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ONTOLOGY REPORT - ANNOTATIONS

Term:nucleus organization
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Accession:GO:0006997 term browser browse the term
Definition:A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the nucleus.
Synonyms:exact_synonym: nuclear organisation;   nuclear organization
 related_synonym: nuclear morphology;   nuclear organization and biogenesis;   nucleus organization and biogenesis
 alt_id: GO:0048287


show annotations for term's descendants           Sort by:
nucleus organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bin1 bridging integrator 1 involved_in IEA
ISO		 GO_REF:0000107
(PMID:26506308)		 Ensembl
RGD		 PMID:26506308 GO_REF:0000107 NCBI chr18:24,009,731...24,067,267
Ensembl chr18:24,009,653...24,067,263 		JBrowse link
G Cep55 centrosomal protein 55 NOT|involved_in ISO (PMID:20616062) RGD PMID:20616062 NCBI chr 1:235,832,823...235,848,401
Ensembl chr 1:235,832,878...235,848,394 		JBrowse link
G Chek1 checkpoint kinase 1 acts_upstream_of_or_within ISO MGI:1928818 (PMID:10859163) RGD PMID:10859163 NCBI chr 8:36,420,565...36,443,477
Ensembl chr 8:36,420,569...36,441,009 		JBrowse link
G Chmp1a charged multivesicular body protein 1A involved_in ISO (PMID:20616062) RGD PMID:20616062 NCBI chr19:51,238,153...51,246,433
Ensembl chr19:51,238,160...51,246,436 		JBrowse link
G Chmp1b charged multivesicular body protein 1B involved_in ISO (PMID:20616062) RGD PMID:20616062 NCBI chr18:60,740,349...60,742,879 JBrowse link
G Chmp2a charged multivesicular body protein 2A involved_in ISO (PMID:20616062) RGD PMID:20616062 NCBI chr 1:73,660,045...73,662,894
Ensembl chr 1:73,660,046...73,662,452 		JBrowse link
G Chmp2b charged multivesicular body protein 2B involved_in ISO (PMID:20616062) RGD PMID:20616062 NCBI chr11:3,337,478...3,364,015
Ensembl chr11:3,337,494...3,385,181 		JBrowse link
G Chmp3 charged multivesicular body protein 3 NOT|involved_in ISO (PMID:20616062) RGD PMID:20616062 NCBI chr 4:103,576,453...103,622,566
Ensembl chr 4:103,576,515...103,623,959 		JBrowse link
G Chmp4b charged multivesicular body protein 4B involved_in ISO (PMID:20616062) RGD PMID:20616062 NCBI chr 3:143,170,859...143,211,376
Ensembl chr 3:143,170,902...143,210,844 		JBrowse link
G Chmp4c charged multivesicular body protein 4C involved_in ISO (PMID:20616062) RGD PMID:20616062 NCBI chr 2:91,391,729...91,428,652
Ensembl chr 2:91,388,530...91,428,668 		JBrowse link
G Chmp5 charged multivesicular body protein 5 involved_in ISO (PMID:20616062) RGD PMID:20616062 NCBI chr 5:56,081,385...56,098,529
Ensembl chr 5:56,081,343...56,098,529 		JBrowse link
G Chmp6 charged multivesicular body protein 6 involved_in ISO (PMID:20616062) RGD PMID:20616062 NCBI chr10:105,191,972...105,197,642
Ensembl chr10:105,191,950...105,197,640 		JBrowse link
G Chmp7 charged multivesicular body protein 7 involved_in ISO (PMID:20616062) RGD PMID:20616062 NCBI chr15:44,790,983...44,806,216
Ensembl chr15:44,790,996...44,806,216 		JBrowse link
G Golm1 golgi membrane protein 1 acts_upstream_of_or_within ISO MGI:4124004 (PMID:18830387) RGD PMID:18830387 NCBI chr17:4,995,925...5,044,329
Ensembl chr17:4,996,104...5,034,057 		JBrowse link
G H3f3b H3.3 histone B acts_upstream_of_or_within ISO MGI:5474462 (PMID:23570311) RGD PMID:23570311 NCBI chr10:101,256,484...101,258,716
Ensembl chr10:101,256,480...101,258,709 		JBrowse link
G Irag2 inositol 1,4,5-triphosphate receptor associated 2 involved_in ISO (MGI:6415450|PMID:29878215) RGD PMID:29878215 MGI:6415450 NCBI chr 4:178,088,902...178,143,569
Ensembl chr 4:178,088,507...178,143,557 		JBrowse link
G Lemd3 LEM domain containing 3 acts_upstream_of_or_within ISO MGI:3703328 (PMID:16943282) RGD PMID:16943282 NCBI chr 7:56,415,053...56,499,047
Ensembl chr 7:56,305,448...56,502,474 		JBrowse link
G Lmna lamin A/C acts_upstream_of_or_within ISO MGI:1890508|MGI:2177930 (PMID:14755333), (PMID:16511604) RGD PMID:14755333 PMID:16511604 NCBI chr 2:173,939,751...173,960,423
Ensembl chr 2:173,939,751...173,960,423 		JBrowse link
G Map7 microtubule-associated protein 7 acts_upstream_of_or_within ISO MGI:2148221 (PMID:10837026) RGD PMID:10837026 NCBI chr 1:14,910,433...15,037,574
Ensembl chr 1:14,910,551...15,037,574 		JBrowse link
G Pdcd6ip programmed cell death 6 interacting protein NOT|involved_in ISO (PMID:20616062) RGD PMID:20616062 NCBI chr 8:113,590,998...113,646,795
Ensembl chr 8:113,590,998...113,646,773 		JBrowse link
G Plec plectin involved_in IEA
ISO		 GO_REF:0000107
MGI:3799315 (PMID:26487297)		 Ensembl
RGD		 PMID:26487297 GO_REF:0000107 NCBI chr 7:107,887,764...107,949,100
Ensembl chr 7:107,887,764...107,945,467 		JBrowse link
G Prm1 protamine 1 acts_upstream_of_or_within ISO MGI:3039794 (PMID:11326282) RGD PMID:11326282 NCBI chr10:4,871,817...4,872,312 JBrowse link
G Prm2 protamine 2 involved_in
acts_upstream_of_or_within		 IBA
ISO		 GO_REF:0000033
MGI:3039800 (PMID:11326282)		 GO_Central
RGD		 PMID:11326282 GO_REF:0000033 NCBI chr10:4,876,285...4,877,026
Ensembl chr10:4,873,372...4,877,026 		JBrowse link
G Syne2 spectrin repeat containing nuclear envelope protein 2 involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 NCBI chr 6:94,537,088...94,848,085
Ensembl chr 6:94,537,088...94,848,064 		JBrowse link
G Vps4a vacuolar protein sorting 4 homolog A involved_in ISO
IEA		 (PMID:20616062)
GO_REF:0000107		 RGD
Ensembl		 PMID:20616062 GO_REF:0000107 NCBI chr19:34,934,999...34,948,888
Ensembl chr19:34,934,961...34,948,887 		JBrowse link
G Vps4b vacuolar protein sorting 4 homolog B involved_in ISO (PMID:20616062) RGD PMID:20616062 NCBI chr13:22,907,105...22,932,200
