PMID:15489334   PMID:27903914   PMID:28805828  


Genomics

Comparative Map Data
Tprkb
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84119,900,374 - 119,915,374 (+)NCBIGRCr8
mRatBN7.24118,342,910 - 118,357,908 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4118,342,945 - 118,357,901 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4123,817,006 - 123,830,492 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04119,591,750 - 119,605,236 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04118,211,443 - 118,224,929 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04117,589,527 - 117,604,481 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4117,780,533 - 117,785,941 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl4117,589,591 - 117,603,155 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04182,345,035 - 182,359,990 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44120,066,138 - 120,079,624 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14120,315,812 - 120,324,100 (+)NCBI
Celera4107,316,394 - 107,329,878 (+)NCBICelera
Cytogenetic Map4q34NCBI
TPRKB
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38273,729,873 - 73,737,345 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl273,729,104 - 73,737,400 (-)EnsemblGRCh38hg38GRCh38
GRCh37273,957,000 - 73,964,472 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36273,810,509 - 73,818,021 (-)NCBINCBI36Build 36hg18NCBI36
Celera273,807,816 - 73,815,378 (-)NCBICelera
Cytogenetic Map2p13.1NCBI
HuRef273,691,923 - 73,699,485 (-)NCBIHuRef
CHM1_1273,887,711 - 73,895,270 (-)NCBICHM1_1
T2T-CHM13v2.0273,742,992 - 73,750,466 (-)NCBIT2T-CHM13v2.0
Tprkb
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39685,888,842 - 85,907,266 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl685,888,847 - 85,907,266 (+)EnsemblGRCm39 Ensembl
GRCm38685,911,860 - 85,930,284 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl685,911,865 - 85,930,284 (+)EnsemblGRCm38mm10GRCm38
MGSCv37685,865,713 - 85,880,278 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36685,881,391 - 85,895,916 (+)NCBIMGSCv36mm8
Celera687,850,066 - 87,864,628 (+)NCBICelera
Cytogenetic Map6C3NCBI
cM Map637.53NCBI
Tprkb
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542411,961,994 - 11,969,610 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542411,961,994 - 11,969,610 (-)NCBIChiLan1.0ChiLan1.0
TPRKB
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21252,628,617 - 52,642,027 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A52,634,551 - 52,644,779 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A73,791,353 - 73,801,570 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A75,326,512 - 75,334,293 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A75,326,512 - 75,334,271 (-)Ensemblpanpan1.1panPan2
TPRKB
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11749,271,845 - 49,278,794 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1749,245,496 - 49,278,767 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1748,915,787 - 48,922,753 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01750,134,238 - 50,141,211 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1750,134,333 - 50,141,159 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11749,150,408 - 49,157,381 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01749,217,775 - 49,224,740 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01749,776,764 - 49,783,740 (+)NCBIUU_Cfam_GSD_1.0
Tprkb
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629211,070,697 - 11,077,667 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649117,493,285 - 17,500,523 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649117,493,630 - 17,500,779 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TPRKB
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl369,236,351 - 69,243,914 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1369,235,111 - 69,243,709 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2372,437,613 - 72,445,206 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TPRKB
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11433,518,089 - 33,526,122 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1433,521,398 - 33,527,613 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604578,574,105 - 78,585,601 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in Tprkb
64 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:242
Count of miRNA genes:137
Interacting mature miRNAs:143
Transcripts:ENSRNOT00000021211, ENSRNOT00000074924
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2303168Bp330Blood pressure QTL 3304.250.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)45214602146446691Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)411320076180699135Rat
1358352Srcrt3Stress Responsive Cort QTL 32.29blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)438465774146803430Rat
1576305Emca6Estrogen-induced mammary cancer QTL 65.8mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)444463720155883716Rat
