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ONTOLOGY REPORT - ANNOTATIONS

Term:nuclear pore organization
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Accession:GO:0006999 term browser browse the term
Definition:A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the nuclear pore.
Synonyms:exact_synonym: nuclear pore organisation
 related_synonym: nuclear pore complex organization and biogenesis;   nuclear pore organization and biogenesis


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nuclear pore organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ndc1 NDC1 transmembrane nucleoporin involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:122,155,992...122,202,295
Ensembl chr 5:122,155,967...122,202,291 		JBrowse link
G Nup133 nucleoporin 133 involved_in ISO (PMID:15146057) RGD PMID:15146057 NCBI chr19:51,891,606...51,941,243
Ensembl chr19:51,891,629...51,941,239 		JBrowse link
G Nup205 nucleoporin 205 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:63,854,934...63,920,852
Ensembl chr 4:63,854,783...63,920,844 		JBrowse link
G Nup35 nucleoporin 35 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:65,555,203...65,594,488
Ensembl chr 3:65,558,968...65,585,130 		JBrowse link
G Nup54 nucleoporin 54 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr14:15,617,630...15,636,029
Ensembl chr14:15,617,679...15,636,028 		JBrowse link
G Pom121 POM121 transmembrane nucleoporin IDA RGD PMID:8335683 RGD:729484 NCBI chr12:21,273,713...21,294,299
Ensembl chr12:21,276,913...21,294,294 		JBrowse link
G Seh1l SEH1-like nucleoporin involved_in ISO (PMID:15146057) RGD PMID:15146057 NCBI chr18:61,346,986...61,369,987 JBrowse link
G Tpr translocated promoter region, nuclear basket protein NOT|involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:15229283)
(PMID:11952838)		 UniProt
Ensembl
RGD		 PMID:11952838 PMID:15229283 GO_REF:0000024 GO_REF:0000107 NCBI chr13:62,424,312...62,487,502
Ensembl chr13:62,424,312...62,487,496 		JBrowse link
nuclear pore complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahctf1 AT hook containing transcription factor 1 involved_in ISO (PMID:17098863) RGD PMID:17098863 NCBI chr13:91,481,936...91,536,391
Ensembl chr13:91,481,936...91,536,391 		JBrowse link
G Fxr1 FMR1 autosomal homolog 1 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:32706158)		 UniProt
Ensembl
RGD		 PMID:32706158 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:116,884,167...116,937,590
Ensembl chr 2:116,884,248...116,937,590 		JBrowse link
G Ndc1 NDC1 transmembrane nucleoporin involved_in IEA
ISO		 GO_REF:0000107
(PMID:16600873)		 Ensembl
RGD		 PMID:16600873 GO_REF:0000107 NCBI chr 5:122,155,992...122,202,295
Ensembl chr 5:122,155,967...122,202,291 		JBrowse link
G Nup107 nucleoporin 107 involved_in ISO
ISS
IEA		 (PMID:15229283)
GO_REF:0000024
GO_REF:0000107		 RGD
UniProt
Ensembl		 PMID:15229283 GO_REF:0000024 GO_REF:0000107 NCBI chr 7:53,353,740...53,398,345
Ensembl chr 7:53,353,743...53,398,370 		JBrowse link
G Nup153 nucleoporin 153 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:12802065), (PMID:15229283)		 UniProt
Ensembl
RGD		 PMID:12802065 PMID:15229283 GO_REF:0000024 GO_REF:0000107 NCBI chr17:17,972,217...18,024,876
Ensembl chr17:17,972,217...18,024,876 		JBrowse link
G Nup205 nucleoporin 205 involved_in ISO (PMID:15229283) RGD PMID:15229283 NCBI chr 4:63,854,934...63,920,852
Ensembl chr 4:63,854,783...63,920,844 		JBrowse link
G Nup93 nucleoporin 93 involved_in ISO
IEA
ISS		 (PMID:15229283), (PMID:26878725)
GO_REF:0000107
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:15229283 PMID:26878725 GO_REF:0000024 GO_REF:0000107 NCBI chr19:10,684,214...10,788,009
Ensembl chr19:10,682,075...10,788,026 		JBrowse link
G Nup98 nucleoporin 98 and 96 precursor involved_in ISS
ISO		 GO_REF:0000024
(PMID:15229283)		 UniProt
RGD		 PMID:15229283 GO_REF:0000024 NCBI chr 1:156,494,423...156,591,415
Ensembl chr 1:156,494,423...156,591,415 		JBrowse link
G Rtn4 reticulon 4 involved_in IEA
ISS
ISO		 GO_REF:0000107
GO_REF:0000024
(PMID:26906412)		 Ensembl
UniProt
RGD		 PMID:26906412 GO_REF:0000024 GO_REF:0000107 NCBI chr14:103,450,074...103,497,687
Ensembl chr14:103,449,930...103,497,686 		JBrowse link
G Tmem170a transmembrane protein 170A involved_in ISO (PMID:26906412) RGD PMID:26906412 NCBI chr19:39,833,947...39,846,807
Ensembl chr19:39,833,980...39,846,783 		JBrowse link
G Tpr translocated promoter region, nuclear basket protein NOT|involved_in ISO
IMP		 (PMID:12802065)
PMID:11839768		 RGD PMID:12802065 PMID:11839768 RGD:8553300 NCBI chr13:62,424,312...62,487,502
Ensembl chr13:62,424,312...62,487,496 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19694
    cellular process 18196
      cellular component organization or biogenesis 6956
        cellular component organization 6692
          protein-containing complex organization 2384
            nuclear pore organization 16
              mitotic nuclear pore complex disassembly 0
              nuclear pore complex assembly + 11
Path 2
Term Annotations click to browse term
  biological_process 19694
    cellular process 18196
      cellular component organization or biogenesis 6956
        cellular component organization 6692
          organelle organization 3681
            nucleus organization 149
              nuclear pore organization 16
                mitotic nuclear pore complex disassembly 0
                nuclear pore complex assembly + 11
paths to the root