Ensembl chr13:22,907,109...22,932,229 		JBrowse link
G Wdr73 WD repeat domain 73 involved_in ISO (PMID:25466283) RGD PMID:25466283 NCBI chr 1:134,860,329...134,868,475
Ensembl chr 1:134,860,180...134,868,479 		JBrowse link
G Zmpste24 zinc metallopeptidase STE24 acts_upstream_of_or_within ISO MGI:2180033|MGI:96794 (PMID:11923874), (PMID:16079796), (PMID:16511604) RGD PMID:11923874 PMID:16079796 PMID:16511604 NCBI chr 5:134,627,218...134,660,360
Ensembl chr 5:134,627,229...134,660,110 		JBrowse link
Cajal body organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Uspl1 ubiquitin specific peptidase like 1 involved_in ISO
IBA		 (PMID:22878415)
GO_REF:0000033		 RGD
GO_Central		 PMID:22878415 GO_REF:0000033 NCBI chr12:5,823,460...5,850,470
Ensembl chr12:5,823,359...5,850,366 		JBrowse link
G Vrk1 VRK serine/threonine kinase 1 involved_in ISO (PMID:31090908) RGD PMID:31090908 NCBI chr 6:124,914,770...124,981,508
Ensembl chr 6:124,914,855...124,981,436 		JBrowse link
G Wrap53 WD repeat containing, antisense to TP53 involved_in ISO
IBA
ISS		 (PMID:21072240)
GO_REF:0000033
GO_REF:0000024		 RGD
GO_Central
UniProt		 PMID:21072240 GO_REF:0000024 GO_REF:0000033 NCBI chr10:54,282,092...54,299,908
Ensembl chr10:54,282,105...54,298,929 		JBrowse link
G Zpr1 ZPR1 zinc finger involved_in ISO
IBA		 (MGI:3575865|PMID:15767679)
GO_REF:0000033		 RGD
GO_Central		 PMID:15767679 GO_REF:0000033 MGI:3575865 NCBI chr 8:46,564,898...46,574,719
Ensembl chr 8:46,565,146...46,574,719 		JBrowse link
female pronucleus assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Wee2 WEE2 oocyte meiosis inhibiting kinase involved_in ISO (MGI:4948986|PMID:21454751) RGD PMID:21454751 MGI:4948986 NCBI chr 4:69,239,043...69,261,576
Ensembl chr 4:69,239,299...69,261,093 		JBrowse link
mitotic nuclear membrane disassembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdk1 cyclin-dependent kinase 1 involved_in IEA
ISO		 GO_REF:0000107
(PMID:2188730)		 Ensembl
RGD		 PMID:2188730 GO_REF:0000107 NCBI chr20:19,266,226...19,281,417
Ensembl chr20:19,266,248...19,281,408 		JBrowse link
mitotic nuclear membrane reassembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ankle2 ankyrin repeat and LEM domain containing 2 involved_in ISO
IEA
ISS		 (PMID:22770216)
GO_REF:0000107
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:22770216 GO_REF:0000024 GO_REF:0000107 NCBI chr12:46,418,142...46,451,304
Ensembl chr12:46,417,759...46,500,514 		JBrowse link
G Banf1 BAF nuclear assembly factor 1 involved_in ISO
ISS		 (PMID:28841419)
GO_REF:0000024		 RGD
UniProt		 PMID:28841419 GO_REF:0000024 NCBI chr 1:202,672,170...202,674,215
Ensembl chr 1:202,671,305...202,674,188 		JBrowse link
G Brox BRO1 domain and CAAX motif containing involved_in ISS
ISO		 GO_REF:0000024
(PMID:34818527)		 UniProt
RGD		 PMID:34818527 GO_REF:0000024 NCBI chr13:94,920,107...94,940,189
Ensembl chr13:94,920,112...94,940,227 		JBrowse link
G Reep3 receptor accessory protein 3 involved_in ISO (PMID:23911198) RGD PMID:23911198 NCBI chr20:21,493,868...21,578,698
Ensembl chr20:21,493,954...21,578,697 		JBrowse link
G Reep4 receptor accessory protein 4 involved_in ISO
ISS		 (PMID:23911198)
GO_REF:0000024		 RGD
UniProt		 PMID:23911198 GO_REF:0000024 NCBI chr15:45,620,317...45,623,524
Ensembl chr15:45,619,941...45,623,526 		JBrowse link
negative regulation of rDNA heterochromatin formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Phf2 PHD finger protein 2 involved_in ISO (PMID:20129925) RGD PMID:20129925 NCBI chr17:15,783,221...15,851,209
Ensembl chr17:15,781,864...15,851,208 		JBrowse link
G Phf8 PHD finger protein 8 involved_in ISO (PMID:20208542) RGD PMID:20208542 NCBI chr  X:20,524,103...20,623,459
Ensembl chr  X:20,524,558...20,623,410 		JBrowse link
nuclear body organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdkn2a cyclin-dependent kinase inhibitor 2A involved_in ISO (PMID:10360174) RGD PMID:10360174 NCBI chr 5:103,984,949...103,992,143
Ensembl chr 5:103,984,949...104,003,149 		JBrowse link
G Celf3 CUGBP, Elav-like family member 3 acts_upstream_of_or_within ISO (PMID:25145264) RGD PMID:25145264 NCBI chr 2:182,116,034...182,130,163
Ensembl chr 2:182,116,073...182,130,163 		JBrowse link
G Sf1 splicing factor 1 acts_upstream_of_or_within ISO (PMID:25145264) RGD PMID:25145264 NCBI chr 1:203,670,016...203,683,432
Ensembl chr 1:203,670,018...203,684,330 		JBrowse link
nuclear envelope organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctdnep1 CTD nuclear envelope phosphatase 1 involved_in ISO
IEA
ISS		 (PMID:17420445)
GO_REF:0000107
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:17420445 GO_REF:0000024 GO_REF:0000107 NCBI chr10:54,704,367...54,713,781
Ensembl chr10:54,704,148...54,713,781 		JBrowse link
G Des desmin involved_in ISS
ISO		 GO_REF:0000024
(MGI:7494390|PMID:35959657)		 UniProt
RGD		 PMID:35959657 GO_REF:0000024 MGI:7494390 NCBI chr 9:76,850,979...76,858,695
Ensembl chr 9:76,850,982...76,858,699 		JBrowse link
G Dmpk DM1 protein kinase involved_in ISO
IBA		 (PMID:21949239)
GO_REF:0000033
(MGI:5298442|PMID:21949239)		 RGD
GO_Central		 PMID:21949239 GO_REF:0000033 MGI:5298442 NCBI chr 1:78,730,255...78,740,585
Ensembl chr 1:78,730,275...78,740,593 		JBrowse link
G Efcc1 EF-hand and coiled-coil domain containing 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:120,188,202...120,223,464
Ensembl chr 4:120,188,470...120,217,516 		JBrowse link
G Lemd2 LEM domain nuclear envelope protein 2 involved_in ISO (PMID:17097643) RGD PMID:17097643 NCBI chr20:5,282,397...5,296,621
Ensembl chr20:5,282,397...5,296,626 		JBrowse link