1354612Foco1Food consumption QTL 18.87eating behavior trait (VT:0001431)food intake rate (CMO:0000427)444463908148090542Rat
1354660Salc1Saline consumption QTL 111.26drinking behavior trait (VT:0001422)saline drink intake rate (CMO:0001627)444463908148090542Rat
2312567Glom19Glomerulus QTL 191.90.006kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)445456990146803430Rat
1298082Stresp4Stress response QTL 4blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)450119848146803430Rat
70200Alc18Alcohol consumption QTL 189.2drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)456647873149491524Rat
1641833Alc21Alcohol consumption QTL 218.60.0001drinking behavior trait (VT:0001422)ethanol drink intake rate (CMO:0001407)456698790126192555Rat
738009Sach4Saccharine consumption QTL 44.90.000016consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)459948935154902892Rat
738016Alc16Alcohol consumption QTL 163.60.00015consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)459948935154902892Rat
738031Alc14Alcohol consumption QTL 147.60.00003consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)459948935154902892Rat
61418Pia5Pristane induced arthritis QTL 54.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)462277855128289560Rat
631674Iddm14Insulin dependent diabetes mellitus QTL 14blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)464528739157573521Rat
61330Eau1Experimental allergic uveoretinitis QTL 10.0003uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)470362013132642728Rat
631646Stl4Serum triglyceride level QTL 46.50.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)473169846132642728Rat
724522Bp146Blood pressure QTL 1462.20.0021arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)473630210118630210Rat
2302051Pia28Pristane induced arthritis QTL 285.30.001blood autoantibody amount (VT:0003725)serum immunoglobulin G-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002112)473630210118630210Rat
631662Hcar2Hepatocarcinoma resistance QTL 23.10.0003liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)478878504123878504Rat
738015Pia9Pristane induced arthritis QTL 94.50.048joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)480694870125694870Rat
2306899Bp338Blood pressure QTL 3380.071arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)481006124120102625Rat
1641919Alc22Alcohol consumption QTL 220.0005drinking behavior trait (VT:0001422)ethanol drink intake rate (CMO:0001407)481192555126192555Rat
70177Xhs1X-ray hypersensitivity QTL 125.1intestine integrity trait (VT:0010554)post-insult time to onset of moribundity (CMO:0001896)482798864152731274Rat
1576316Ept5Estrogen-induced pituitary tumorigenesis QTL 53.8pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)483428419177635233Rat
634334Xhs3X-ray hypersensitivity QTL 310intestine integrity trait (VT:0010554)post-insult time to onset of moribundity (CMO:0001896)484728680129854654Rat
1582232Gluco25Glucose level QTL 253.60.0023blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)485253748148090731Rat
12798523Anxrr56Anxiety related response QTL 562.830.05locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)485253748150276390Rat
1358202Gluco11Glucose level QTL 112.40.02adipocyte glucose uptake trait (VT:0004185)absolute change in adipocyte glucose uptake (CMO:0000873)485379421167139601Rat
61476Aia3Adjuvant induced arthritis QTL 33.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)486730991131730991Rat
1578662Bss15Bone structure and strength QTL 1519.6femur width (VT:1000666)femoral neck width (CMO:0001695)487327165132327165Rat
1578670Bss14Bone structure and strength QTL 1416.4femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)487327165132327165Rat
1578655Bmd11Bone mineral density QTL 1111femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)490850165135850165Rat
634335Anxrr16Anxiety related response QTL 167.22locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)493308457167139447Rat
631689Scl4Serum cholesterol level QTL 41.90.008blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)495174120140174120Rat
61434Cia3Collagen induced arthritis QTL 34.8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4103194656148194656Rat
2302049Pia32Pristane induced arthritis QTL 325.10.001blood autoantibody amount (VT:0003725)serum immunoglobulin G-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002112)4105789505150789505Rat
731165Uae21Urinary albumin excretion QTL 212.40.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)4106649412151649412Rat
61406Scwia1Streptococcal cell wall induced arthritis QTL 12.3joint integrity trait (VT:0010548)experimental arthritis severity measurement (CMO:0001459)4106805662151805662Rat
7207480Bss105Bone structure and strength QTL 1058.1femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)4109827074154827074Rat
1549832Bss3Bone structure and strength QTL 311femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)4109827074154827074Rat
737821Hcar9Hepatocarcinoma resistance QTL 93.7liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)4109866907167139601Rat
1331759Hrtrt13Heart rate QTL 133.54628heart pumping trait (VT:2000009)heart rate (CMO:0000002)4110275411168266883Rat
6478760Anxrr45Anxiety related response QTL 450.06717locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4110870972155870972Rat
6478763Anxrr46Anxiety related response QTL 460.07428locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4110870972155870972Rat
12798519Anxrr54Anxiety related response QTL 542.540.05locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4114627026159627026Rat
1300116Hrtrt5Heart rate QTL 53.76heart pumping trait (VT:2000009)heart rate (CMO:0000002)4116179486151161268Rat

Markers in Region
RH131550  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24118,341,589 - 118,341,798 (+)MAPPERmRatBN7.2
Rnor_6.04117,771,144 - 117,771,352NCBIRnor6.0
Rnor_6.04117,588,161 - 117,588,369NCBIRnor6.0
Rnor_5.04182,343,669 - 182,343,877UniSTSRnor5.0
Rnor_5.04182,162,675 - 182,162,883UniSTSRnor5.0
RGSC_v3.44120,064,693 - 120,064,901UniSTSRGSC3.4
Celera4107,314,949 - 107,315,157UniSTS
RH 3.4 Map4694.3UniSTS
Cytogenetic Map4q34UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 1 37 24 23 1
Low 3 43 57 41 18 41 8 11 37 11 18 10 8
Below cutoff 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001013926 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_003749789 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006236743 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006236746 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006236805 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006236808 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592552 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592553 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592554 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593013 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107356 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107357 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107359 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107360 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063285808 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063285809 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063285810 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC095078 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC087060 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473957 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CK475733 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CV112449 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ231666 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ234910 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000021211   ⟹   ENSRNOP00000021211
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4118,343,010 - 118,357,901 (+)Ensembl
Rnor_6.0 Ensembl4117,780,533 - 117,785,941 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000074924   ⟹   ENSRNOP00000066993
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4118,342,945 - 118,354,005 (+)Ensembl
Rnor_6.0 Ensembl4117,594,805 - 117,603,155 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000078239   ⟹   ENSRNOP00000074558
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4118,343,020 - 118,356,316 (+)Ensembl
Rnor_6.0 Ensembl4117,589,591 - 117,602,887 (+)Ensembl
RefSeq Acc Id: NM_001013926   ⟹   NP_001013948
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84119,900,499 - 119,913,984 (+)NCBI
mRatBN7.24118,343,035 - 118,356,520 (+)NCBI
Rnor_6.04117,589,606 - 117,603,091 (+)NCBI
Rnor_5.04182,345,035 - 182,359,990 (+)NCBI
RGSC_v3.44120,066,138 - 120,079,624 (+)RGD
Celera4107,316,394 - 107,329,878 (+)RGD
Sequence:
RefSeq Acc Id: XM_006236743   ⟹   XP_006236805
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84119,900,411 - 119,915,374 (+)NCBI
mRatBN7.24118,342,947 - 118,356,890 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006236746   ⟹   XP_006236808
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84119,900,383 - 119,915,374 (+)NCBI
mRatBN7.24118,342,919 - 118,356,890 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017593013   ⟹   XP_017448502
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84119,900,397 - 119,915,374 (+)NCBI
mRatBN7.24118,343,025 - 118,357,908 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039107356   ⟹   XP_038963284
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84119,903,256 - 119,915,374 (+)NCBI
mRatBN7.24118,345,736 - 118,357,908 (+)NCBI
RefSeq Acc Id: XM_039107357   ⟹   XP_038963285
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84119,903,256 - 119,915,374 (+)NCBI
mRatBN7.24118,345,735 - 118,357,908 (+)NCBI
RefSeq Acc Id: XM_039107359   ⟹   XP_038963287
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84119,904,772 - 119,915,374 (+)NCBI
mRatBN7.24118,342,995 - 118,357,908 (+)NCBI
RefSeq Acc Id: XM_039107360   ⟹   XP_038963288
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84119,900,374 - 119,915,374 (+)NCBI
mRatBN7.24118,342,910 - 118,356,890 (+)NCBI
RefSeq Acc Id: XM_063285808   ⟹   XP_063141878
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84119,900,391 - 119,915,374 (+)NCBI