G Lemd3 LEM domain containing 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:56,415,053...56,499,047
Ensembl chr 7:56,305,448...56,502,474 		JBrowse link
G Lmna lamin A/C involved_in
acts_upstream_of_or_within		 IEA
ISO
IBA
ISS		 GO_REF:0000107
MGI:1890508 (PMID:15608054)
(PMID:2188730), (PMID:24741066), (PMID:37788673), (PMID:37832547)
GO_REF:0000118
GO_REF:0000033
GO_REF:0000024
(PMID:27534416)		 Ensembl
RGD
TreeGrafter
GO_Central
UniProt		 PMID:2188730 PMID:15608054 PMID:24741066 PMID:27534416 PMID:37788673 More... GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr 2:173,939,751...173,960,423
Ensembl chr 2:173,939,751...173,960,423 		JBrowse link
G Lmnb1 lamin B1 involved_in ISO
IBA
IEA
ISS		 (PMID:32910914)
GO_REF:0000033
GO_REF:0000118
GO_REF:0000024
GO_REF:0000107		 RGD
GO_Central
TreeGrafter
UniProt
Ensembl		 PMID:32910914 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr18:50,175,861...50,215,210
Ensembl chr18:50,175,874...50,214,502 		JBrowse link
G Lmnb2 lamin B2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:8,792,628...8,808,665
Ensembl chr 7:8,789,314...8,808,665 		JBrowse link
G Nup155 nucleoporin 155 acts_upstream_of_or_within ISO (PMID:19070573) RGD PMID:19070573 NCBI chr 2:57,201,310...57,252,918
Ensembl chr 2:57,201,272...57,254,148 		JBrowse link
G Nup93 nucleoporin 93 involved_in ISO
IEA
ISS		 (PMID:26878725)
GO_REF:0000107
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:26878725 GO_REF:0000024 GO_REF:0000107 NCBI chr19:10,684,214...10,788,009
Ensembl chr19:10,682,075...10,788,026 		JBrowse link
G Parp11 poly (ADP-ribose) polymerase family, member 11 acts_upstream_of_or_within ISO MGI:4415414 (PMID:25673562) RGD PMID:25673562 NCBI chr 4:160,298,040...160,344,369
Ensembl chr 4:160,304,905...160,341,946 		JBrowse link
G Reep3 receptor accessory protein 3 involved_in ISO (PMID:23911198) RGD PMID:23911198 NCBI chr20:21,493,868...21,578,698
Ensembl chr20:21,493,954...21,578,697 		JBrowse link
G Reep4 receptor accessory protein 4 involved_in ISO
ISS		 (PMID:23911198)
GO_REF:0000024		 RGD
UniProt		 PMID:23911198 GO_REF:0000024 NCBI chr15:45,620,317...45,623,524
Ensembl chr15:45,619,941...45,623,526 		JBrowse link
G Tmem170a transmembrane protein 170A involved_in ISO (PMID:26906412) RGD PMID:26906412 NCBI chr19:39,833,947...39,846,807
Ensembl chr19:39,833,980...39,846,783 		JBrowse link
G Tmem201 transmembrane protein 201 involved_in ISO (PMID:21610090) RGD PMID:21610090 NCBI chr 5:160,166,240...160,188,874
Ensembl chr 5:160,166,427...160,188,843 		JBrowse link
G Tor1a torsin family 1, member A involved_in
acts_upstream_of_or_within		 ISS
ISO		 GO_REF:0000024
MGI:3623421|MGI:3623422 (PMID:16364897)		 UniProt
RGD		 PMID:16364897 GO_REF:0000024 NCBI chr 3:14,250,667...14,257,704
Ensembl chr 3:14,250,676...14,257,691 		JBrowse link
G Zmpste24 zinc metallopeptidase STE24 involved_in
acts_upstream_of_or_within		 ISO (MGI:2388414|PMID:12235369), (MGI:3719516|PMID:17652517), (MGI:5796042|PMID:27462105)
MGI:2158363|MGI:2180033|MGI:96794 (PMID:11923874), (PMID:15608054), (PMID:20961378)		 RGD PMID:11923874 PMID:12235369 PMID:15608054 PMID:17652517 PMID:20961378 More... MGI:2388414 MGI:3719516 MGI:5796042 NCBI chr 5:134,627,218...134,660,360
Ensembl chr 5:134,627,229...134,660,110 		JBrowse link
nuclear fragmentation involved in apoptotic nuclear change term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gper1 G protein-coupled estrogen receptor 1 involved_in IDA PMID:23907461 UniProt PMID:23907461 RGD:8553942 NCBI chr12:15,217,217...15,222,679
Ensembl chr12:15,217,442...15,221,889 		JBrowse link
nuclear inner membrane organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tardbp TAR DNA binding protein involved_in ISO (PMID:18305152) RGD PMID:18305152 NCBI chr 5:159,050,518...159,062,218
Ensembl chr 5:159,051,799...159,062,055 		JBrowse link
nuclear matrix anchoring at nuclear membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sun1 Sad1 and UNC84 domain containing 1 involved_in ISO (PMID:18396275) RGD PMID:18396275 NCBI chr12:15,396,378...15,441,277
Ensembl chr12:15,396,381...15,441,571 		JBrowse link
G Sun2 Sad1 and UNC84 domain containing 2 involved_in ISO (PMID:19933576) RGD PMID:19933576 NCBI chr 7:111,275,374...111,292,565
Ensembl chr 7:111,275,380...111,292,553 		JBrowse link
G Syne1 spectrin repeat containing nuclear envelope protein 1 involved_in ISO (PMID:11801724) RGD PMID:11801724 NCBI chr 1:41,512,146...41,983,382
Ensembl chr 1:41,512,030...41,983,322 		JBrowse link
nuclear matrix organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tpr translocated promoter region, nuclear basket protein NOT|involved_in ISO
ISS		 (PMID:11952838)
GO_REF:0000024		 RGD
UniProt		 PMID:11952838 GO_REF:0000024 NCBI chr13:62,424,312...62,487,502
Ensembl chr13:62,424,312...62,487,496 		JBrowse link
nuclear membrane disassembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akap8l A-kinase anchoring protein 8 like involved_in ISO (PMID:11034899) RGD PMID:11034899 NCBI chr 7:11,332,671...11,362,287
Ensembl chr 7:11,332,672...11,362,275 		JBrowse link
G Atr ATR serine/threonine kinase acts_upstream_of ISO (PMID:37788673), (PMID:37832547) RGD PMID:37788673 PMID:37832547 NCBI chr 8:96,426,704...96,524,152
Ensembl chr 8:96,426,724...96,524,136 		JBrowse link
G Dctn1 dynactin subunit 1 involved_in ISO
IEA
ISS		 (PMID:20679239)
GO_REF:0000107
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:20679239 GO_REF:0000024 GO_REF:0000107 NCBI chr 4:115,671,024...115,703,824
Ensembl chr 4:115,661,638...115,703,815 		JBrowse link
G Ndel1 nudE neurodevelopment protein 1-like 1 acts_upstream_of_or_within IDA PMID:18809722 MGI PMID:18809722 RGD:8554736 NCBI chr10:53,505,628...53,582,025
Ensembl chr10:53,516,491...53,570,907 		JBrowse link
G Pafah1b1 platelet-activating factor acetylhydrolase 1b, regulatory subunit 1 acts_upstream_of_or_within ISO MGI:2384054 (PMID:18809722) RGD PMID:18809722 NCBI chr10:59,533,042...59,591,808
Ensembl chr10:59,534,117...59,591,808 		JBrowse link
G Plk1 polo-like kinase 1 involved_in IEA
ISS
ISO		 GO_REF:0000107
GO_REF:0000024
(PMID:20679239)		 Ensembl
UniProt
RGD		 PMID:20679239 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:176,716,420...176,726,400
Ensembl chr 1:176,716,420...176,726,400 		JBrowse link
nuclear membrane organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Emd emerin involved_in IEA
ISO		 GO_REF:0000107
(PMID:32923640)		 Ensembl
RGD		 PMID:32923640 GO_REF:0000107 NCBI chr  X:152,038,990...152,042,190
Ensembl chr  X:152,038,998...152,045,807 		JBrowse link
G Nemp1 nuclear envelope integral membrane protein 1 involved_in ISO (PMID:32923640) RGD PMID:32923640 NCBI chr 7:63,514,025...63,538,791
Ensembl chr 7:63,479,951...63,534,602 		JBrowse link
G Tmem43 transmembrane protein 43 acts_upstream_of_or_within
involved_in		 ISO
IBA
IEA		 (PMID:18230648)
GO_REF:0000033
GO_REF:0000118
GO_REF:0000107		 RGD
GO_Central
TreeGrafter
Ensembl		 PMID:18230648 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr 4:123,977,680...123,992,823
Ensembl chr 4:123,977,625...123,992,825 		JBrowse link
G Tor1a torsin family 1, member A involved_in
acts_upstream_of_or_within		 ISS
ISO
IBA		 GO_REF:0000024
MGI:1353605|MGI:3582693|MGI:3623421|MGI:3623422 (PMID:20080676), (PMID:20457914)
GO_REF:0000033		 UniProt
RGD
GO_Central		 PMID:20080676 PMID:20457914 GO_REF:0000024 GO_REF:0000033 NCBI chr 3:14,250,667...14,257,704
Ensembl chr 3:14,250,676...14,257,691 		JBrowse link
G Tor1aip1 torsin 1A interacting protein 1 involved_in
acts_upstream_of_or_within		 IBA
ISO
IEA		 GO_REF:0000033
MGI:1353568|MGI:4460952 (PMID:20457914)
GO_REF:0000118		 GO_Central
RGD
TreeGrafter		 PMID:20457914 GO_REF:0000033 GO_REF:0000118 NCBI chr13:68,196,681...68,226,121
Ensembl chr13:68,196,681...68,225,862 		JBrowse link
G Tor1b torsin family 1, member B involved_in
acts_upstream_of_or_within		 IBA
ISO		 GO_REF:0000033
MGI:1353568 (PMID:20457914)		 GO_Central
RGD		 PMID:20457914 GO_REF:0000033 NCBI chr 3:14,243,181...14,249,279
Ensembl chr 3:14,243,243...14,249,272 		JBrowse link
nuclear membrane reassembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chmp1a charged multivesicular body protein 1A involved_in ISO (PMID:26040713) RGD PMID:26040713 NCBI chr19:51,238,153...51,246,433
Ensembl chr19:51,238,160...51,246,436 		JBrowse link
G Chmp1b charged multivesicular body protein 1B involved_in ISO (PMID:26040713) RGD PMID:26040713 NCBI chr18:60,740,349...60,742,879 JBrowse link
G Chmp2a charged multivesicular body protein 2A involved_in ISO (PMID:26040712), (PMID:26040713) RGD PMID:26040712 PMID:26040713 NCBI chr 1:73,660,045...73,662,894
Ensembl chr 1:73,660,046...73,662,452 		JBrowse link
G Chmp2b charged multivesicular body protein 2B involved_in ISO (PMID:26040713) RGD PMID:26040713 NCBI chr11:3,337,478...3,364,015
Ensembl chr11:3,337,494...3,385,181 		JBrowse link
G Chmp3 charged multivesicular body protein 3 involved_in ISO (PMID:26040713) RGD PMID:26040713 NCBI chr 4:103,576,453...103,622,566
Ensembl chr 4:103,576,515...103,623,959 		JBrowse link
G Chmp4b charged multivesicular body protein 4B involved_in ISO (PMID:26040712), (PMID:26040713) RGD PMID:26040712 PMID:26040713 NCBI chr 3:143,170,859...143,211,376
Ensembl chr 3:143,170,902...143,210,844 		JBrowse link
G Chmp4c charged multivesicular body protein 4C involved_in ISO
IEA		 (PMID:26040713)
GO_REF:0000107		 RGD
Ensembl		 PMID:26040713 GO_REF:0000107 NCBI chr 2:91,391,729...91,428,652
Ensembl chr 2:91,388,530...91,428,668 		JBrowse link
G Chmp5 charged multivesicular body protein 5 involved_in ISO (PMID:26040713) RGD PMID:26040713 NCBI chr 5:56,081,385...56,098,529
Ensembl chr 5:56,081,343...56,098,529 		JBrowse link
G Chmp6 charged multivesicular body protein 6 involved_in ISO (PMID:26040713) RGD PMID:26040713 NCBI chr10:105,191,972...105,197,642
Ensembl chr10:105,191,950...105,197,640 		JBrowse link
G Chmp7 charged multivesicular body protein 7 involved_in ISO (PMID:26040712), (PMID:26040713) RGD PMID:26040712 PMID:26040713 NCBI chr15:44,790,983...44,806,216
Ensembl chr15:44,790,996...44,806,216 		JBrowse link
G Emd emerin IEP RGD PMID:10569247 RGD:1342448 NCBI chr  X:152,038,990...152,042,190
Ensembl chr  X:152,038,998...152,045,807 		JBrowse link
G ENSRNOG00000063933 involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 Ensembl chr  X:102,568,460...102,569,785 JBrowse link
G Nsfl1c NSFL1 cofactor involved_in IEA
IBA		 GO_REF:0000118
GO_REF:0000033		 TreeGrafter
GO_Central		 GO_REF:0000033 GO_REF:0000118 NCBI chr 3:139,978,306...140,002,876
Ensembl chr 3:139,978,301...140,002,870 		JBrowse link
G Spast spastin involved_in ISO
IEA
ISS		 (PMID:26040712)
GO_REF:0000107
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:26040712 GO_REF:0000024 GO_REF:0000107 NCBI chr 6:21,055,349...21,106,586
Ensembl chr 6:21,055,349...21,107,954 		JBrowse link
G Tmpo thymopoietin NAS RGD PMID:7737115 RGD:634476 NCBI chr 7:25,642,752...25,667,756
Ensembl chr 7:25,586,725...25,667,727 		JBrowse link
G Ubxn2a UBX domain protein 2A involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:27,884,364...27,912,767
Ensembl chr 6:27,884,680...27,912,649
Ensembl chr20:27,884,680...27,912,649 		JBrowse link
G Ubxn2b UBX domain protein 2B involved_in IEA
IBA		 GO_REF:0000118
GO_REF:0000033		 TreeGrafter
GO_Central		 GO_REF:0000033 GO_REF:0000118 NCBI chr 5:19,303,634...19,333,181
Ensembl chr 5:19,303,682...19,326,849 		JBrowse link
nuclear pore complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahctf1 AT hook containing transcription factor 1 involved_in ISO (PMID:17098863) RGD PMID:17098863 NCBI chr13:91,481,936...91,536,391
Ensembl chr13:91,481,936...91,536,391 		JBrowse link
G Fxr1 FMR1 autosomal homolog 1 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:32706158)		 UniProt
Ensembl
RGD		 PMID:32706158 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:116,884,167...116,937,590
Ensembl chr 2:116,884,248...116,937,590 		JBrowse link
G Ndc1 NDC1 transmembrane nucleoporin involved_in IEA
ISO		 GO_REF:0000107
(PMID:16600873)		 Ensembl
RGD		 PMID:16600873 GO_REF:0000107 NCBI chr 5:122,155,992...122,202,295
Ensembl chr 5:122,155,967...122,202,291 		JBrowse link
G Nup107 nucleoporin 107 involved_in ISO
ISS
IEA		 (PMID:15229283)
GO_REF:0000024
GO_REF:0000107		 RGD
UniProt
Ensembl		 PMID:15229283 GO_REF:0000024 GO_REF:0000107 NCBI chr 7:53,353,740...53,398,345
Ensembl chr 7:53,353,743...53,398,370 		JBrowse link
G Nup153 nucleoporin 153 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:12802065), (PMID:15229283)		 UniProt
Ensembl
RGD		 PMID:12802065 PMID:15229283 GO_REF:0000024 GO_REF:0000107 NCBI chr17:17,972,217...18,024,876
Ensembl chr17:17,972,217...18,024,876 		JBrowse link
G Nup205 nucleoporin 205 involved_in ISO (PMID:15229283) RGD PMID:15229283 NCBI chr 4:63,854,934...63,920,852
Ensembl chr 4:63,854,783...63,920,844 		JBrowse link
G Nup93 nucleoporin 93 involved_in ISO
IEA
ISS		 (PMID:15229283), (PMID:26878725)
GO_REF:0000107
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:15229283 PMID:26878725 GO_REF:0000024 GO_REF:0000107 NCBI chr19:10,684,214...10,788,009
Ensembl chr19:10,682,075...10,788,026 		JBrowse link
G Nup98 nucleoporin 98 and 96 precursor involved_in ISS
ISO		 GO_REF:0000024
(PMID:15229283)		 UniProt
RGD		 PMID:15229283 GO_REF:0000024 NCBI chr 1:156,494,423...156,591,415
Ensembl chr 1:156,494,423...156,591,415 		JBrowse link
G Rtn4 reticulon 4 involved_in IEA
ISS
ISO		 GO_REF:0000107
GO_REF:0000024
(PMID:26906412)		 Ensembl
UniProt
RGD		 PMID:26906412 GO_REF:0000024 GO_REF:0000107 NCBI chr14:103,450,074...103,497,687
Ensembl chr14:103,449,930...103,497,686 		JBrowse link
G Tmem170a transmembrane protein 170A involved_in ISO (PMID:26906412) RGD PMID:26906412 NCBI chr19:39,833,947...39,846,807
Ensembl chr19:39,833,980...39,846,783 		JBrowse link
G Tpr translocated promoter region, nuclear basket protein NOT|involved_in ISO
IMP		 (PMID:12802065)
PMID:11839768		 RGD PMID:12802065 PMID:11839768 RGD:8553300 NCBI chr13:62,424,312...62,487,502
Ensembl chr13:62,424,312...62,487,496 		JBrowse link
nuclear pore localization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Efcc1 EF-hand and coiled-coil domain containing 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:120,188,202...120,223,464
Ensembl chr 4:120,188,470...120,217,516 		JBrowse link
G Fxr1 FMR1 autosomal homolog 1 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:32706158)		 UniProt
Ensembl
RGD		 PMID:32706158 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:116,884,167...116,937,590
Ensembl chr 2:116,884,248...116,937,590 		JBrowse link
G Lmna lamin A/C involved_in IEA
IBA		 GO_REF:0000118
GO_REF:0000033		 TreeGrafter
GO_Central		 GO_REF:0000033 GO_REF:0000118 NCBI chr 2:173,939,751...173,960,423
Ensembl chr 2:173,939,751...173,960,423 		JBrowse link
G Lmnb1 lamin B1 involved_in IEA
IBA		 GO_REF:0000118
GO_REF:0000033		 TreeGrafter
GO_Central		 GO_REF:0000033 GO_REF:0000118 NCBI chr18:50,175,861...50,215,210
Ensembl chr18:50,175,874...50,214,502 		JBrowse link
G Lmnb2 lamin B2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:8,792,628...8,808,665
Ensembl chr 7:8,789,314...8,808,665 		JBrowse link
G Ndc1 NDC1 transmembrane nucleoporin involved_in IEA
ISO		 GO_REF:0000107
(PMID:16600873)		 Ensembl
RGD		 PMID:16600873 GO_REF:0000107 NCBI chr 5:122,155,992...122,202,295
Ensembl chr 5:122,155,967...122,202,291 		JBrowse link
nuclear pore organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ndc1 NDC1 transmembrane nucleoporin involved_in IBA
IEA		 GO_REF:0000033
GO_REF:0000118		 GO_Central
TreeGrafter		 GO_REF:0000033 GO_REF:0000118 NCBI chr 5:122,155,992...122,202,295
Ensembl chr 5:122,155,967...122,202,291 		JBrowse link
G Nup133 nucleoporin 133 involved_in ISO (PMID:15146057) RGD PMID:15146057 NCBI chr19:51,891,606...51,941,243
Ensembl chr19:51,891,629...51,941,239 		JBrowse link
G Nup205 nucleoporin 205 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:63,854,934...63,920,852
Ensembl chr 4:63,854,783...63,920,844 		JBrowse link
G Nup35 nucleoporin 35 involved_in IEA
IBA		 GO_REF:0000118
GO_REF:0000033		 TreeGrafter
GO_Central		 GO_REF:0000033 GO_REF:0000118 NCBI chr 3:65,555,203...65,594,488
Ensembl chr 3:65,558,968...65,585,130 		JBrowse link
G Nup54 nucleoporin 54 involved_in IBA
IEA		 GO_REF:0000033
GO_REF:0000118		 GO_Central
TreeGrafter		 GO_REF:0000033 GO_REF:0000118 NCBI chr14:15,617,630...15,636,029
Ensembl chr14:15,617,679...15,636,028 		JBrowse link
G Pom121 POM121 transmembrane nucleoporin IDA RGD PMID:8335683 RGD:729484 NCBI chr12:21,273,713...21,294,299
Ensembl chr12:21,276,913...21,294,294 		JBrowse link
G Seh1l SEH1-like nucleoporin involved_in ISO (PMID:15146057) RGD PMID:15146057 NCBI chr18:61,346,986...61,369,987 JBrowse link
G Tpr translocated promoter region, nuclear basket protein NOT|involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:15229283)
(PMID:11952838)		 UniProt
Ensembl
RGD		 PMID:11952838 PMID:15229283 GO_REF:0000024 GO_REF:0000107 NCBI chr13:62,424,312...62,487,502
Ensembl chr13:62,424,312...62,487,496 		JBrowse link
nuclear speck organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aff2 ALF transcription elongation factor 2 acts_upstream_of_or_within ISO (PMID:23562910) RGD PMID:23562910 NCBI chr  X:147,928,130...148,432,484
Ensembl chr  X:147,928,407...148,429,995 		JBrowse link
G Dyrk3 dual specificity tyrosine phosphorylation regulated kinase 3 involved_in ISO
IEA
ISS		 (PMID:29973724)
GO_REF:0000107
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:29973724 GO_REF:0000024 GO_REF:0000107 NCBI chr13:42,594,120...42,604,898
Ensembl chr13:42,594,121...42,604,778 		JBrowse link
G Srpk2 SRSF protein kinase 2 involved_in ISO (MGI:1195449|PMID:9446799) RGD PMID:9446799 MGI:1195449 NCBI chr 4:11,464,684...11,655,993
Ensembl chr 4:11,464,674...11,655,990 		JBrowse link
G Usp50 ubiquitin specific peptidase 50 acts_upstream_of_or_within ISO (PMID:28094437) RGD PMID:28094437 NCBI chr 3:114,012,104...114,035,468
Ensembl chr 3:114,011,702...114,035,476 		JBrowse link
nucleolar chromatin organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ddx11 DEAD/H-box helicase 11 involved_in ISO (PMID:26089203) RGD PMID:26089203 NCBI chr 9:105,833,234...105,862,844
Ensembl chr 9:105,833,504...105,862,550 		JBrowse link
nucleologenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Emg1 EMG1 N1-specific pseudouridine methyltransferase acts_upstream_of_or_within ISO MGI:4839753 (PMID:20858271) RGD PMID:20858271 NCBI chr 4:157,509,258...157,517,540
Ensembl chr 4:157,509,277...157,517,540 		JBrowse link
G Polr1b RNA polymerase I subunit B involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:3774130 (PMID:18023416)		 Ensembl
RGD		 PMID:18023416 GO_REF:0000107 NCBI chr 3:116,333,910...116,358,385
Ensembl chr 3:116,333,889...116,358,379 		JBrowse link
nucleolus organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actr6 actin related protein 6 involved_in ISO (PMID:26164235) RGD PMID:26164235 NCBI chr 7:24,150,250...24,171,057
Ensembl chr 7:24,150,250...24,171,067 		JBrowse link
G Nolc1 nucleolar and coiled-body phosphoprotein 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
(PMID:11424213)		 Ensembl
RGD		 PMID:11424213 GO_REF:0000107 NCBI chr 1:244,921,275...244,932,089
Ensembl chr 1:244,921,377...244,932,088 		JBrowse link
G Pes1 pescadillo ribosomal biogenesis factor 1 acts_upstream_of_or_within ISO MGI:2445464 (PMID:12237316) RGD PMID:12237316 NCBI chr14:78,850,754...78,867,134
Ensembl chr14:78,850,709...78,867,134 		JBrowse link
G Rps19 ribosomal protein S19 involved_in ISO (PMID:17053056) RGD PMID:17053056 NCBI chr 1:80,480,718...80,486,511
Ensembl chr 1:80,480,951...80,486,508 		JBrowse link
G Rrn3 RRN3 homolog, RNA polymerase I transcription factor acts_upstream_of_or_within ISO MGI:3584037 (PMID:15989966) RGD PMID:15989966 NCBI chr10:2,129,949...2,165,381
Ensembl chr10:2,129,978...2,165,663 		JBrowse link
G Usp36 ubiquitin specific peptidase 36 involved_in ISO (MGI:6117526|PMID:29273634) RGD PMID:29273634 MGI:6117526 NCBI chr10:103,497,349...103,528,877
Ensembl chr10:103,497,349...103,528,877 		JBrowse link
G Zfp354a zinc finger protein 354A IMP RGD PMID:10075651 RGD:1303369 NCBI chr10:35,396,242...35,408,069
Ensembl chr10:35,396,231...35,408,068 		JBrowse link
PML body organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Daxx death-domain associated protein IMP RGD PMID:17289031 RGD:9587773 NCBI chr20:4,970,090...4,976,145
Ensembl chr20:4,970,092...4,975,843 		JBrowse link
G Ets1 ETS proto-oncogene 1, transcription factor involved_in ISO
IEA		 (PMID:11909962), (PMID:15247905)
GO_REF:0000107		 RGD
Ensembl		 PMID:11909962 PMID:15247905 GO_REF:0000107 NCBI chr 8:31,045,909...31,168,010
Ensembl chr 8:31,045,945...31,168,010 		JBrowse link
G Habp4 hyaluronan binding protein 4 involved_in ISO
ISS		 (PMID:28695742)
GO_REF:0000024		 RGD
UniProt		 PMID:28695742 GO_REF:0000024 NCBI chr17:934,931...957,604
Ensembl chr17:935,654...957,565 		JBrowse link
G Pml PML nuclear body scaffold involved_in
acts_upstream_of_or_within		 ISO
IMP		 (PMID:17081985)
(PMID:12529400)
(PMID:10779416)
(PMID:8643677)		 RGD PMID:8643677 PMID:10779416 PMID:12529400 PMID:17081985 PMID:17289031 RGD:9587773 NCBI chr 8:58,627,347...58,661,927
Ensembl chr 8:58,628,837...58,658,971 		JBrowse link
G Serbp1 Serpine1 mRNA binding protein 1 involved_in ISO
IEA
ISS		 (PMID:28695742)
GO_REF:0000107
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:28695742 GO_REF:0000024 GO_REF:0000107 NCBI chr 4:96,401,587...96,421,816
Ensembl chr 4:96,401,477...96,421,813 		JBrowse link
G Sumo1 small ubiquitin-like modifier 1 acts_upstream_of_or_within ISO MGI:3819343 (PMID:19033381) RGD PMID:19033381 NCBI chr 9:61,078,790...61,108,697
Ensembl chr 9:61,077,435...61,108,761 		JBrowse link
rDNA heterochromatin formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Baz2a bromodomain adjacent to zinc finger domain, 2A involved_in
acts_upstream_of_or_within		 ISO (MGI:3587127|PMID:16085498), (MGI:3852313|PMID:12198165), (MGI:3852588|PMID:19578370)
(PMID:16678107), (PMID:20168299)		 RGD PMID:12198165 PMID:16085498 PMID:16678107 PMID:19578370 PMID:20168299 MGI:3587127 MGI:3852313 MGI:3852588 NCBI chr 7:523,204...560,911
Ensembl chr 7:523,265...560,659 		JBrowse link
G Bend3 BEN domain containing 3 involved_in ISO
IBA		 (PMID:26100909)
GO_REF:0000033		 RGD
GO_Central		 PMID:26100909 GO_REF:0000033 NCBI chr20:46,980,246...47,017,059
Ensembl chr20:46,979,831...47,014,671 		JBrowse link
G Rrp8 ribosomal RNA processing 8 involved_in ISS
IBA
IEA
ISO		 GO_REF:0000024
GO_REF:0000033
GO_REF:0000118
GO_REF:0000107
(PMID:18485871)		 UniProt
GO_Central
TreeGrafter
Ensembl
RGD		 PMID:18485871 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr 1:160,081,092...160,088,709
Ensembl chr 1:160,084,295...160,089,331 		JBrowse link
G Sirt1 sirtuin 1 involved_in ISO (PMID:18485871) RGD PMID:18485871 NCBI chr20:25,307,225...25,329,273
Ensembl chr20:25,306,917...25,329,260 		JBrowse link
G Smarca5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 involved_in ISO (MGI:3587127|PMID:16085498), (MGI:3852313|PMID:12198165) RGD PMID:12198165 PMID:16085498 MGI:3587127 MGI:3852313 NCBI chr19:27,271,918...27,304,594
Ensembl chr19:27,271,148...27,304,594 		JBrowse link
G Suv39h1 SUV39H1 histone lysine methyltransferase involved_in ISO (PMID:18485871) RGD PMID:18485871 NCBI chr  X:14,421,028...14,433,993
Ensembl chr  X:14,421,109...14,433,982 		JBrowse link
G Suv39h1-ps1 SUV39H1 histone lysine methyltransferase, pseudogene 1 involved_in ISO (PMID:18485871) RGD PMID:18485871 NCBI chr  X:141,792,589...141,795,257 JBrowse link
regulation of nucleus organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nfe2l1 NFE2 like bZIP transcription factor 1 acts_upstream_of_or_within ISO (PMID:22971132) RGD PMID:22971132 NCBI chr10:81,796,055...81,812,926
Ensembl chr10:81,800,366...81,832,318 		JBrowse link
G Syne1 spectrin repeat containing nuclear envelope protein 1 IMP RGD PMID:23863972 RGD:13209017 NCBI chr 1:41,512,146...41,983,382
Ensembl chr 1:41,512,030...41,983,322 		JBrowse link
regulation of rDNA heterochromatin formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Macroh2a1 macroH2A.1 histone NOT|involved_in ISO (PMID:24071584) RGD PMID:24071584 NCBI chr17:8,479,331...8,542,071
Ensembl chr17:8,479,372...8,542,072 		JBrowse link
sperm DNA condensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Brdt bromodomain testis associated involved_in ISO
IEA
ISS		 (MGI:5447877|PMID:22922464)
GO_REF:0000107
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:22922464 GO_REF:0000024 GO_REF:0000107 MGI:5447877 NCBI chr14:2,387,372...2,445,857
Ensembl chr14:2,387,796...2,445,842 		JBrowse link
G Chd5 chromodomain helicase DNA binding protein 5 involved_in ISO
ISS		 (MGI:5559810|PMID:24252660)
GO_REF:0000024		 RGD
UniProt		 PMID:24252660 GO_REF:0000024 MGI:5559810 NCBI chr 5:162,848,273...162,898,997
Ensembl chr 5:162,848,394...162,896,291 		JBrowse link
G Epc1 enhancer of polycomb homolog 1 involved_in ISO (PMID:28694333) RGD PMID:28694333 NCBI chr17:54,503,358...54,594,444
Ensembl chr17:54,503,358...54,594,425 		JBrowse link
G Fshr follicle stimulating hormone receptor acts_upstream_of_or_within ISO MGI:2384087 (PMID:10775161), (PMID:14680821) RGD PMID:10775161 PMID:14680821 NCBI chr 6:5,198,825...5,406,785
Ensembl chr 6:5,198,825...5,406,785 		JBrowse link
G H1f7 H1.7 linker histone involved_in ISS
ISO		 GO_REF:0000024
(MGI:3531623|PMID:15710904)		 HGNC
RGD		 PMID:15710904 GO_REF:0000024 MGI:3531623 NCBI chr 7:129,408,521...129,409,888
Ensembl chr 7:129,408,359...129,409,930 		JBrowse link
G H2bc1 H2B clustered histone 1 involved_in ISO
IEA
ISS		 (MGI:5502464|PMID:23884607)
GO_REF:0000107
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:23884607 GO_REF:0000024 GO_REF:0000107 MGI:5502464 NCBI chr17:41,172,041...41,172,510
Ensembl chr17:41,171,903...41,176,782
Ensembl chr17:41,171,903...41,176,782 		JBrowse link
G Kat5 lysine acetyltransferase 5 involved_in ISO
IEA		 (MGI:5913510|PMID:28694333)
GO_REF:0000107		 RGD
Ensembl		 PMID:28694333 GO_REF:0000107 MGI:5913510 NCBI chr 1:202,895,751...202,903,178
Ensembl chr 1:202,895,751...202,903,458 		JBrowse link
G Piwil1 piwi-like RNA-mediated gene silencing 1 involved_in ISO (MGI:5905675|PMID:28552346) RGD PMID:28552346 MGI:5905675 NCBI chr12:27,949,743...27,970,645
Ensembl chr12:27,949,744...27,970,580 		JBrowse link
G Prm1 protamine 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:4,871,817...4,872,312 JBrowse link
G Psme4 proteasome activator subunit 4 involved_in ISO (MGI:5494329|PMID:23706739) RGD PMID:23706739 MGI:5494329 NCBI chr14:104,505,716...104,609,410
Ensembl chr14:104,505,716...104,609,408 		JBrowse link
G Rnf8 ring finger protein 8 involved_in ISS
ISO		 GO_REF:0000024
(MGI:4441228|PMID:20153262), (MGI:5905675|PMID:28552346)		 UniProt
RGD		 PMID:20153262 PMID:28552346 GO_REF:0000024 MGI:4441228 MGI:5905675 NCBI chr20:7,682,258...7,710,448
Ensembl chr20:7,682,322...7,708,491 		JBrowse link
G Selenof selenoprotein F IMP RGD PMID:11344099 RGD:728803 NCBI chr 2:233,642,075...233,674,853
Ensembl chr 2:233,641,932...233,674,846 		JBrowse link
G Sycp1 synaptonemal complex protein 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:109542 (PMID:22164254)		 Ensembl
RGD		 PMID:22164254 GO_REF:0000107 NCBI chr 2:190,296,688...190,456,687
Ensembl chr 2:190,296,954...190,456,737 		JBrowse link
G Sycp3 synaptonemal complex protein 3 involved_in
acts_upstream_of_or_within		 ISO (PMID:14643120)
MGI:105931 (PMID:22164254)		 RGD PMID:14643120 PMID:22164254 NCBI chr 7:22,874,055...22,888,512
Ensembl chr 7:22,874,055...22,888,511 		JBrowse link
G Tnp1 transition protein 1 involved_in ISO
ISS		 (MGI:3041389|PMID:15083521), (MGI:3056208|PMID:15189834), (MGI:3620321|PMID:15163613), (MGI:5897488|PMID:28366643)
GO_REF:0000024		 RGD
UniProt		 PMID:15083521 PMID:15163613 PMID:15189834 PMID:28366643 GO_REF:0000024 MGI:3041389 MGI:3056208 MGI:3620321 MGI:5897488 NCBI chr 9:74,594,463...74,595,072
Ensembl chr 9:74,594,466...74,595,274 		JBrowse link
G Tnp2 transition protein 2 involved_in ISO
ISS		 (MGI:3041389|PMID:15083521), (MGI:3056208|PMID:15189834), (MGI:3620321|PMID:15163613), (MGI:5897488|PMID:28366643)
GO_REF:0000024		 RGD
UniProt		 PMID:15083521 PMID:15163613 PMID:15189834 PMID:28366643 GO_REF:0000024 MGI:3041389 MGI:3056208 MGI:3620321 MGI:5897488 NCBI chr10:4,879,812...4,880,540
Ensembl chr10:4,879,812...4,880,538 		JBrowse link
G Tssk6 testis-specific serine kinase 6 involved_in ISO (MGI:3580211|PMID:15870294) RGD PMID:15870294 MGI:3580211 NCBI chr16:19,523,626...19,526,074
Ensembl chr16:19,517,334...19,526,090 		JBrowse link
spermatid nucleus differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07054262.1 involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 Ensembl chr 3:138,778,150...138,779,864 JBrowse link
G Agfg1 ArfGAP with FG repeats 1 involved_in
acts_upstream_of_or_within		 IBA
ISO		 GO_REF:0000033
MGI:2182772 (PMID:16765935)		 GO_Central
RGD		 PMID:16765935 GO_REF:0000033 NCBI chr 9:84,124,845...84,182,615
Ensembl chr 9:84,125,120...84,178,128 		JBrowse link
G Agfg1-ps1 ArfGAP with FG repeats 1, pseudogene 1 involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 NCBI chr 3:138,777,896...138,779,912 JBrowse link
G Agfg2 ArfGAP with FG repeats 2 involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 NCBI chr12:19,012,228...19,048,433
Ensembl chr12:19,012,258...19,048,421 		JBrowse link
G Gopc golgi associated PDZ and coiled-coil motif containing acts_upstream_of_or_within ISO MGI:2386794 (PMID:16765935) RGD PMID:16765935 NCBI chr20:31,727,617...31,776,904
Ensembl chr20:31,727,620...31,776,903 		JBrowse link
G Hmgb2 high mobility group box 2 acts_upstream_of_or_within ISO MGI:2387671 (PMID:16765935) RGD PMID:16765935 NCBI chr16:32,710,651...32,713,230
Ensembl chr16:32,710,658...32,713,140 		JBrowse link
G Mfsd14a major facilitator superfamily domain containing 14A acts_upstream_of_or_within ISO MGI:5763015 (PMID:27107036) RGD PMID:27107036 NCBI chr 2:204,579,174...204,611,600
Ensembl chr 2:204,579,174...204,659,319 		JBrowse link
G Nectin2 nectin cell adhesion molecule 2 acts_upstream_of_or_within ISO MGI:2183405 (PMID:10733589) RGD PMID:10733589 NCBI chr 1:79,372,123...79,407,379
Ensembl chr 1:79,372,119...79,407,360 		JBrowse link
G Pygo1 pygopus family PHD finger 1 involved_in
acts_upstream_of_or_within		 IBA
ISO		 GO_REF:0000033
MGI:1916161 (PMID:23637336)		 GO_Central
RGD		 PMID:23637336 GO_REF:0000033 NCBI chr 8:73,666,210...73,684,873
Ensembl chr 8:73,665,593...73,684,869 		JBrowse link
G Pygo2 pygopus family PHD finger 2 involved_in
acts_upstream_of_or_within		 IBA
ISO		 GO_REF:0000033
MGI:1919385 (PMID:23637336)		 GO_Central
RGD		 PMID:23637336 GO_REF:0000033 NCBI chr 2:174,849,670...174,854,758
Ensembl chr 2:174,849,936...174,854,758 		JBrowse link
G Tbpl1 TATA-box binding protein like 1 acts_upstream_of_or_within ISO MGI:2181639 (PMID:16765935) RGD PMID:16765935 NCBI chr 1:22,777,892...22,803,305
Ensembl chr 1:22,778,459...22,803,122
Ensembl chr 1:22,778,459...22,803,122 		JBrowse link
G Tmf1 TATA element modulatory factor 1 acts_upstream_of_or_within ISO MGI:4867389|MGI:4867392 (PMID:20691678) RGD PMID:20691678 NCBI chr 4:129,759,952...129,785,705
Ensembl chr 4:129,763,114...129,785,629 		JBrowse link
spermatid nucleus elongation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cfap61 cilia and flagella associated protein 61 acts_upstream_of_or_within ISO MGI:7444390 (PMID:36659204) RGD PMID:36659204 NCBI chr 3:133,354,400...133,633,310
Ensembl chr 3:133,354,197...133,633,320 		JBrowse link
G Dmrtc2 DMRT-like family C2 acts_upstream_of_or_within ISO MGI:3697743 (PMID:17098235) RGD PMID:17098235 NCBI chr 1:80,466,259...80,473,883
Ensembl chr 1:80,466,132...80,473,531 		JBrowse link
G H1f7 H1.7 linker histone involved_in ISS
ISO		 GO_REF:0000024
(MGI:3531623|PMID:15710904)		 HGNC
RGD		 PMID:15710904 GO_REF:0000024 MGI:3531623 NCBI chr 7:129,408,521...129,409,888
Ensembl chr 7:129,408,359...129,409,930 		JBrowse link
G Ift88 intraflagellar transport 88 acts_upstream_of_or_within ISO MGI:2157527 (PMID:21337470) RGD PMID:21337470 NCBI chr15:31,573,325...31,666,068
Ensembl chr15:31,573,376...31,672,147 		JBrowse link
G Kdm3a lysine demethylase 3A involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:3764891 (PMID:17943087)		 Ensembl
RGD		 PMID:17943087 GO_REF:0000107 NCBI chr 4:103,630,907...103,675,073
Ensembl chr 4:103,630,908...103,675,073 		JBrowse link
G Tnp1 transition protein 1 involved_in ISS
IBA
IEA
ISO		 GO_REF:0000024
GO_REF:0000033
GO_REF:0000118
(PMID:10781074)		 UniProt
GO_Central
TreeGrafter
RGD		 PMID:10781074 GO_REF:0000024 GO_REF:0000033 GO_REF:0000118 NCBI chr 9:74,594,463...74,595,072
Ensembl chr 9:74,594,466...74,595,274 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20413
    cellular process 18812
      cellular component organization or biogenesis 7292
        cellular component organization 6982
          organelle organization 3887
            nucleus organization 154
              female pronucleus assembly 1
              karyogamy + 0
              macronucleus organization 0
              male pronucleus assembly + 0
              micronucleus organization 0
              nuclear body organization + 17
              nuclear envelope organization + 51
              nuclear matrix organization + 4
              nuclear pore localization 6
              nuclear pore organization + 16
              nucleolus organization + 20
              nucleus disassembly 0
              regulation of nucleus organization + 2
              spermatid nucleus differentiation + 33
              spermatid nucleus elongation 6
paths to the root