RefSeq Acc Id: XM_063285809   ⟹   XP_063141879
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84119,900,392 - 119,915,374 (+)NCBI
RefSeq Acc Id: XM_063285810   ⟹   XP_063141880
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84119,900,391 - 119,915,374 (+)NCBI
RefSeq Acc Id: NP_001013948   ⟸   NM_001013926
- UniProtKB: Q5PQR8 (UniProtKB/Swiss-Prot),   G3V805 (UniProtKB/TrEMBL),   A6IAU0 (UniProtKB/TrEMBL),   A6IAU1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_038963288   ⟸   XM_039107360
- Peptide Label: isoform X1
- UniProtKB: Q5PQR8 (UniProtKB/Swiss-Prot),   G3V805 (UniProtKB/TrEMBL),   A6IAU0 (UniProtKB/TrEMBL),   A6IAU1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_006236808   ⟸   XM_006236746
- Peptide Label: isoform X1
- UniProtKB: Q5PQR8 (UniProtKB/Swiss-Prot),   G3V805 (UniProtKB/TrEMBL),   A6IAU0 (UniProtKB/TrEMBL),   A6IAU1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006236805   ⟸   XM_006236743
- Peptide Label: isoform X1
- UniProtKB: Q5PQR8 (UniProtKB/Swiss-Prot),   G3V805 (UniProtKB/TrEMBL),   A6IAU0 (UniProtKB/TrEMBL),   A6IAU1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_038963287   ⟸   XM_039107359
- Peptide Label: isoform X1
- UniProtKB: Q5PQR8 (UniProtKB/Swiss-Prot),   G3V805 (UniProtKB/TrEMBL),   A6IAU0 (UniProtKB/TrEMBL),   A6IAU1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_017448502   ⟸   XM_017593013
- Peptide Label: isoform X1
- UniProtKB: Q5PQR8 (UniProtKB/Swiss-Prot),   G3V805 (UniProtKB/TrEMBL),   A6IAU0 (UniProtKB/TrEMBL),   A6IAU1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_038963285   ⟸   XM_039107357
- Peptide Label: isoform X1
- UniProtKB: Q5PQR8 (UniProtKB/Swiss-Prot),   G3V805 (UniProtKB/TrEMBL),   A6IAU0 (UniProtKB/TrEMBL),   A6IAU1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038963284   ⟸   XM_039107356
- Peptide Label: isoform X1
- UniProtKB: Q5PQR8 (UniProtKB/Swiss-Prot),   G3V805 (UniProtKB/TrEMBL),   A6IAU0 (UniProtKB/TrEMBL),   A6IAU1 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000021211   ⟸   ENSRNOT00000021211
RefSeq Acc Id: ENSRNOP00000066993   ⟸   ENSRNOT00000074924
RefSeq Acc Id: ENSRNOP00000074558   ⟸   ENSRNOT00000078239
RefSeq Acc Id: XP_063141878   ⟸   XM_063285808
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063141880   ⟸   XM_063285810
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063141879   ⟸   XM_063285809
- Peptide Label: isoform X1

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5PQR8-F1-model_v2 AlphaFold Q5PQR8 1-158 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1309786 AgrOrtholog
BioCyc Gene G2FUF-43923 BioCyc
Ensembl Genes ENSRNOG00000015818 Ensembl
  ENSRNOG00000050645 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOG00055012652 UniProtKB/Swiss-Prot
  ENSRNOG00060026366 UniProtKB/Swiss-Prot
  ENSRNOG00065017065 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000021211.7 UniProtKB/TrEMBL
  ENSRNOT00000074924.3 UniProtKB/TrEMBL
  ENSRNOT00000078239.2 UniProtKB/Swiss-Prot
  ENSRNOT00055021598 UniProtKB/Swiss-Prot
  ENSRNOT00060045672 UniProtKB/Swiss-Prot
  ENSRNOT00065028492 UniProtKB/Swiss-Prot
Gene3D-CATH 3.30.2380.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7125830 IMAGE-MGC_LOAD
InterPro CGI121/TPRKB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CGI121/TPRKB_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:297411 UniProtKB/TrEMBL
MGC_CLONE MGC:94108 IMAGE-MGC_LOAD
NCBI Gene 297411 ENTREZGENE
PANTHER EKC/KEOPS COMPLEX SUBUNIT TPRKB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR15840 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam CGI-121 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Tprkb PhenoGen
RatGTEx ENSRNOG00000015818 RatGTEx
  ENSRNOG00000050645 RatGTEx
  ENSRNOG00055012652 RatGTEx
  ENSRNOG00060026366 RatGTEx
  ENSRNOG00065017065 RatGTEx
Superfamily-SCOP SSF143870 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A6IAU0 ENTREZGENE, UniProtKB/TrEMBL
  A6IAU1 ENTREZGENE, UniProtKB/TrEMBL
  A6IAU3_RAT UniProtKB/TrEMBL
  G3V805 ENTREZGENE, UniProtKB/TrEMBL
  M0RBP8_RAT UniProtKB/TrEMBL
  Q5PQR8 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Tprkb  Tp53rk binding protein  LOC103690067  EKC/KEOPS complex subunit Tprkb  Data merged from RGD:9395731 737654 PROVISIONAL
2015-07-29 Tprkb  Tp53rk binding protein  LOC100910911  TP53RK-binding protein-like  Data merged from RGD:6495877 737654 PROVISIONAL
2014-08-25 LOC103690067  EKC/KEOPS complex subunit Tprkb      Symbol and Name status set to provisional 70820 PROVISIONAL
2012-07-05 LOC100910911  TP53RK-binding protein-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-03-30 Tprkb  Tp53rk binding protein  RGD1309786  similar to CGI-121 protein  Symbol and Name updated 1299863 APPROVED
2005-12-06 RGD1309786  similar to CGI-121 protein  RGD1309786_predicted  similar to CGI-121 protein (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-20 RGD1309786_predicted  similar to CGI-121 protein (predicted)  LOC297411_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC297411_predicted  similar to CGI-121 protein (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL